mRNA_H-paniculata_contig8276.16296.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8276.16296.1
Unique NamemRNA_H-paniculata_contig8276.16296.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8276.16296.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 4.570e-36
Identity = 86/202 (42.57%), Postives = 114/202 (56.44%), Query Frame = 1 
Query: 1045 RPQSMIQDVGFKLFVGNFVAVHITETMHHSTFTSNLDALFKKAKEDAMAGIKVHKQSCTELAWKGPLLAGEIDLTTAANVEYIIFMTSYISPG-SDELKRVGLATRQFRGSHKAEDILHWMRKVTTAFFGGLIGDDVDPQEVFIGFTVDQGSNVFNAIDNLGIALIRQ*CGR------WKL-----AALCKNKSMEKDLKIL 1614
            RPQ M  D GFKLFVG     ++  TM  +TF   LDAL+ + K+  M  +++ ++    + + G  L   +DLTT AN EYI F  SY+  G +D++ RV LATR F GSH AEDI  W+  +T  +F  LIG  V P +VF+GFTVDQG N+ NA   LG+ ++   C R      W L     A  CKNK M   +K L
Sbjct:   26 RPQQMRYDDGFKLFVGVLSPQYVDTTMASTTFNKVLDALYDRVKQAIMDDLRLLREEFLGMGYGGAFLGAHLDLTTVANEEYITFTVSYVKKGKTDDVTRVALATRAFPGSHTAEDIKPWIEALTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNAYTALGVPVVECNCHRVNSAVLWALGIAGCARTCKNKLMGDLMKKL 227
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BLAST of mRNA_H-paniculata_contig8276.16296.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 2.620e-35
Identity = 72/177 (40.68%), Postives = 106/177 (59.89%), Query Frame = 1 
Query: 1045 RPQSMIQDVGFKLFVGNFVAVHITETMHHSTFTSNLDALFKKAKEDAMAGIKVHKQSCTELAWKGPLLAGEIDLTTAANVEYIIFMTSYISPGSDELKRVGLATRQFRGSHKAEDILHWMRKVTTAFFGGLIGDDVDPQEVFIGFTVDQGSNVFNAIDNLGIALIRQ*CGRWKLAAL 1575
            RPQ M  D GFKLF+G     ++  TM + TF  NLD L+ + K   +  ++  ++ C  + + G  L  ++DLTT A  EYI F  SY+  GS ++ RV LA R F G+H A+DI  W+ ++T  +F   +G+DV+P++VF+ FTVDQG NV NA   LG+ +++  C R   A L
Sbjct:  219 RPQQMRHDDGFKLFLGALSPDYVESTMSNDTFDKNLDTLYSRVKTSIVDDLRTLREECLGMGYSGAFLGAQLDLTTVAGEEYITFTVSYVEKGSTDVTRVALACRAFPGTHTADDISPWIEELTREYFADFMGEDVEPKDVFLAFTVDQGGNVVNACKALGVPVVKCNCHRVNTAVL 395
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BLAST of mRNA_H-paniculata_contig8276.16296.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.140e-34
Identity = 81/211 (38.39%), Postives = 122/211 (57.82%), Query Frame = 1 
Query: 1045 RPQSMIQDVGFKLFVGNFVAVHITETMHHSTFTSNLDALFKKAKEDAMAGIKVHKQSCTELAWKGPLLAGEIDLTTAANVEYIIFMTSYISPGSDELKRVGLATRQFRGSHKAEDILHWMRK--------VTTAFFGGLIGDDVDPQEVFIGFTVDQGSNVFNAIDNLGIALIRQ*CGRWKLAALC-------------KNKSMEKDLKIL 1614
            RPQ+M  D G+KL +G     ++  TM  +TF S L  ++ +  +    G+++H++SC +L + GP L  ++DLTT AN EYI F  SYI+  +  + RVGLATR F GSH A DI  W+ K        +TT FF  ++G++V P++VF+ FTVDQG NV NA  NL + +++  C   +L ++              +N +MEK +K L
Sbjct:  201 RPQNMRYDDGYKLHMGMLCPKYVESTMSDATFNSILSTIYTETCDAVKTGLRLHRESCVKLGYVGPFLGAQLDLTTVANEEYITFSVSYIAEAATTITRVGLATRAFPGSHTAADIEPWIEKASFTTFKLLTTEFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLK--CNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRL 409
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BLAST of mRNA_H-paniculata_contig8276.16296.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 2.370e-33
