mRNA_H-paniculata_contig828.16302.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig828.16302.1
Unique NamemRNA_H-paniculata_contig828.16302.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig828.16302.1 vs. uniprot
Match: A0A7S2ATP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ATP2_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.600e-7
Identity = 25/39 (64.10%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:  511 EIIRMASQYTPCAGCSAAVKGLLQRPIEELRLVNAVMEE 627
            EI+R+A+QYT CAGC AA+  LL+RP+ +LRL+NAVM+E
Sbjct:    1 EIVRLAAQYTTCAGCCAALGSLLKRPLSDLRLLNAVMKE 39
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BLAST of mRNA_H-paniculata_contig828.16302.1 vs. uniprot
Match: W7TQZ3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQZ3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.260e-6
Identity = 27/52 (51.92%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:  493 VKIERAEIIRMASQYTPCAGCSAAVKGLLQRPIEELRLVNAVMEERKEVDGP 648
            + ++++++I ++SQY+ CAGC AAVK LL RP+ ELRL+NAVM      DGP
Sbjct:   96 ILVDKSQLINLSSQYSTCAGCLAAVKMLLSRPLSELRLLNAVM-----ADGP 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig828.16302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S2ATP2_9STRA3.600e-764.10Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
W7TQZ3_9STRA3.260e-651.92Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig828contigH-paniculata_contig828:15912..18891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size707
Cds size552
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig828.16302.1prot_H-paniculata_contig828.16302.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig828 15912..16463 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931039.1353579-CDS-H-paniculata_contig828:15911..164631622931039.1353579-CDS-H-paniculata_contig828:15911..16463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig828 15912..16463 -
1691481561.6954818-CDS-H-paniculata_contig828:15911..164631691481561.6954818-CDS-H-paniculata_contig828:15911..16463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig828 15912..16463 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931039.1570773-UTR-H-paniculata_contig828:16463..164821622931039.1570773-UTR-H-paniculata_contig828:16463..16482Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig828 16464..16482 -
1691481561.7098684-UTR-H-paniculata_contig828:16463..164821691481561.7098684-UTR-H-paniculata_contig828:16463..16482Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig828 16464..16482 -
1622931039.1740234-UTR-H-paniculata_contig828:17259..173571622931039.1740234-UTR-H-paniculata_contig828:17259..17357Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig828 17260..17357 -
1691481561.7219877-UTR-H-paniculata_contig828:17259..173571691481561.7219877-UTR-H-paniculata_contig828:17259..17357Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig828 17260..17357 -
