mRNA_H-paniculata_contig8304.16328.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8304.16328.1
Unique NamemRNA_H-paniculata_contig8304.16328.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8304.16328.1 vs. uniprot
Match: A0A6H5L0I5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0I5_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.740e-7
Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = -2
Query:   12 TTKQRTVHRTVVDAVTKNEGDLFIIDAPIGTGKIFLEKVIVAKWRSAGKIVLIISSL---------------MYELPLDEQGQPGAVKN 233
            T +QR V+ TVV +VT    +LF+IDAP GTGK + E ++ A+ RS  K+VL ++S                M++LPL+E+   GA+ N
Sbjct:  456 THEQRHVYDTVVSSVTSGASNLFMIDAPAGTGKTYTESILCARLRSMSKLVLCVASTGIAGLQLPGGWTAHSMFKLPLEEKNVSGAMCN 544          
BLAST of mRNA_H-paniculata_contig8304.16328.1 vs. uniprot
Match: A0A2G8SNC3_9APHY (Helitron_like_N domain-containing protein n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8SNC3_9APHY)

HSP 1 Score: 59.3 bits (142), Expect = 4.180e-7
Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = -3
Query:  344 KYLFKYYAKGPDHAHARIL-------------HVDDEIEQYCCTRYISAAETTWPLLGFHVLSRNPSVTLI 517
            +YLFKY  KGPDHA   ++             H+D EI +Y   RY+SAAE TW +LGFH+  + P+V+ +
Sbjct:  299 QYLFKYIHKGPDHAKFAVVADHSASDPSAAPTHID-EINEYWDGRYLSAAEATWRILGFHITKKEPAVSAL 368          
BLAST of mRNA_H-paniculata_contig8304.16328.1 vs. uniprot
Match: A0A6H5JZJ6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ6_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 4.340e-7
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = -2
Query:   12 TTKQRTVHRTVVDAVTKNEGDLFIIDAPIGTGKIFLEKVIVAKWRSAGKIVLIISSL---------------MYELPLDEQGQPGAVKN 233
            T +QR V+ TVV +VT    +LF+IDAP GTGK + E ++ A+ RS  K+VL ++S                M++LPL+++   GA+ N
Sbjct:  293 THEQRHVYDTVVSSVTSGASNLFMIDAPAGTGKTYTESILCARLRSMSKLVLCVASTGIAGLQLPGGWTAHSMFKLPLEDKNVSGAMCN 381          
BLAST of mRNA_H-paniculata_contig8304.16328.1 vs. uniprot
Match: A0A5K1K3W0_9APHY (ATP-dependent DNA helicase n=1 Tax=Ganoderma boninense TaxID=34458 RepID=A0A5K1K3W0_9APHY)

HSP 1 Score: 57.8 bits (138), Expect = 1.540e-6
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = -3
Query:  344 KYLFKYYAKGPDHAHARIL-----------HVDDEIEQYCCTRYISAAETTWPLLGFHVLSRNPSVTLI 517
            +YLFKY  KGPD A   ++           HVD EI +Y   RY+SAAE TW +LGFH+  ++P+V+ +
Sbjct:  479 QYLFKYIHKGPDRAKFAVVSDAPSSQSSTAHVD-EINEYWDGRYLSAAEATWRILGFHITKKDPAVSAL 546          
BLAST of mRNA_H-paniculata_contig8304.16328.1 vs. uniprot
Match: UPI001D01CF2F (ATP-dependent DNA helicase RRM3-like n=3 Tax=Cotesia glomerata TaxID=32391 RepID=UPI001D01CF2F)

HSP 1 Score: 55.1 bits (131), Expect = 5.020e-6
Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = -2
Query:   18 GKPTTLSTMSPFLRTTKQRTVHRTVVDAVTKNEGDLFIIDAPIGTGKIFLEKVIVAKWRSAGKIVLIISSL---------------MYELPLDEQGQPGAV 275
            G   T+ T S  L T +Q+ ++  ++ AV   +G +F +DAP GTGK FL  +I+AK RS  KI L+++S                ++E+PLD   +P A+
Sbjct:   25 GNLATIITNSEPLLTAEQKIIYDRIMLAVAAEQGGIFFLDAPGGTGKTFLISLILAKIRSQQKIALVVASSGITATLLDGGRTAHSLFEVPLDIHHKPDAM 125          
BLAST of mRNA_H-paniculata_contig8304.16328.1 vs. uniprot
Match: A0A2X0NRX7_9BASI (ATP-dependent DNA helicase n=1 Tax=Microbotryum silenes-dioicae TaxID=796604 RepID=A0A2X0NRX7_9BASI)

HSP 1 Score: 56.2 bits (134), Expect = 5.070e-6
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = -2
Query:   63 TKQRTVHRTVVDAVTKNEGDLFIIDAPIGTGKIFLEKVIVAKWRSAGKIVLIISSL 230
            TKQR V  TV+D++  + G +  IDAP GTGK FLEK+I+A+ RS GK  L ++SL
Sbjct:  799 TKQRVVVETVLDSILNSCGKVSFIDAPGGTGKTFLEKMILARIRSEGKYALAVASL 854          
BLAST of mRNA_H-paniculata_contig8304.16328.1 vs. uniprot
Match: A0A812DXG1_SEPPH (ATP-dependent DNA helicase n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812DXG1_SEPPH)

