mRNA_H-paniculata_contig82915.16311.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig82915.16311.1
Unique NamemRNA_H-paniculata_contig82915.16311.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig82915.16311.1 vs. uniprot
Match: E6ZES4_ECTSI (ATP synthase subunit a n=65 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES4_ECTSI)

HSP 1 Score: 223 bits (569), Expect = 5.220e-72
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 1
Query:    1 MFNSPLEQFQILPLLSFGANLFDFSITNAMITTCVSLTFFIFLFYCLSFYGLNCFPTRWQLVLESLYISTAGLIWDSVGPQGQKYFPFLFVVFSFILISNVSGLVPYSFTISS 339
            MFNSPLEQFQILPLLSFGANLFDFSITNAMITTCVSLTFFIFLFYCLSFYGLNCFPTRWQLVLESLYISTAGLIWDSVGPQGQKYFPFLFVVFSFILISNVSGLVPYSFTI+S
Sbjct:    1 MFNSPLEQFQILPLLSFGANLFDFSITNAMITTCVSLTFFIFLFYCLSFYGLNCFPTRWQLVLESLYISTAGLIWDSVGPQGQKYFPFLFVVFSFILISNVSGLVPYSFTITS 113          
BLAST of mRNA_H-paniculata_contig82915.16311.1 vs. uniprot
Match: D2YYC2_SCYLO (F-ATPase protein 6 (Fragment) n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=D2YYC2_SCYLO)

HSP 1 Score: 202 bits (515), Expect = 1.240e-65
Identity = 98/113 (86.73%), Postives = 106/113 (93.81%), Query Frame = 1
Query:    1 MFNSPLEQFQILPLLSFGANLFDFSITNAMITTCVSLTFFIFLFYCLSFYGLNCFPTRWQLVLESLYISTAGLIWDSVGPQGQKYFPFLFVVFSFILISNVSGLVPYSFTISS 339
            MFNSPLEQFQILPLLSFG NLFD SITNAM+TTC+ L FF+F+FYCL  Y LNCFPTRWQLVLESLYISTAGLIWDSVGP+GQKYFPFLFV+FSFILISNVSGLVPYSFT++S
Sbjct:    1 MFNSPLEQFQILPLLSFGVNLFDLSITNAMLTTCIGLAFFLFIFYCLLSYKLNCFPTRWQLVLESLYISTAGLIWDSVGPKGQKYFPFLFVIFSFILISNVSGLVPYSFTVTS 113          
BLAST of mRNA_H-paniculata_contig82915.16311.1 vs. uniprot
Match: A0A089MYN0_PETFA (ATP synthase subunit a n=18 Tax=Ectocarpales TaxID=2877 RepID=A0A089MYN0_PETFA)

HSP 1 Score: 204 bits (520), Expect = 1.440e-64
Identity = 98/113 (86.73%), Postives = 106/113 (93.81%), Query Frame = 1
Query:    1 MFNSPLEQFQILPLLSFGANLFDFSITNAMITTCVSLTFFIFLFYCLSFYGLNCFPTRWQLVLESLYISTAGLIWDSVGPQGQKYFPFLFVVFSFILISNVSGLVPYSFTISS 339
            MFNSPLEQFQILPLLSFG NLFDFSITNAMITTC+ L FF+F FYCL  Y LNCFPTRWQL+LESLY+STAGLIWDS+GP+GQKYFPFLFV+FSFILISNVSGLVPYSFTI+S
Sbjct:    1 MFNSPLEQFQILPLLSFGVNLFDFSITNAMITTCIGLAFFLFTFYCLLSYNLNCFPTRWQLILESLYVSTAGLIWDSIGPKGQKYFPFLFVIFSFILISNVSGLVPYSFTITS 113          
BLAST of mRNA_H-paniculata_contig82915.16311.1 vs. uniprot
Match: ATP6_PYLLI (ATP synthase subunit a n=2 Tax=Pylaiella littoralis TaxID=2885 RepID=ATP6_PYLLI)

