mRNA_H-paniculata_contig828.16300.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig828.16300.1
Unique NamemRNA_H-paniculata_contig828.16300.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig828.16300.1 vs. uniprot
Match: A0A6H5JFC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC0_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 8.240e-8
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 3 
Query:  207 SRCLDAFTVVLNEAYSGKVPYVSTKSLQLVSLQFCITCRSVSTLQVK 347
            SRCLDAF V LN+A  G   YVST+ LQL SL FC+ CRSV T+ +K
Sbjct:   28 SRCLDAFKVALNQACDGGGWYVSTEQLQLSSLPFCVACRSVPTMHLK 74
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BLAST of mRNA_H-paniculata_contig828.16300.1 vs. uniprot
Match: A0A6H5JG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG83_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 9.270e-5
Identity = 23/36 (63.89%), Postives = 27/36 (75.00%), Query Frame = 3 
Query:  231 VVLNEAYSGKVPYVSTKSLQLVSLQFCITCRSVSTL 338
            V LNE Y GK  Y+ST  LQL S++FC+ CRSVSTL
Sbjct:    2 VALNETYGGKQWYISTVQLQLASVEFCVACRSVSTL 37
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig828.16300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFC0_9PHAE8.240e-861.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG83_9PHAE9.270e-563.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig828contigH-paniculata_contig828:2630..6438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size358
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig828.16300.1prot_H-paniculata_contig828.16300.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig828 2630..3178 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931039.2535834-CDS-H-paniculata_contig828:2629..28081622931039.2535834-CDS-H-paniculata_contig828:2629..2808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig828 2630..2808 -
1691481561.7407453-CDS-H-paniculata_contig828:2629..28081691481561.7407453-CDS-H-paniculata_contig828:2629..2808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig828 2630..2808 -
1622931039.2692318-CDS-H-paniculata_contig828:3132..31781622931039.2692318-CDS-H-paniculata_contig828:3132..3178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig828 3133..3178 -
1691481561.752674-CDS-H-paniculata_contig828:3132..31781691481561.752674-CDS-H-paniculata_contig828:3132..3178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig828 3133..3178 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931039.2897813-UTR-H-paniculata_contig828:3178..32701622931039.2897813-UTR-H-paniculata_contig828:3178..3270Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig828 3179..3270 -
1691481561.761145-UTR-H-paniculata_contig828:3178..32701691481561.761145-UTR-H-paniculata_contig828:3178..3270Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig828 3179..3270 -
