mRNA_H-paniculata_contig8273.16293.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8273.16293.1
Unique NamemRNA_H-paniculata_contig8273.16293.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8273.16293.1 vs. uniprot
Match: A0A8F0K0X7_9PHAE (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0K0X7_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 4.880e-45
Identity = 71/78 (91.03%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 SHFECGFDPYEDARNAFDVRFYIVAILFLLFDIETITLFPWAITSSQLPSLGYWSMMDFLFELVVGFIYAWLIGSLEW 234
            S +ECGFDPYEDARNAFDVRFY+VAILFLLFDIETI LFPWAIT SQLPSLGYWSMMDFL ELVVGFIYAW IGSLEW
Sbjct:   42 SSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWAITLSQLPSLGYWSMMDFLLELVVGFIYAWQIGSLEW 119
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BLAST of mRNA_H-paniculata_contig8273.16293.1 vs. uniprot
Match: A0A0U1XDC4_9PHAE (NADH-ubiquinone oxidoreductase chain 3 n=66 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U1XDC4_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 2.050e-44
Identity = 68/78 (87.18%), Postives = 74/78 (94.87%), Query Frame = 1 
Query:    1 SHFECGFDPYEDARNAFDVRFYIVAILFLLFDIETITLFPWAITSSQLPSLGYWSMMDFLFELVVGFIYAWLIGSLEW 234
            S +ECGFDPYEDARNAFDVRFY+VAILFLLFDIETI LFPWA++ SQLPS+GYWSMMDFLFELVVGFIYAW IGSL+W
Sbjct:   42 SSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWAVSLSQLPSIGYWSMMDFLFELVVGFIYAWQIGSLDW 119
[Close]
BLAST of mRNA_H-paniculata_contig8273.16293.1 vs. uniprot
Match: Q94YZ1_PYLLI (NADH-ubiquinone oxidoreductase chain 3 n=3 Tax=Ectocarpales TaxID=2877 RepID=Q94YZ1_PYLLI)

HSP 1 Score: 147 bits (372), Expect = 2.050e-44
Identity = 68/78 (87.18%), Postives = 74/78 (94.87%), Query Frame = 1 
Query:    1 SHFECGFDPYEDARNAFDVRFYIVAILFLLFDIETITLFPWAITSSQLPSLGYWSMMDFLFELVVGFIYAWLIGSLEW 234
            S +ECGFDPYEDARNAFDVRFY+VAILFLLFDIETI LFPWA++ SQLPS+GYWSMMDFLFELVVGFIYAW IGSL+W
Sbjct:   42 SSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWAVSLSQLPSIGYWSMMDFLFELVVGFIYAWQIGSLDW 119
[Close]
BLAST of mRNA_H-paniculata_contig8273.16293.1 vs. uniprot
Match: A0A4Y5T7V9_9PHAE (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T7V9_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 4.130e-44
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = 1 
Query:    1 SHFECGFDPYEDARNAFDVRFYIVAILFLLFDIETITLFPWAITSSQLPSLGYWSMMDFLFELVVGFIYAWLIGSLEW 234
            S +ECGFDPYEDARNAFDVRFY+VAILFLLFDIET+ +FPWAI+ SQ+PS+GYWSMMDFLFELVVGFIYAW IGSLEW
Sbjct:   42 SSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFVFPWAISLSQMPSIGYWSMMDFLFELVVGFIYAWKIGSLEW 119
[Close]
BLAST of mRNA_H-paniculata_contig8273.16293.1 vs. uniprot
Match: Q2TU99_DICDH (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TU99_DICDH)

HSP 1 Score: 146 bits (369), Expect = 5.690e-44
Identity = 66/78 (84.62%), Postives = 74/78 (94.87%), Query Frame = 1 
Query:    1 SHFECGFDPYEDARNAFDVRFYIVAILFLLFDIETITLFPWAITSSQLPSLGYWSMMDFLFELVVGFIYAWLIGSLEW 234
            S +ECGFDPYEDARNAFDVRFY+VAILFLLFDIET+ +FPWA++ SQLPS+GYWSMMDFLFEL+VGFIYAW IGSLEW
Sbjct:   42 SSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFVFPWAVSLSQLPSVGYWSMMDFLFELIVGFIYAWKIGSLEW 119
[Close]
BLAST of mRNA_H-paniculata_contig8273.16293.1 vs. uniprot
Match: E6ZET4_ECTSI (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZET4_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 1.680e-43
Identity = 66/78 (84.62%), Postives = 74/78 (94.87%), Query Frame = 1 
Query:    1 SHFECGFDPYEDARNAFDVRFYIVAILFLLFDIETITLFPWAITSSQLPSLGYWSMMDFLFELVVGFIYAWLIGSLEW 234
            S +ECGFDPYEDARNAFDVRFY+VAILFLLFDIETI LFPW+++ SQLPS+GYWSM+DFLFELVVGFIYAW IGSL+W
Sbjct:   42 SSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWSVSLSQLPSIGYWSMLDFLFELVVGFIYAWQIGSLDW 119
[Close]
BLAST of mRNA_H-paniculata_contig8273.16293.1 vs. uniprot
Match: A0A0U1WNN7_SARFS (NADH-ubiquinone oxidoreductase chain 3 n=22 Tax=Sargassaceae TaxID=3014 RepID=A0A0U1WNN7_SARFS)