HSP 1 Score: 55.5 bits (132), Expect = 6.200e-6
Identity = 31/77 (40.26%), Postives = 45/77 (58.44%), Query Frame = -2
Query:   42 KQRTVHRTVVDAVTKNEGDLFIIDAPIGTGKIFLEKVIVAKWRSAGKIVLIISSL---------------MYELPLD 227
            +QRT + TV+DAV +  G +F +DAP GTGK+F+ K+I+A+ R  G I L ++S                M+ LPLD
Sbjct:   83 EQRTAYTTVIDAVRQQRGGIFFLDAPGGTGKMFITKLILAEIRRHGNITLAVASSRIAAILLSGGQTAHSMFRLPLD 159          
BLAST of mRNA_H-paniculata_contig8304.16328.1 vs. uniprot
Match: A0A2X0M924_9BASI (ATP-dependent DNA helicase n=1 Tax=Microbotryum silenes-dioicae TaxID=796604 RepID=A0A2X0M924_9BASI)

HSP 1 Score: 55.1 bits (131), Expect = 1.280e-5
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = -2
Query:   66 KQRTVHRTVVDAVTKNEGDLFIIDAPIGTGKIFLEKVIVAKWRSAGKIVLIISS 227
            KQR V  TV+D++  + G +F IDAP GTGK FLEK+I A  RS GK  L ++S
Sbjct:  864 KQRVVVETVLDSILNSRGKVFFIDAPGGTGKTFLEKMIFAWIRSEGKYALAVAS 917          
BLAST of mRNA_H-paniculata_contig8304.16328.1 vs. uniprot
Match: A0A2X0MZG5_9BASI (ATP-dependent DNA helicase n=1 Tax=Microbotryum silenes-dioicae TaxID=796604 RepID=A0A2X0MZG5_9BASI)

HSP 1 Score: 53.9 bits (128), Expect = 2.980e-5
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = -2
Query:   63 TKQRTVHRTVVDAVTKNEGDLFIIDAPIGTGKIFLEKVIVAKWRSAGKIVLIISSL 230
            TKQ  V  TV+D +  + G +F IDAP GTGK FLEK+I+A+  S GK  L ++SL
Sbjct:  406 TKQCVVVETVLDLILNSRGKVFFIDAPGGTGKTFLEKMILARICSEGKYALAVASL 461          
BLAST of mRNA_H-paniculata_contig8304.16328.1 vs. uniprot
Match: A0A4C1XXV9_EUMVA (ATP-dependent DNA helicase n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1XXV9_EUMVA)

HSP 1 Score: 52.8 bits (125), Expect = 3.340e-5
Identity = 33/88 (37.50%), Postives = 53/88 (60.23%), Query Frame = -2
Query:   66 NNA*LMHL-TSLGKPTTLSTMSPFLRTTKQR------TVHRTVVDAVTKNEGDLFIIDAPIGTGKIFLEKVIVAKWRSAGKIVLIISS 308
            NN+ L  L  +L KP  L+ ++ ++   + R      T +  V+ +V+ NEG +F +DAP GTGK F+  +I+AK RS GK+ L ++S
Sbjct:  104 NNSLLDPLEVALRKPYNLNDLNEYITENEPRLVNDQVTTYNCVMKSVSFNEGKIFFLDAPGGTGKTFITNLILAKVRSLGKLALAVAS 191          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8304.16328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5L0I5_9PHAE1.740e-739.33ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A2G8SNC3_9APHY4.180e-742.25Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5JZJ6_9PHAE4.340e-738.20ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A5K1K3W0_9APHY1.540e-643.48ATP-dependent DNA helicase n=1 Tax=Ganoderma bonin... [more]
UPI001D01CF2F5.020e-634.65ATP-dependent DNA helicase RRM3-like n=3 Tax=Cotes... [more]
A0A2X0NRX7_9BASI5.070e-653.57ATP-dependent DNA helicase n=1 Tax=Microbotryum si... [more]
A0A812DXG1_SEPPH6.200e-640.26ATP-dependent DNA helicase n=1 Tax=Sepia pharaonis... [more]
A0A2X0M924_9BASI1.280e-553.70ATP-dependent DNA helicase n=1 Tax=Microbotryum si... [more]
A0A2X0MZG5_9BASI2.980e-551.79ATP-dependent DNA helicase n=1 Tax=Microbotryum si... [more]
A0A4C1XXV9_EUMVA3.340e-537.50ATP-dependent DNA helicase n=1 Tax=Eumeta variegat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8304contigH-paniculata_contig8304:1428..1961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size534
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8304.16328.1prot_H-paniculata_contig8304.16328.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8304 1500..1934 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931043.0503962-UTR-H-paniculata_contig8304:1427..14991622931043.0503962-UTR-H-paniculata_contig8304:1427..1499Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8304 1428..1499 +
1691481563.5587857-UTR-H-paniculata_contig8304:1427..14991691481563.5587857-UTR-H-paniculata_contig8304:1427..1499Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8304 1428..1499 +
1622931043.0869763-UTR-H-paniculata_contig8304:1934..19611622931043.0869763-UTR-H-paniculata_contig8304:1934..1961Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8304 1935..1961 +
1691481563.5800817-UTR-H-paniculata_contig8304:1934..19611691481563.5800817-UTR-H-paniculata_contig8304:1934..1961Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8304 1935..1961 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931043.0695586-CDS-H-paniculata_contig8304:1499..19341622931043.0695586-CDS-H-paniculata_contig8304:1499..1934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8304 1500..1934 +
1691481563.5695307-CDS-H-paniculata_contig8304:1499..19341691481563.5695307-CDS-H-paniculata_contig8304:1499..1934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8304 1500..1934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8304.16328.1