1622931039.310135-UTR-H-paniculata_contig828:6399..64381622931039.310135-UTR-H-paniculata_contig828:6399..6438Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig828 6400..6438 -
1691481561.7725518-UTR-H-paniculata_contig828:6399..64381691481561.7725518-UTR-H-paniculata_contig828:6399..6438Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig828 6400..6438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig828.16300.1

>prot_H-paniculata_contig828.16300.1 ID=prot_H-paniculata_contig828.16300.1|Name=mRNA_H-paniculata_contig828.16300.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
MDALSNRSESGAAEAENSRNEENRTSRCLDAFTVVLNEAYSGKVPYVSTK
SLQLVSLQFCITCRSVSTLQVKLTM
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mRNA from alignment at H-paniculata_contig828:2630..6438-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig828.16300.1 ID=mRNA_H-paniculata_contig828.16300.1|Name=mRNA_H-paniculata_contig828.16300.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3809bp|location=Sequence derived from alignment at H-paniculata_contig828:2630..6438- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGAAATGCTTGCTCGGTGCCATGGATGATATTCTGCAGGTATAAATTCT
ACCCTCTCGCGCACCGTACTTCAAGGGGGGGATGGCGGGGGGGGACGCGT
ACGTCCTGCCCCCTCTACCCCATGGCGGTATAACGTGCAACTTTTGCTTC
GTTGATGCTATTCTGCTTCTAACGAGTGAAAATCGGTTCAGCCAACGAAA
TGGAAATGCAGGCAGCTGCTAAAACATTGTTTTGCCGAACCTCTCTCGAA
ACACTGGCATCGACAAAAAATGAAAAACATATTCCCAGTATCACAACCTC
GTTTGAAGTCAGTTATGGTCGAGCGATATTACTAAGCGTCTGTGACTACT
GTGACTTCAGATAGGATCTCTTTCGTGAGCCTATGGTGATTAACTACTGT
CCCAGAGAAAAAGGGAACAGGCGACTGCAGTTTTTCTATTGATCAATTGT
TGGAAGGAGGAATCTTATTGATAGACAAAAATTATCCTTCTCTCACGCCC
GGTCCAGTTGACGATTAGACAAAATACTGGCTGTGACAACGTGATAACGC
ATCAACGCAACGTGCGAATGCAGGTGATATATATTGCAGTAGCGACAGGG
AATCAAACGTCTTCGATGGTGAAACGCACTGTACATTTATCCCTTCCAAA
GTACAGACACCGTCGGGATATAAATGTCCTGGAATCAACTCATGTGCCTA
CTACCCCATGTTAGGCCAAAACGGTAAACAGATACCCTGCTTCACAGTCT
ACAGCATGTTGCAATTCCCCAGACGTGCCGTCAGAGGATGAACTCTGATC
AAGAAAGATAGTGGGTCGATAGAATGGTCTGCAAACTCATGTGATTCTTT
GTACTGACGATATTTCCTCTGAAACGATACTGGCAAAAGCTAGTACGCTG
TGGAAGGGCGAGAATAATGCTCTCAGAGTATACGGCCGTCTACTCCAACA
TTTACGAGCGAGTGGGACTACTGTACCCCCCCCCCTGCGCGATAATATAA
AAGAAGAATAGAGGCATTATGCTCCCAGCTTTGGATCAGAGGTTCTCCTG
TCAGCTACAACTGATCCACGACAAAAAAGAAGAAACGAGATTGTAGCTTT
CACACTAATTTCTCGAAAGCAAGACACACGCATGTTGACCGAAGAGCCTG
TCCATCGACTGACGACATCTTCGCAACGACGCACCTCTTATAGCCGTCAC
CTAATACTTGATTGTAGCAGCCTTCGATCGGTCGTTTTTTTCTGGGAATA
TGTTATATATCTTTCGACCCTTACCATTAATATTGTCCATTCAGGTAGTC
ATCACCAAGTTTTTCCTCACCAAAATCGCTCCGCGTACCCCCATGTGCTC
TAGACCGGGATGCAGCAAGCTAGTCTTTGCCGATTTGTACATTTAATACT
GATCTATCAGCGGAGGAAGCTGTTGATTGCAGCTTGTTTTTAAAGAAACT
TCCTAAGTATTTCATTCGAGGAAGTTGCAGCTTCGCCAGAGAGGCAGCTC
CACGGGAGGCTTAGTAGAAGATTGAAGAGGGCTCGTAACAGGGTAAGTAA
TGCAAACTTCAACCCAGTACTACTCGAGTTAAGACTGTACAATAGAACGA
TTCAAAGCTATGCGTTGTATATAGATATGAAAAGCCTGTTGGAGACAGCC
ACGGTAGAGAGCCGGATATTGCATTCGAACGGCATCAGAAGGGTTGCAGG
TTCTTCTGTTGTAGTAATTCCAATTACTTTTCTTGTGTATTGCTCAATGT
TTCTTTCCTGCATCTACATTATCCCAGTGGCGTATAGGCTATTTGTCCAG
AGTGTGGTTCGCGCTAGGCTCGCTCGAGCAGAAGTTATATTACAGTTGTG