1622931039.1970093-UTR-H-paniculata_contig828:18855..188911622931039.1970093-UTR-H-paniculata_contig828:18855..18891Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig828 18856..18891 -
1691481561.7313395-UTR-H-paniculata_contig828:18855..188911691481561.7313395-UTR-H-paniculata_contig828:18855..18891Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig828 18856..18891 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig828.16302.1

>prot_H-paniculata_contig828.16302.1 ID=prot_H-paniculata_contig828.16302.1|Name=mRNA_H-paniculata_contig828.16302.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=184bp
MRGGSPNGMAPLCVKDRRKAQAAAVAAAADASAGRSGENGHVVGCKGSVA
GRGNGHNNAKRSCSVGCSGLSGAASSGSARGSGGGDGRNNRTGVGSECTG
GARGSHINSEPPVVKIERAEIIRMASQYTPCAGCSAAVKGLLQRPIEELR
LVNAVMEERKEVDGPMGGSNRRSKRGRGGGGRMG
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mRNA from alignment at H-paniculata_contig828:15912..18891-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig828.16302.1 ID=mRNA_H-paniculata_contig828.16302.1|Name=mRNA_H-paniculata_contig828.16302.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2980bp|location=Sequence derived from alignment at H-paniculata_contig828:15912..18891- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGTGGGACAGAGGGAGTGTCTCAGGGCCAGGAGGTGAGGCAAGCGTG
GTTATGATAAGAATTGCACTAGAGAAGAAGGTGCTACTTGAACTTGTTGC
ATTCAATGTACTGAGAAAGCTGGTGCCTGGGAAAAAAACACCCGCGCGAT
TTGTTTTTTTCTGTTTCGACGAATGTTACTGACAGCATGGAAGAGAGGGA
AGGGCGCACAGATTTGAGGGTATGGCATCCCCTTCGTGAACCTCTAAAGG
GATTGTGCTCGGCGTTTCCCACACTCTGGTTTCTGATGCCGGAACCCCAA
ATCTTTGGGGCGCTATCTTGTACTGGCTTCGATGTTAGCGTTCTTAAGGC
ATTGCGCCTGACTGGTAAGACAGAACGGCTGGCCATAGTTAAATGTTCCC
CGCGATGTGATCACGGCTATTCAGGAGTGCACTGATATGTGTTTGCACTG
TCATCGGGACAACAAGGGATCAACACACCGTCAAGTTGGCTCGTGAGCCG
GCTGAGGGGGCAGGTGGTACAGTCAGGTCAATATTCTACGGCTTCTGTTC
GCCATGTGTATTGCGTTCTTCTTCACGATCAAATAGGATCCTCTCTTTTG
AACTTTTTTGTGCAACCGGTACAATAGCGAACAGTACAGTCCATTATTTA
CGATGTACAGTGGTAGCGCCCTACAATGTAGACGTGAGACCTGCGCAAGC
AGCACATGACCTGCATGGCCTCTCACATTTTCCTACTGTTCCTTCGAGTT
TTCCCGTAGGTGCCGCTTTAAACTACAAAATAATTGAGCCACTACAAAAT
GTTGGCACATAGAGTAAGTACCACGCTATCTGGGGCAAGGGAGTCGTGGG
TTCACCCTATCTAGCTAGTCCCCTCTGCTGGGTCGTCCTATGTGTGAACG
CGTTGTAGGTGCAGCGGTAATATACCCAGTTATTTATGATGAGATTGCCC
CACTCTACTGTCGTCCTTCACTCTCTGTATTAACGGCGTATCCTGATATT
CGTACACACATCGGCGAGAATTAGCCCGGAGCATGGTGATGACCCTTTTT
ATCTCATTTATGCATAGTGGGACCTACCTTCAAGGCACAGTATGGAGTTA
AACACACAGTGATCGACAGCACACTACACACCACCGGACGTCCAACTTAA
CCAGCTCCTCTTATGTAACTGTCTCATGACTTGTTACTTATGTGTTTAGC
TTTGACCCGCCGTCGGATCACGAAGGTTACGCACTTGCCCCGCCGTCGGA
GCACGAAGTTTACACACTTGCCCTACCCTCAGCCCAAGTCAGCTGTAGTC
GTTGACTATGGTTGTGGTACTCCCTGTAGCCTTTTCCCCCCCACCTCCCA
CTACATTTCGACCATCGATATTGTTGGTGTCGCCACCGTTGCGATAATCG
ATTATGTCGTATGTATTTTCTTCGTCATCCCATCCTAGTTTCAATATTTT
CCTCTACCCAGAGCGTCTCCTTTTCCATTGCGTTGTTTCCGTTGTATTCT
TTGTATATTTTGTTTTTTCTGTCTTGCTGTGAAGGTGGGATATCGGGTAT
GATTGGCGCCCTCATGAGTGCTGACCTGTCCTCTGCGTGAGACATGGCAA
AGGCATCGGTTACTAATAATCTGGTGCATGATGTGGGTGACGAACTCTCA