HSP 1 Score: 194 bits (493), Expect = 1.740e-60
Identity = 96/113 (84.96%), Postives = 104/113 (92.04%), Query Frame = 1
Query:    1 MFNSPLEQFQILPLLSFGANLFDFSITNAMITTCVSLTFFIFLFYCLSFYGLNCFPTRWQLVLESLYISTAGLIWDSVGPQGQKYFPFLFVVFSFILISNVSGLVPYSFTISS 339
            MFNSPLEQF+ILPLLSFGANLFDFSITNAM+TTCVSL+FF+FLFYCL  YGLN FPTRWQLVLE LY STAGL+WDSVGP+  K FPFLFV+FSFILISNV GLVPYSFTI+S
Sbjct:    1 MFNSPLEQFEILPLLSFGANLFDFSITNAMLTTCVSLSFFLFLFYCLFSYGLNSFPTRWQLVLEGLYTSTAGLVWDSVGPRRPKVFPFLFVIFSFILISNVQGLVPYSFTITS 113          
BLAST of mRNA_H-paniculata_contig82915.16311.1 vs. uniprot
Match: A0A1I9LW45_9PHAE (ATP synthase subunit a n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW45_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 4.790e-58
Identity = 93/113 (82.30%), Postives = 103/113 (91.15%), Query Frame = 1
Query:    1 MFNSPLEQFQILPLLSFGANLFDFSITNAMITTCVSLTFFIFLFYCLSFYGLNCFPTRWQLVLESLYISTAGLIWDSVGPQGQKYFPFLFVVFSFILISNVSGLVPYSFTISS 339
            M +SPLEQFQILPL SFG NLFDF+ITNAMI+T +SL FFIFLFYCLS YGL+CFPTRWQL+LE LY +TAGLIWDSVG QGQKYFPFLFV+FS ILISN+SGLVPYSFTI+S
Sbjct:    1 MLSSPLEQFQILPLFSFGMNLFDFTITNAMISTFISLFFFIFLFYCLSLYGLSCFPTRWQLILEGLYTTTAGLIWDSVGLQGQKYFPFLFVIFSSILISNLSGLVPYSFTITS 113          
BLAST of mRNA_H-paniculata_contig82915.16311.1 vs. uniprot
Match: A0A8F0FD27_9PHAE (ATP synthase subunit a n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0FD27_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 5.900e-54
Identity = 87/113 (76.99%), Postives = 97/113 (85.84%), Query Frame = 1
Query:    1 MFNSPLEQFQILPLLSFGANLFDFSITNAMITTCVSLTFFIFLFYCLSFYGLNCFPTRWQLVLESLYISTAGLIWDSVGPQGQKYFPFLFVVFSFILISNVSGLVPYSFTISS 339
            MF SPLEQFQILPLLS G  LFDFSITNA I T ++L  F  + YCLS YG NCFP+RWQLVLES Y++TAGLIWDSVGPQGQKYFPF+F +FSF+LISNVSGLVPYSFTI+S
Sbjct:    1 MFFSPLEQFQILPLLSIGVGLFDFSITNATIATSLALGLFFLIDYCLSAYGFNCFPSRWQLVLESFYLTTAGLIWDSVGPQGQKYFPFIFAIFSFVLISNVSGLVPYSFTITS 113          
BLAST of mRNA_H-paniculata_contig82915.16311.1 vs. uniprot
Match: A0A343C631_FUCDI (ATP synthase subunit a n=3 Tax=Fucus TaxID=3011 RepID=A0A343C631_FUCDI)

HSP 1 Score: 177 bits (448), Expect = 1.180e-53
Identity = 85/113 (75.22%), Postives = 98/113 (86.73%), Query Frame = 1
Query:    1 MFNSPLEQFQILPLLSFGANLFDFSITNAMITTCVSLTFFIFLFYCLSFYGLNCFPTRWQLVLESLYISTAGLIWDSVGPQGQKYFPFLFVVFSFILISNVSGLVPYSFTISS 339
            MF SPLEQFQILP  SFG  LFDFSITNAMITT + L FF+F+ YCLS Y  +CFP RWQL++E LY++TAGLIWDS+GP GQKYFPF+F++FSFILISNVSGLVPYSFTI+S
Sbjct:    1 MFFSPLEQFQILPFFSFGIALFDFSITNAMITTFLGLGFFLFVHYCLSVYSFSCFPNRWQLLIEGLYLTTAGLIWDSIGPAGQKYFPFIFMIFSFILISNVSGLVPYSFTITS 113          
BLAST of mRNA_H-paniculata_contig82915.16311.1 vs. uniprot
Match: A0A0U1WNN5_SARFS (ATP synthase subunit a n=24 Tax=Sargassaceae TaxID=3014 RepID=A0A0U1WNN5_SARFS)

