mRNA_H-paniculata_contig8271.16292.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8271.16292.1
Unique NamemRNA_H-paniculata_contig8271.16292.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8271.16292.1 vs. uniprot
Match: UPI001E1BC9B8 (uncharacterized protein LOC116934501 n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BC9B8)

HSP 1 Score: 73.2 bits (178), Expect = 2.840e-13
Identity = 31/71 (43.66%), Postives = 49/71 (69.01%), Query Frame = 1
Query:   34 EEAQETRGFLYREAVGALMWAAMMTGPDVAYVVCTVTKFCENPRMAYKKAVETILQYVLSTADLGITYGSQ 246
            ++++  RG+ +REAVGAL++ A+ T PD+AY VC + KFC+NP   + KA++ I  Y+ +T + GI  G Q
Sbjct: 1120 QQSEGERGYSFREAVGALLYIALQTRPDLAYAVCRIAKFCQNPMNEHWKALDQIFGYLKATKEYGIWVGGQ 1190          
BLAST of mRNA_H-paniculata_contig8271.16292.1 vs. uniprot
Match: UPI001C9BC1AB (secreted RxLR effector protein 161-like n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9BC1AB)

HSP 1 Score: 71.6 bits (174), Expect = 3.440e-13
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    1 PLSKENGPRTQEEAQETRGFLYREAVGALMWAAMMTGPDVAYVVCTVTKFCENPRMAYKKAVETILQYVLSTADLGITY 237
            PLS E  P   EE    +   YREAVG LM+AA++T PD+ Y V  V++F  NP   + KAV+ IL+Y+  T  +GI Y
Sbjct:   16 PLSNEQSPVNDEEKVSMQEMPYREAVGCLMFAAILTRPDIMYAVSQVSRFLNNPGKEHWKAVKRILRYIQGTKYMGIKY 94          
BLAST of mRNA_H-paniculata_contig8271.16292.1 vs. uniprot
Match: A0A284S2Y9_ARMOS (Uncharacterized protein n=2 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284S2Y9_ARMOS)

HSP 1 Score: 71.2 bits (173), Expect = 1.350e-12
Identity = 30/79 (37.97%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    4 LSKENGPRTQEEAQETRGFLYREAVGALMWAAMMTGPDVAYVVCTVTKFCENPRMAYKKAVETILQYVLSTADLGITYG 240
            +S+E  P T  +  + R   YRE +G L+W +  T PD+A+ VC +++F +NP   +  A + +LQY+  T  LG+TYG
Sbjct: 1193 ISREQCPNTPSDVADMRDVPYRELIGGLIWLSTATRPDLAFTVCVLSRFLDNPGRPHWNAAKRVLQYLKGTRTLGLTYG 1271          
BLAST of mRNA_H-paniculata_contig8271.16292.1 vs. uniprot
Match: A0A060SPD4_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SPD4_PYCCI)

HSP 1 Score: 70.9 bits (172), Expect = 1.840e-12
Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = 1
Query:    4 LSKENGPRTQEEAQETRGFLYREAVGALMWAAMMTGPDVAYVVCTVTKFCENPRMAYKKAVETILQYVLSTADLGITYGSQ 246
            LSK   P +  E    R   YREA+GALM+AA+ T PD+A+ V T+ +F +NP   +  AV+ I +Y+L T  L + YG Q
Sbjct: 1077 LSKTQCPESPAEVARMRRVPYREAIGALMYAALGTRPDIAFAVSTLAQFAQNPGQPHWDAVKRIFRYLLGTRTLSLIYGGQ 1157          
BLAST of mRNA_H-paniculata_contig8271.16292.1 vs. uniprot
Match: W4JU83_HETIT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=3 Tax=Heterobasidion irregulare (strain TC 32-1) TaxID=747525 RepID=W4JU83_HETIT)

HSP 1 Score: 68.6 bits (166), Expect = 3.070e-12
Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 1
Query:    4 LSKENGPRTQE-EAQETRGFLYREAVGALMWAAMMTGPDVAYVVCTVTKFCENPRMAYKKAVETILQYVLSTADLGITYG 240
            LS E  PR    E +E R + Y   VGALM+AA+ T PD+AY V T+ ++  NP M +  A + +L+YV  T DL +TYG
Sbjct:  119 LSNEQSPRLYSAEWEEMRKYPYAALVGALMYAALATRPDLAYTVNTLAQYMSNPGMEHWHAAKRVLRYVKGTLDLALTYG 198          
BLAST of mRNA_H-paniculata_contig8271.16292.1 vs. uniprot
Match: Q45W65_PHACR (Polyprotein n=1 Tax=Phanerochaete chrysosporium (strain RP-78 / ATCC MYA-4764 / FGSC 9002) TaxID=273507 RepID=Q45W65_PHACR)