Identity = 68/177 (38.42%), Postives = 102/177 (57.63%), Query Frame = 1 
Query: 1045 RPQSMIQDVGFKLFVGNFVAVHITETMHHSTFTSNLDALFKKAKEDAMAGIKVHKQSCTELAWKGPLLAGEIDLTTAANVEYIIFMTSYISPGSDELKRVGLATRQFRGSHKAEDILHWMRKVTTAFFGGLIGDDVDPQEVFIGFTVDQGSNVFNAIDNLGIALIRQ*CGRWKLAAL 1575
            RP+ +  D GFKLF+G+    ++T TM  STF   LD L+       +  ++  ++    + + GP L  ++DLTTAA  EYI F  +++  G  ++ R+ LA R F GSH AEDI  W+ K+T  +F G +G+ V P +VF+ FTVDQG N+ NA   LG+ ++   C R   A +
Sbjct:   26 RPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVV 202
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BLAST of mRNA_H-paniculata_contig8276.16296.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 5.250e-33
Identity = 68/177 (38.42%), Postives = 102/177 (57.63%), Query Frame = 1 
Query: 1045 RPQSMIQDVGFKLFVGNFVAVHITETMHHSTFTSNLDALFKKAKEDAMAGIKVHKQSCTELAWKGPLLAGEIDLTTAANVEYIIFMTSYISPGSDELKRVGLATRQFRGSHKAEDILHWMRKVTTAFFGGLIGDDVDPQEVFIGFTVDQGSNVFNAIDNLGIALIRQ*CGRWKLAAL 1575
            RP+ +  D GFKLF+G+    ++T TM  STF   LD L+       +  ++  ++    + + GP L  ++DLTTAA  EYI F  +++  G  ++ R+ LA R F GSH AEDI  W+ K+T  +F G +G+ V P +VF+ FTVDQG N+ NA   LG+ ++   C R   A +
Sbjct:  221 RPEQLRFDQGFKLFLGSLSPEYVTTTMAKSTFNQTLDELYGTVLSSVVGELRTLREENLGMGYSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVV 397
[Close]
BLAST of mRNA_H-paniculata_contig8276.16296.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 2.540e-5
Identity = 31/80 (38.75%), Postives = 45/80 (56.25%), Query Frame = 1 
Query: 1408 KVTTAFFGGLIGDDVDPQEVFIGFTVDQGSNVFNAIDNLGIALIRQ*CGR------WKL-----AALCKNKSMEKDLKIL 1614
            ++T  +FGG +G+ V+P +VF+ FTVDQG NV NA   LG+ +++  C R      W L     A  C+N  M   +K L
Sbjct:    6 QLTKEYFGGFMGESVEPSDVFLAFTVDQGGNVVNACTALGVQVVKCNCHRINSAVVWALGIAGSATTCRNTKMGGLMKKL 85
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8276.16296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JXV5_9PHAE4.570e-3642.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE2.620e-3540.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ52_9PHAE1.140e-3438.39Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JTB8_9PHAE2.370e-3338.42Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE5.250e-3338.42Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KDJ6_9PHAE2.540e-538.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8276contigH-paniculata_contig8276:7850..9931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1798
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8276.16296.1prot_H-paniculata_contig8276.16296.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8276 8906..9681 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931038.6312153-UTR-H-paniculata_contig8276:7849..89051622931038.6312153-UTR-H-paniculata_contig8276:7849..8905Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8276 7850..8905 +