HSP 1 Score: 172 bits (435), Expect = 1.100e-51
Identity = 83/113 (73.45%), Postives = 98/113 (86.73%), Query Frame = 1
Query:    1 MFNSPLEQFQILPLLSFGANLFDFSITNAMITTCVSLTFFIFLFYCLSFYGLNCFPTRWQLVLESLYISTAGLIWDSVGPQGQKYFPFLFVVFSFILISNVSGLVPYSFTISS 339
            MF SPLEQFQILP +  G  LFD SITNAMITT  SL F +F++YCLS +GL+CFP+RWQL+LE LY++TAGLIWDS+G  GQKYFPF+F++FSFILISNVSGLVPYSFTI+S
Sbjct:    1 MFFSPLEQFQILPFVDLGIGLFDLSITNAMITTVFSLGFILFVYYCLSVFGLSCFPSRWQLLLERLYLTTAGLIWDSIGLHGQKYFPFIFMIFSFILISNVSGLVPYSFTITS 113          
BLAST of mRNA_H-paniculata_contig82915.16311.1 vs. uniprot
Match: A0A4Y5T8Z6_9PHAE (ATP synthase subunit a n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T8Z6_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 3.080e-38
Identity = 69/110 (62.73%), Postives = 84/110 (76.36%), Query Frame = 1
Query:   10 SPLEQFQILPLLSFGANLFDFSITNAMITTCVSLTFFIFLFYCLSFYGLNCFPTRWQLVLESLYISTAGLIWDSVGPQGQKYFPFLFVVFSFILISNVSGLVPYSFTISS 339
            SPLEQF ILPLLS      DFSITNA++T+ +SL     L++ LS +GL   P RWQL+LESLY + AGLIWDSVG +GQKYFPF+F +F F+L+SNVSGL PYSFT +S
Sbjct:    5 SPLEQFSILPLLSLSVTFIDFSITNAVLTSLISLGSAWCLYFLLSVFGLTIVPVRWQLILESLYETAAGLIWDSVGARGQKYFPFIFSIFLFVLLSNVSGLAPYSFTTTS 114          
BLAST of mRNA_H-paniculata_contig82915.16311.1 vs. uniprot
Match: Q2TUB2_DICDH (ATP synthase subunit a n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TUB2_DICDH)

HSP 1 Score: 132 bits (331), Expect = 5.550e-36
Identity = 66/110 (60.00%), Postives = 80/110 (72.73%), Query Frame = 1
Query:   10 SPLEQFQILPLLSFGANLFDFSITNAMITTCVSLTFFIFLFYCLSFYGLNCFPTRWQLVLESLYISTAGLIWDSVGPQGQKYFPFLFVVFSFILISNVSGLVPYSFTISS 339
            SPLEQF I+P+LSFG    D SITNA++T+ VSL      +  L  + L   PTRWQL+ E LY   AGLIWDSVGP+GQKYFPF+F +F F+L+SNVSGL PYSFT +S
Sbjct:    5 SPLEQFSIIPILSFGVLFLDISITNAVLTSFVSLGAIWSFYSMLVIFDLTIVPTRWQLIFEGLYEVAAGLIWDSVGPRGQKYFPFIFTIFFFVLVSNVSGLAPYSFTTTS 114          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig82915.16311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E6ZES4_ECTSI5.220e-7299.12ATP synthase subunit a n=65 Tax=Phaeophyceae TaxID... [more]
D2YYC2_SCYLO1.240e-6586.73F-ATPase protein 6 (Fragment) n=1 Tax=Scytosiphon ... [more]
A0A089MYN0_PETFA1.440e-6486.73ATP synthase subunit a n=18 Tax=Ectocarpales TaxID... [more]
ATP6_PYLLI1.740e-6084.96ATP synthase subunit a n=2 Tax=Pylaiella littorali... [more]
A0A1I9LW45_9PHAE4.790e-5882.30ATP synthase subunit a n=1 Tax=Pleurocladia lacust... [more]
A0A8F0FD27_9PHAE5.900e-5476.99ATP synthase subunit a n=1 Tax=Analipus japonicus ... [more]
A0A343C631_FUCDI1.180e-5375.22ATP synthase subunit a n=3 Tax=Fucus TaxID=3011 Re... [more]
A0A0U1WNN5_SARFS1.100e-5173.45ATP synthase subunit a n=24 Tax=Sargassaceae TaxID... [more]
A0A4Y5T8Z6_9PHAE3.080e-3862.73ATP synthase subunit a n=1 Tax=Dictyopteris divari... [more]
Q2TUB2_DICDH5.550e-3660.00ATP synthase subunit a n=1 Tax=Dictyota dichotoma ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig82915contigH-paniculata_contig82915:1..339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score90.1
Seed ortholog evalue7.1e-16
Seed eggNOG ortholog70448.Q0P3G1
Preferred nameatp6
KEGG koko:K02126
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00158
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.ATP synthase A chain
EggNOG OGs34IHJ@3041,37J5M@33090,COG0356@1,KOG4665@2759
COG Functional cat.C
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03029
Exons1
Model size339
Cds size339
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931040.3126318-CDS-H-paniculata_contig82915:0..3391622931040.3126318-CDS-H-paniculata_contig82915:0..339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82915 1..339 -
1691481562.203503-CDS-H-paniculata_contig82915:0..3391691481562.203503-CDS-H-paniculata_contig82915:0..339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82915 1..339 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig82915.16311.1prot_H-paniculata_contig82915.16311.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig82915 1..339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig82915.16311.1