HSP 1 Score: 139 bits (351), Expect = 3.250e-41
Identity = 63/78 (80.77%), Postives = 72/78 (92.31%), Query Frame = 1 
Query:    1 SHFECGFDPYEDARNAFDVRFYIVAILFLLFDIETITLFPWAITSSQLPSLGYWSMMDFLFELVVGFIYAWLIGSLEW 234
            S +ECGFDPYEDARNAFDVRFY+VAILFLLFDIET+ +FPWA + SQLP +GYWS++DFLFELVVGFIYAW IGSL+W
Sbjct:   42 SSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFIFPWAASLSQLPPVGYWSVIDFLFELVVGFIYAWQIGSLDW 119
[Close]
BLAST of mRNA_H-paniculata_contig8273.16293.1 vs. uniprot
Match: A0A8E8U4L6_9PHAE (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8U4L6_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 3.250e-41
Identity = 61/78 (78.21%), Postives = 72/78 (92.31%), Query Frame = 1 
Query:    1 SHFECGFDPYEDARNAFDVRFYIVAILFLLFDIETITLFPWAITSSQLPSLGYWSMMDFLFELVVGFIYAWLIGSLEW 234
            S +ECGFDPYEDARNAFDVRFY+VAILFLLFDIET+ LFPW +T S+LP++GYWSM+DF+ ELV+GFIYAW IGSL+W
Sbjct:   42 SSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWVVTLSELPAVGYWSMVDFIIELVIGFIYAWQIGSLDW 119
[Close]
BLAST of mRNA_H-paniculata_contig8273.16293.1 vs. uniprot
Match: A0A7S6UA31_9STRA (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA31_9STRA)