CATTTCGTACTGCAGGTTTTGAATTTCGGAGCGAACCTAGGAAGGGAGGC
ATGTAGGGATTTCTTGTGTGCGGCAAAATAGTCGTGAGACTGTCTATTGA
TTGAGATTGCTGTCATAATGTTATCGTGATTTTTAGCAGGAGAACATTGG
CTTGAAAAGCGGTCTAGAGAGTGGACGGAAATTATGACTCTGATCAAGAC
GACCTGAATCTGCCGTGGGGGGCGGTGATTTTTATATCCGAATCGTAAGG
TATCGGTTATTCGAGACCTGTACGTCGTTATTAACTGTCAATTGAAGAGT
CCATAATGGAGTCTACTACTCTTGGCCAACGGTATGTGACTAGATATTAA
TAAGTGATATTTCTTGGGAGCAGAAAACGAAGCTGGCCTAATTTTCACGA
AAAACAGTGGCTCCTCCCACCATGTACATAGTACAGCGATGAACTTTCGA
CTGAAGCTGTCTGATGACCCTCATGTACGCGATTGGATTTTCCCGTCGTC
GGATCACAAACTTCAATTGATATCTAGATAATAAGAGCTACCCCCAATCC
AGAGTAACGCACGCTCGGGACCCTCAGCTTGTATTAGCGGTGCAGCACTG
GACACATAAACCGTGGGCATTACGGATATGAACAGTACTGTGGCAGAGTG
ATTGTCGTTGTCGTTGTTGCTTCGTTTTTCGCGGATACTCAATCGATACC
CAGACTAAACTTGCCCTCCACACATCGCTGCCCGTGCATTCAATGTCCAT
GCCAAGCAGCTAGTCCTAAGCCCCAGCCATGCGAGGAGGCTCCCCGAACG
GTATGGCCCCCTTGTGCGTCAAGGACAGGCGGAAGGCGCAAGCGGCGGCC
GTAGCGGCGGCAGCAGACGCGTCGGCAGGGAGGTCGGGCGAAAATGGCCA
TGTCGTAGGCTGCAAGGGCAGTGTCGCTGGCCGAGGAAACGGCCACAATA
ACGCAAAGAGGTCCTGTTCGGTCGGCTGTAGTGGTTTGTCTGGTGCCGCT
TCGTCGGGGAGCGCACGCGGCAGCGGTGGCGGCGACGGTAGAAACAACCG
TACTGGGGTTGGATCCGAGTGCACCGGCGGCGCACGAGGTAGCCACATCA
ACAGCGAGCCCCCGGTTGTGAAGATAGAGAGGGCTGAGATTATTCGTATG
GCTTCGCAGTACACACCTTGTGCCGGCTGCAGCGCCGCGGTTAAGGGCCT
GTTGCAACGACCGATAGAGGAGCTACGCCTTGTGAACGCCGTGATGGAAG
AGCGGAAAGAGGTCGACGGTCCGATGGGAGGGAGCAACAGGCGGAGCAAA
CGTGGCAGGGGCGGCGGTGGCCGGATGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig828:15912..18891-

>mRNA_H-paniculata_contig828.16302.1 ID=mRNA_H-paniculata_contig828.16302.1|Name=mRNA_H-paniculata_contig828.16302.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1104bp|location=Sequence derived from alignment at H-paniculata_contig828:15912..18891- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAGGAGGCTCCCCGAACGGTATGGCCCCCTTGTGCGTCAAGGACAG
GCGGAAGGCGCAAGCGGCGGCCGTAGCGGCGGCAGCAGACGCGTCGGCAG
GGAGGTCGGGCGAAAATGGCCATGTCGTAGGCTGCAAGGGCAGTGTCGCT
GGCCGAGGAAACGGCCACAATAACGCAAAGAGGTCCTGTTCGGTCGGCTG
TAGTGGTTTGTCTGGTGCCGCTTCGTCGGGGAGCGCACGCGGCAGCGGTG
GCGGCGACGGTAGAAACAACCGTACTGGGGTTGGATCCGAGTGCACCGGC
GGCGCACGAGGTAGCCACATCAACAGCGAGCCCCCGGTTGTGAAGATAGA
GAGGGCTGAGATTATTCGTATGGCTTCGCAGTACACACCTTGTGCCGGCT
GCAGCGCCGCGGTTAAGGGCCTGTTGCAACGACCGATAGAGGAGCTACGC
CTTGTGAACGCCGTGATGGAAGAGCGGAAAGAGGTCGACGGTCCGATGGG
AGGGAGCAACAGGCGGAGCAAACGTGGCAGGGGCGGCGGTGGCCGGATGG
GGATGCGAGGAGGCTCCCCGAACGGTATGGCCCCCTTGTGCGTCAAGGAC
AGGCGGAAGGCGCAAGCGGCGGCCGTAGCGGCGGCAGCAGACGCGTCGGC
AGGGAGGTCGGGCGAAAATGGCCATGTCGTAGGCTGCAAGGGCAGTGTCG
CTGGCCGAGGAAACGGCCACAATAACGCAAAGAGGTCCTGTTCGGTCGGC
TGTAGTGGTTTGTCTGGTGCCGCTTCGTCGGGGAGCGCACGCGGCAGCGG
TGGCGGCGACGGTAGAAACAACCGTACTGGGGTTGGATCCGAGTGCACCG
GCGGCGCACGAGGTAGCCACATCAACAGCGAGCCCCCGGTTGTGAAGATA
GAGAGGGCTGAGATTATTCGTATGGCTTCGCAGTACACACCTTGTGCCGG
CTGCAGCGCCGCGGTTAAGGGCCTGTTGCAACGACCGATAGAGGAGCTAC
GCCTTGTGAACGCCGTGATGGAAGAGCGGAAAGAGGTCGACGGTCCGATG
GGAGGGAGCAACAGGCGGAGCAAACGTGGCAGGGGCGGCGGTGGCCGGAT
GGGG
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