>prot_H-paniculata_contig82915.16311.1 ID=prot_H-paniculata_contig82915.16311.1|Name=mRNA_H-paniculata_contig82915.16311.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MFNSPLEQFQILPLLSFGANLFDFSITNAMITTCVSLTFFIFLFYCLSFY
GLNCFPTRWQLVLESLYISTAGLIWDSVGPQGQKYFPFLFVVFSFILISN
VSGLVPYSFTISS
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mRNA from alignment at H-paniculata_contig82915:1..339-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig82915.16311.1 ID=mRNA_H-paniculata_contig82915.16311.1|Name=mRNA_H-paniculata_contig82915.16311.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=339bp|location=Sequence derived from alignment at H-paniculata_contig82915:1..339- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTAATAGTCCCTTAGAACAATTTCAAATACTTCCTTTGTTAAGTTT TGGTGCGAATCTATTTGATTTCTCTATAACTAACGCAATGATAACCACTT GTGTAAGTTTAACTTTTTTTATTTTTTTATTTTATTGTTTATCTTTTTAT GGTTTAAATTGTTTTCCAACAAGATGGCAATTGGTTTTAGAAAGTTTATA TATTAGTACAGCAGGTTTAATATGGGATAGTGTAGGCCCGCAAGGACAAA AATATTTTCCATTTTTATTTGTAGTTTTTAGTTTTATCCTAATTTCAAAT GTATCTGGGCTTGTTCCATATTCTTTTACCATATCTAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig82915:1..339-

>mRNA_H-paniculata_contig82915.16311.1 ID=mRNA_H-paniculata_contig82915.16311.1|Name=mRNA_H-paniculata_contig82915.16311.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig82915:1..339- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTAATAGTCCCTTAGAACAATTTCAAATACTTCCTTTGTTAAGTTT
TGGTGCGAATCTATTTGATTTCTCTATAACTAACGCAATGATAACCACTT
GTGTAAGTTTAACTTTTTTTATTTTTTTATTTTATTGTTTATCTTTTTAT
GGTTTAAATTGTTTTCCAACAAGATGGCAATTGGTTTTAGAAAGTTTATA
TATTAGTACAGCAGGTTTAATATGGGATAGTGTAGGCCCGCAAGGACAAA
AATATTTTCCATTTTTATTTGTAGTTTTTAGTTTTATCCTAATTTCAAAT
GTATCTGGGCTTGTTCCATATTCTTTTACCATATCTAGTATGTTTAATAG
TCCCTTAGAACAATTTCAAATACTTCCTTTGTTAAGTTTTGGTGCGAATC
TATTTGATTTCTCTATAACTAACGCAATGATAACCACTTGTGTAAGTTTA
ACTTTTTTTATTTTTTTATTTTATTGTTTATCTTTTTATGGTTTAAATTG
TTTTCCAACAAGATGGCAATTGGTTTTAGAAAGTTTATATATTAGTACAG
CAGGTTTAATATGGGATAGTGTAGGCCCGCAAGGACAAAAATATTTTCCA
TTTTTATTTGTAGTTTTTAGTTTTATCCTAATTTCAAATGTATCTGGGCT
TGTTCCATATTCTTTTACCATATCTAGT
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