1691481561.506237-UTR-H-paniculata_contig8276:7849..89051691481561.506237-UTR-H-paniculata_contig8276:7849..8905Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8276 7850..8905 +
1622931038.7210243-UTR-H-paniculata_contig8276:9681..99311622931038.7210243-UTR-H-paniculata_contig8276:9681..9931Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8276 9682..9931 +
1691481561.539513-UTR-H-paniculata_contig8276:9681..99311691481561.539513-UTR-H-paniculata_contig8276:9681..9931Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8276 9682..9931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931038.6476657-CDS-H-paniculata_contig8276:8905..92591622931038.6476657-CDS-H-paniculata_contig8276:8905..9259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8276 8906..9259 +
1691481561.5161774-CDS-H-paniculata_contig8276:8905..92591691481561.5161774-CDS-H-paniculata_contig8276:8905..9259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8276 8906..9259 +
1622931038.6667788-CDS-H-paniculata_contig8276:9543..96811622931038.6667788-CDS-H-paniculata_contig8276:9543..9681Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8276 9544..9681 +
1691481561.5250912-CDS-H-paniculata_contig8276:9543..96811691481561.5250912-CDS-H-paniculata_contig8276:9543..9681Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8276 9544..9681 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8276.16296.1

>prot_H-paniculata_contig8276.16296.1 ID=prot_H-paniculata_contig8276.16296.1|Name=mRNA_H-paniculata_contig8276.16296.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
MIQDVGFKLFVGNFVAVHITETMHHSTFTSNLDALFKKAKEDAMAGIKVH
KQSCTELAWKGPLLAGEIDLTTAANVEYIIFMTSYISPGSDELKRVGLAT
RQFRGSHKAEDILHWMRKVTTAFFGGLIGDDVDPQEVFIGFTVDQGSNVF
NAIDNLGIALIRQ*
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mRNA from alignment at H-paniculata_contig8276:7850..9931+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8276.16296.1 ID=mRNA_H-paniculata_contig8276.16296.1|Name=mRNA_H-paniculata_contig8276.16296.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2082bp|location=Sequence derived from alignment at H-paniculata_contig8276:7850..9931+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATGGTGTGCGCTACACAGAGTATCTCACAGCGGTGCCAGAGGCGCTGT
CCTCGTTCGAGCTCGATCTCACAGACTCGATGTTCTCGTACTGCTGCTGC
TGTGCTTTTCTGCTCTTCACAGTCTTACAATTTCCTCCTTCTTGTCCCAT
TAATTTTTGGGTTGTTAATAAAGCTCAAACGCTGCGACATTTGACTTTCA
AATCTAGTTTCACCCTGGAGCTGTAGAGCTAGTTCTCTACGTGGTACATT
TTTAGATGGGTTCATTTCAAAATACGTGATGATCGTTTCTTGAACATTAC
ATATTATCTGCATGTTATTACGTCCATACGAGTTTTTTTATTACAGCTGT
ACTGCGATACAAATCACAAATCACCGGTACACTCTCTTTTCTGCGTTATA
CCTTCACTCACGTCTTCATGACTTCGTGTTGCACACCATGTGTCACACAC
CAAACTACTTGTTTTGGATTAAAATATTTCGATCCCATGATAGAACCGTC
ATAGAATCAGAGCTCGAAGATGAGATATTGAAAACTTTCATAGAATTTGA
CCCTTCAGAATAATCGATTGTGATTGAAATCAACTGCACAGAAAACTGAC
GACATGAAAATGCAAAGCGCTCACGAGTCCTTGATTCTTAATCCTTTGTA