CACGGGTGAGACGCTGCTACCTCTTATGGCATTTTAATTTTTCGAAATAT
TTTTACAAGTGCCAAAATGCCACGGTGATATGCCGTATCGAATGAAACCG
CCGTGTCAGCGCAATTGAAGTTACCGCGATTGCGCAACATTAACGTACCG
CGCAACCGTTTAACCTCGTATATAGAGACAGATAGCTATTTTGTCCTCGG
TGGGATGTGGTGGCATGTATGATATACGCTGAAATTGTCTCAGGTCATTT
ACTACGCAGACAGTCCATGGTCCATGTGCACGTTTGCAGTAGTAAGTGCT
TAATCGTTTGGTCACAGCCCTTTTTCCTCTTTCGACACATGTGGCCAGAG
GTGTACCTTGTTACGGATATTGCAACGCCCACGCTGTGGTAAGGTTGGCA
ATGTTTACACAACGTATTAGGACGTTGTGCTGAGGTTGACAATGTACATA
CAGCGTCCGAATACGTTTTATGCACGTTGTCAACCTCACCGCAACGCGGG
GACGTTGTCTTATCCGCAATAAGGTACTCGCAAGGTACCCTCTGGTCACG
TATAGATGCTCAAGGAGACTTTTATTGGATATTTCCTAGGTTCCTGTAGC
CTATTGATGTCTGGAACAAACAAATAGGATTTTATACAACTCTTTATTAC
AGGTCCCGTTTAGGGAAAGAGATGAGAGGGTCAGAGTGGGGGAGCCGCAC
TCAGCAAAACCAAGCTAGGGGCTGTGGTCAACAACTCAGACAGTCATAAT
CCAGAATCCGAGACAGATAATGACAGACACAAGACCAGATCACCTACACT
CAATGGCAGATTTAGTACAATGAAACACTGCCAATATCCGTATAGCGCTC
TTCGCGGTCTAATAAAAACCTACGATTATTGGCGTATTTTTCGTACCCGA
GTCTAAGGATCCAGATGGGAAAACTAACCCATAATATCGGACAACTTTAG
CGATCAGCATTATTACCATCATCGTGTCTTCGCATTTTCACCCGATAGCT
ATCTGCGAAAACATGCATCATGCATCATATTTGTGACATGAGAGGAGGGC
GCTACAGACAGTTGCGAAGGCTGCGAAAACTGGTCATACACAGCTTTCAC
CAGAACGTGGCTTGTGGAAGAGGTGTACTTGAAATATAGGTCTACCTGGA
ACCTAGCTGGAACCCGCGATTTTAGCGGGGTATTATATCTGTTCCACGTC
TATACCCTTTGTAGCCCTCTGTACCCCATATTTCATGTACCACGCGTGGA
TCAATTGTGCATATCACTTCGTACGAACCTGTCATCTTGTAACGTTTTGG
TGCTTCCGTCGGCCTCAGGTGTGAAAAACGACTGGGCAGAGCGTAGGCTA
CTTGGCACTGGAGCTCGTTGACACCAAAAGTACCTCCGCGAATCATACCC
TTACGGCACAATGGATGCATTGTCGAACCGTTCCGAAAGCGGCGCAGCTG
AAGCAGGTGAGAGCAGCGCCACCAATTCGTTTCTTTCCAGCCAAAATAGG
CCTGGCAGTCATTCTGAATTGTTACATTCGTTGCAGTAGAGTTTTCGTCG
TTCTCGAAGTACGCATTACCGTTTTGCGTATTCTGCTGATGCTTACCAGG
TATGCAATTGTAAAGTACAAGCACTCTGGTTTGTCCTGTCTATGATGTGT
TTGTGTGTCCGCAGCTCATCATTTTTTTATGTACGAAGTAGTACATGATA
CGTGCTTCAGTGAACGCTGTTTTTATGAGTTTTTTCGATGTCCTGTATGC
GTTTATGTGTCGACTACACTTGTTGCCCAGAAAACTCAAGGAATGAGGAG
AACCGAACCAGCCGATGTCTGGACGCATTCACTGTTGTTCTCAACGAGGC
GTACTCCGGAAAGGTACCGTACGTGTCGACCAAGAGCTTACAACTCGTGT
CCCTGCAGTTCTGCATAACTTGCCGAAGCGTCAGCACCCTGCAAGTGAAG
CTCACCATG
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Coding sequence (CDS) from alignment at H-paniculata_contig828:2630..6438-

>mRNA_H-paniculata_contig828.16300.1 ID=mRNA_H-paniculata_contig828.16300.1|Name=mRNA_H-paniculata_contig828.16300.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig828:2630..6438- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGCATTGTCGAACCGTTCCGAAAGCGGCGCAGCTGAAGCAGATGG
ATGCATTGTCGAACCGTTCCGAAAGCGGCGCAGCTGAAGCAGAAAACTCA
AGGAATGAGGAGAACCGAACCAGCCGATGTCTGGACGCATTCACTGTTGT
TCTCAACGAGGCGTACTCCGGAAAGGTACCGTACGTGTCGACCAAGAGCT
TACAACTCGTGTCCCTGCAGTTCTGCATAACTTGCCGAAGCGTCAGCACC
CTGCAAGTGAAGCTCACCATGAAAACTCAAGGAATGAGGAGAACCGAACC
AGCCGATGTCTGGACGCATTCACTGTTGTTCTCAACGAGGCGTACTCCGG
AAAGGTACCGTACGTGTCGACCAAGAGCTTACAACTCGTGTCCCTGCAGT
TCTGCATAACTTGCCGAAGCGTCAGCACCCTGCAAGTGAAGCTCACCATG
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