HSP 1 Score: 127 bits (318), Expect = 3.780e-36
Identity = 58/79 (73.42%), Postives = 68/79 (86.08%), Query Frame = 1 
Query:    1 SHFECGFDPYEDARNAFDVRFYIVAILFLLFDIETITLFPWAI-TSSQLPSLGYWSMMDFLFELVVGFIYAWLIGSLEW 234
            S +ECGFDPYEDARNAFDVRFY+VAILFL+FD+E + LFPWA+    Q  SLG WSM+DFLFEL+VGF+YAW IGSL+W
Sbjct:   44 SSYECGFDPYEDARNAFDVRFYLVAILFLIFDLEAVFLFPWAVGLGQQSTSLGLWSMIDFLFELLVGFVYAWQIGSLDW 122
[Close]
BLAST of mRNA_H-paniculata_contig8273.16293.1 vs. uniprot
Match: A0A0K2RWM0_9STRA (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Triparma laevis TaxID=1534972 RepID=A0A0K2RWM0_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.530e-35
Identity = 55/78 (70.51%), Postives = 68/78 (87.18%), Query Frame = 1 
Query:    1 SHFECGFDPYEDARNAFDVRFYIVAILFLLFDIETITLFPWAITSSQLPSLGYWSMMDFLFELVVGFIYAWLIGSLEW 234
            S +ECGFDPYEDAR+ FDVRFY+VAILF++FDIE + LFPWA++  Q+ SLG+WSM+DF+ EL VGFIYAW IG+LEW
Sbjct:   45 SAYECGFDPYEDARHTFDVRFYLVAILFIIFDIEAMFLFPWAVSLDQIGSLGFWSMVDFILELGVGFIYAWKIGALEW 122
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8273.16293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0K0X7_9PHAE4.880e-4591.03NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Pro... [more]
A0A0U1XDC4_9PHAE2.050e-4487.18NADH-ubiquinone oxidoreductase chain 3 n=66 Tax=Ph... [more]
Q94YZ1_PYLLI2.050e-4487.18NADH-ubiquinone oxidoreductase chain 3 n=3 Tax=Ect... [more]
A0A4Y5T7V9_9PHAE4.130e-4485.90NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Dic... [more]
Q2TU99_DICDH5.690e-4484.62NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Dic... [more]
E6ZET4_ECTSI1.680e-4384.62NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Ect... [more]
A0A0U1WNN7_SARFS3.250e-4180.77NADH-ubiquinone oxidoreductase chain 3 n=22 Tax=Sa... [more]
A0A8E8U4L6_9PHAE3.250e-4178.21NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Pha... [more]
A0A7S6UA31_9STRA3.780e-3673.42NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Sch... [more]
A0A0K2RWM0_9STRA1.530e-3570.51NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Tri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8273contigH-paniculata_contig8273:2645..2881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score107.5
Seed ortholog evalue3e-21
Seed eggNOG ortholog1089551.KE386572_gene3434
Preferred namenuoA
KEGG rclassRC00061
KEGG koko:K00330
KEGG TC3.D.1
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,map00190,map01100
KEGG ModuleM00144
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0044464,GO:0050136,GO:0055114,GO:0071944,GO:0098796,GO:1902494
EggNOG free text desc.NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
EggNOG OGs1RGUT@1224,2U72Q@28211,4BQBD@82117,COG0838@1,COG0838@2
EC1.6.5.3
COG Functional cat.C
Best tax levelunclassified Alphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931038.4384816-CDS-H-paniculata_contig8273:2644..28811622931038.4384816-CDS-H-paniculata_contig8273:2644..2881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8273 2645..2881 +
1691481561.4074616-CDS-H-paniculata_contig8273:2644..28811691481561.4074616-CDS-H-paniculata_contig8273:2644..2881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8273 2645..2881 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8273.16293.1prot_H-paniculata_contig8273.16293.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8273 2645..2881 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8273.16293.1

>prot_H-paniculata_contig8273.16293.1 ID=prot_H-paniculata_contig8273.16293.1|Name=mRNA_H-paniculata_contig8273.16293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
SHFECGFDPYEDARNAFDVRFYIVAILFLLFDIETITLFPWAITSSQLPS
LGYWSMMDFLFELVVGFIYAWLIGSLEW*
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mRNA from alignment at H-paniculata_contig8273:2645..2881+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8273.16293.1 ID=mRNA_H-paniculata_contig8273.16293.1|Name=mRNA_H-paniculata_contig8273.16293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=237bp|location=Sequence derived from alignment at H-paniculata_contig8273:2645..2881+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACATTTTGAGTGTGGATTTGATCCTTATGAAGATGCTAGAAATGCATT
TGATGTACGTTTTTATATAGTTGCTATTCTTTTTCTTCTTTTTGATATTG
AAACTATTACTTTATTCCCTTGGGCTATTACTTCAAGCCAATTACCCTCT
TTAGGTTATTGGTCTATGATGGATTTTCTTTTTGAATTAGTTGTTGGCTT
TATTTATGCGTGGCTAATTGGCAGTTTAGAATGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig8273:2645..2881+

>mRNA_H-paniculata_contig8273.16293.1 ID=mRNA_H-paniculata_contig8273.16293.1|Name=mRNA_H-paniculata_contig8273.16293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig8273:2645..2881+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACATTTTGAGTGTGGATTTGATCCTTATGAAGATGCTAGAAATGCATT
TGATGTACGTTTTTATATAGTTGCTATTCTTTTTCTTCTTTTTGATATTG
AAACTATTACTTTATTCCCTTGGGCTATTACTTCAAGCCAATTACCCTCT
TTAGGTTATTGGTCTATGATGGATTTTCTTTTTGAATTAGTTGTTGGCTT
TATTTATGCGTGGCTAATTGGCAGTTTAGAATGGTAATCACATTTTGAGT
GTGGATTTGATCCTTATGAAGATGCTAGAAATGCATTTGATGTACGTTTT
TATATAGTTGCTATTCTTTTTCTTCTTTTTGATATTGAAACTATTACTTT
ATTCCCTTGGGCTATTACTTCAAGCCAATTACCCTCTTTAGGTTATTGGT
CTATGATGGATTTTCTTTTTGAATTAGTTGTTGGCTTTATTTATGCGTGG
CTAATTGGCAGTTTAGAATGGTAA
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