CTATCGTAGCTGGGTCTTCGCTTTATGCTTTTGCAAATGGAAATTCTATA
GCAGCTGCAGCCCTTCCCTCCTTGTCATCACCGTACCAAAACGCTTTGGG
TTTCAGCCAGAATGGCGAACACGTGATTCCCATTGTAAAACTGGACAGAA
AAATGCAAGTTCCAGACTGATGAACACGATGTTTTACCCTGACTACTGCC
TTAGTGTGTTCGTGTTCTTGATCAGCCGTGAACGGAGGGAGTTCTAAACC
CGGGAACTCACGCTCAAGGGATAAGGGCGTGGCGAAGGAAGAGGGGCAGC
TGGGCCAGATGGATATTTTCGTCATCGGCGACATTATTCCGCAAGACAGG
AAGCGTGCCAACCTTCTCTTGACTCTCTGGTCAACCATTAATCGAGGCCG
CAGAGCATGATCCAAGACGTCGGCTTCAAGCTGTTTGTGGGCAACTTCGT
AGCGGTACACATCACAGAGACGATGCACCACAGCACCTTCACCAGCAACC
TTGACGCACTCTTCAAAAAGGCGAAAGAAGACGCCATGGCAGGCATAAAG
GTGCACAAGCAATCGTGCACCGAGCTCGCGTGGAAAGGTCCATTACTTGC
TGGCGAGATCGATTTGACAACAGCTGCAAACGTTGAGTATATCATCTTCA
TGACGTCGTACATCTCACCGGGCTCAGACGAACTCAAGCGCGTTGGGTTG
GCAACCAGGCAATTTCGGGGCAGCCACAAGGCAGAGGATATTTTACATTG
GATGAGAAAGGTAAGGATTTGTTGGCTCAACCCTTTGTTTAATGCACCTT
CGTCATTCATGCGCTGAGTTTGGTGGAACTGCGGTTTCTTCGATTTCAAG
GGTGTCATGGTAAAATACCTCAGGAAAACGACGTTAATCAGGGTATCATC
GTACTGACGACACAACGTCTACGGCTTCGTCGTCTGTTTTTTCTTGATTT
ACTTCAGGTCTCCGATGATATTTCTACAGTTTTTTTCTTTTTTTCTCGGC
CTCTGCTGTTTTTGGCGTTGTTTTTGAAAATCGTAACCTGACAGGTTACC
ACGGCGTTCTTCGGTGGACTGATAGGAGACGACGTCGACCCTCAAGAGGT
TTTCATTGGTTTCACGGTGGATCAGGGTAGCAATGTCTTCAACGCTATCG
ACAACCTTGGCATCGCCTTAATACGGCAGTGATGTGGGCGCTGGAAGTTG
GCGGCACTGTGTAAGAACAAGTCCATGGAGAAAGACTTGAAAATACTTGA
AGTCCGGCGTCTTCAAGTCACCCCGCTGTGAGCAACGACAAGCTCAAGCT
GCTGCAACAGCTGGAGGAAGGGCTGAGCACGGTCTACGAGTTGGTCAGAC
GTAACGATACCAGGCGGGGATTGATGTAACTCACCTTCACCTCTGGAGTC
ATCCAAACCTGAACAGAGTTCACATTGTATGG
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Coding sequence (CDS) from alignment at H-paniculata_contig8276:7850..9931+

>mRNA_H-paniculata_contig8276.16296.1 ID=mRNA_H-paniculata_contig8276.16296.1|Name=mRNA_H-paniculata_contig8276.16296.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig8276:7850..9931+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCCAAGACGTCGGCTTCAAGCTGTTTGTGGGCAACTTCGTAGCGGT
ACACATCACAGAGACGATGCACCACAGCACCTTCACCAGCAACCTTGACG
CACTCTTCAAAAAGGCGAAAGAAGACGCCATGGCAGGCATAAAGGTGCAC
AAGCAATCGTGCACCGAGCTCGCGTGGAAAGGTCCATTACTTGCTGGCGA
GATCGATTTGACAACAGCTGCAAACGTTGAGTATATCATCTTCATGACGT
CGTACATCTCACCGGGCTCAGACGAACTCAAGCGCGTTGGGTTGGCAACC
AGGCAATTTCGGGGCAGCCACAAGGCAGAGGATATTTTACATTGGATGAG
AAAGATGATCCAAGACGTCGGCTTCAAGCTGTTTGTGGGCAACTTCGTAG
CGGTACACATCACAGAGACGATGCACCACAGCACCTTCACCAGCAACCTT
GACGCACTCTTCAAAAAGGCGAAAGAAGACGCCATGGCAGGCATAAAGGT
GCACAAGCAATCGTGCACCGAGCTCGCGTGGAAAGGTCCATTACTTGCTG
GCGAGATCGATTTGACAACAGCTGCAAACGTTGAGTATATCATCTTCATG
ACGTCGTACATCTCACCGGGCTCAGACGAACTCAAGCGCGTTGGGTTGGC
AACCAGGCAATTTCGGGGCAGCCACAAGGCAGAGGATATTTTACATTGGA
TGAGAAAGGTTACCACGGCGTTCTTCGGTGGACTGATAGGAGACGACGTC
GACCCTCAAGAGGTTTTCATTGGTTTCACGGTGGATCAGGGTAGCAATGT
CTTCAACGCTATCGACAACCTTGGCATCGCCTTAATACGGCAGTGAGTTA
CCACGGCGTTCTTCGGTGGACTGATAGGAGACGACGTCGACCCTCAAGAG
GTTTTCATTGGTTTCACGGTGGATCAGGGTAGCAATGTCTTCAACGCTAT
CGACAACCTTGGCATCGCCTTAATACGGCAGTGA
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