>prot_H-paniculata_contig8304.16328.1 ID=prot_H-paniculata_contig8304.16328.1|Name=mRNA_H-paniculata_contig8304.16328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp
MIRTILPALLHLATITFSRKILPVPIGASMMKRSPSFLVTASTTVRCTVL
CLVVRKKGLMVDSVVGLPREVKCMSYALLRSRCSHSPNRCGSTSRWGCGS
IRENRVKARWFPPQKYTEYSSIVRFRRQHGVSSHGHDRGPSRSI*
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mRNA from alignment at H-paniculata_contig8304:1428..1961+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8304.16328.1 ID=mRNA_H-paniculata_contig8304.16328.1|Name=mRNA_H-paniculata_contig8304.16328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=534bp|location=Sequence derived from alignment at H-paniculata_contig8304:1428..1961+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGTGTGTGTGTTTTTTACAGCACCGGGCTGACCCTGTTCGTCGAGAGG TAATTCGTACATTAAAGAGGAAATGATCAGGACAATTTTGCCAGCGCTTC TCCACTTGGCGACGATCACTTTTTCTAGAAAGATTTTGCCGGTTCCTATA GGGGCATCTATGATGAAGAGGTCGCCTTCGTTCTTGGTAACAGCATCGAC GACGGTGCGATGTACGGTTCTCTGTTTAGTTGTGCGTAAGAAGGGACTCA TGGTTGACAGTGTAGTGGGTTTGCCGAGAGAGGTCAAATGCATGAGCTAT GCGTTGTTAAGGTCACGCTGTTCTCATTCTCCAAATCGGTGTGGATCAAC GTCACGCTGGGGTTGCGGCTCAATACGTGAAAACCGAGTAAAGGCCAGGT GGTTTCCGCCGCAGAAATATACCGAGTACAGCAGTATTGTTCGATTTCGT CGTCAACATGGAGTATCCTCGCATGGGCATGATCGGGGCCCTTCGCGTAG TATTTGAAAAGGTACTTGACACACGCGCTTGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig8304:1428..1961+

>mRNA_H-paniculata_contig8304.16328.1 ID=mRNA_H-paniculata_contig8304.16328.1|Name=mRNA_H-paniculata_contig8304.16328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig8304:1428..1961+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCAGGACAATTTTGCCAGCGCTTCTCCACTTGGCGACGATCACTTT
TTCTAGAAAGATTTTGCCGGTTCCTATAGGGGCATCTATGATGAAGAGGT
CGCCTTCGTTCTTGGTAACAGCATCGACGACGGTGCGATGTACGGTTCTC
TGTTTAGTTGTGCGTAAGAAGGGACTCATGGTTGACAGTGTAGTGGGTTT
GCCGAGAGAGGTCAAATGCATGAGCTATGCGTTGTTAAGGTCACGCTGTT
CTCATTCTCCAAATCGGTGTGGATCAACGTCACGCTGGGGTTGCGGCTCA
ATACGTGAAAACCGAGTAAAGGCCAGGTGGTTTCCGCCGCAGAAATATAC
CGAGTACAGCAGTATTGTTCGATTTCGTCGTCAACATGGAGTATCCTCGC
ATGGGCATGATCGGGGCCCTTCGCGTAGTATTTGAATGATCAGGACAATT
TTGCCAGCGCTTCTCCACTTGGCGACGATCACTTTTTCTAGAAAGATTTT
GCCGGTTCCTATAGGGGCATCTATGATGAAGAGGTCGCCTTCGTTCTTGG
TAACAGCATCGACGACGGTGCGATGTACGGTTCTCTGTTTAGTTGTGCGT
AAGAAGGGACTCATGGTTGACAGTGTAGTGGGTTTGCCGAGAGAGGTCAA
ATGCATGAGCTATGCGTTGTTAAGGTCACGCTGTTCTCATTCTCCAAATC
GGTGTGGATCAACGTCACGCTGGGGTTGCGGCTCAATACGTGAAAACCGA
GTAAAGGCCAGGTGGTTTCCGCCGCAGAAATATACCGAGTACAGCAGTAT
TGTTCGATTTCGTCGTCAACATGGAGTATCCTCGCATGGGCATGATCGGG
GCCCTTCGCGTAGTATTTGA
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