HSP 1 Score: 69.3 bits (168), Expect = 6.440e-12
Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    4 LSKENGPRTQEEAQETRGFLYREAVGALMWAAMMTGPDVAYVVCTVTKFCENPRMAYKKAVETILQYVLSTADLGITYG 240
            LSKE+ P T  E  E R   YR+A+GALM+AA+ T PD+AY V  + +F ENP M +  A+  +  Y+  T DL +  G
Sbjct: 1273 LSKEDCPSTAAEVAEMRHKPYRQALGALMYAAIATRPDIAYAVNQLARFAENPGMKHWNALRRVYAYLKGTRDLSLVLG 1351          
BLAST of mRNA_H-paniculata_contig8271.16292.1 vs. uniprot
Match: UPI001E1BC78C (secreted RxLR effector protein 161-like n=2 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BC78C)

HSP 1 Score: 67.4 bits (163), Expect = 1.370e-11
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 1
Query:   22 PRTQEEAQETRGFLYREAVGALMWAAMMTGPDVAYVVCTVTKFCENPRMAYKKAVETILQYVLSTADLGITYG 240
            P+++ E      + YREAVGAL++ A+MT PD+ Y V  V+K+C+NP  ++  AV  I  Y+  TAD GI  G
Sbjct:   23 PKSEGEMTTASPYPYREAVGALLYVALMTRPDICYAVGQVSKYCQNPDPSHWDAVVQIFAYLKGTADYGIWLG 95          
BLAST of mRNA_H-paniculata_contig8271.16292.1 vs. uniprot
Match: A0A0J7KAJ4_LASNI (Rna-dependent dna polymerase n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KAJ4_LASNI)

HSP 1 Score: 65.9 bits (159), Expect = 2.120e-11
Identity = 28/66 (42.42%), Postives = 46/66 (69.70%), Query Frame = 1
Query:   43 QETRGFLYREAVGALMWAAMMTGPDVAYVVCTVTKFCENPRMAYKKAVETILQYVLSTADLGITYG 240
            ++ R  LYR+ VG+LM+ A++T PD+AY V T++KF ++P   +  A + +L+Y+  T D+GI YG
Sbjct:   23 EDPRNVLYRQLVGSLMYLAVVTRPDLAYTVATLSKFLDSPTDEHWNAGKRVLRYLAGTTDIGIMYG 88          
BLAST of mRNA_H-paniculata_contig8271.16292.1 vs. uniprot
Match: A0A8H6Y342_9AGAR (Transcription factor n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H6Y342_9AGAR)

HSP 1 Score: 66.6 bits (161), Expect = 3.660e-11
Identity = 31/80 (38.75%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    4 LSKENGPRTQEEAQETRGFLYREAVGALMWAAMMTGPDVAYVVCTVTKFCENPRMAYKKAVETILQYVLSTADLGITYGS 243
            L+ E+ P++  +    +   YREAVG+LMWAA+ T PD+A+VV  ++K+  NP   + +AV+ + +Y+  T D  +TYG+
Sbjct:   57 LTTEHCPKSIRDIAAMKRIPYREAVGSLMWAAVGTRPDIAFVVGVLSKYLNNPGPTHWEAVKRVFRYLQGTKDWRLTYGA 136          
BLAST of mRNA_H-paniculata_contig8271.16292.1 vs. uniprot
Match: A0A0J7K988_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K988_LASNI)

HSP 1 Score: 66.6 bits (161), Expect = 5.700e-11
Identity = 30/58 (51.72%), Postives = 44/58 (75.86%), Query Frame = 1
Query:   64 YREAVGALMWAAMMTGPDVAYVVCTVTKFCENPRMAYKKAVETILQYVLSTADLGITY 237
            YREAVG+LM+AA+++ PD+ + V  V+KF  NP   + +AV+TIL+YV +T D+GI Y
Sbjct: 1019 YREAVGSLMFAAVVSRPDIMFAVANVSKFLSNPSREHWQAVKTILRYVKNTLDVGIEY 1076          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8271.16292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E1BC9B82.840e-1343.66uncharacterized protein LOC116934501 n=1 Tax=Daphn... [more]
UPI001C9BC1AB3.440e-1345.57secreted RxLR effector protein 161-like n=1 Tax=Ve... [more]
A0A284S2Y9_ARMOS1.350e-1237.97Uncharacterized protein n=2 Tax=Armillaria ostoyae... [more]
A0A060SPD4_PYCCI1.840e-1243.21Integrase catalytic domain-containing protein n=1 ... [more]
W4JU83_HETIT3.070e-1245.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q45W65_PHACR6.440e-1244.30Polyprotein n=1 Tax=Phanerochaete chrysosporium (s... [more]
UPI001E1BC78C1.370e-1143.84secreted RxLR effector protein 161-like n=2 Tax=Da... [more]
A0A0J7KAJ4_LASNI2.120e-1142.42Rna-dependent dna polymerase n=1 Tax=Lasius niger ... [more]
A0A8H6Y342_9AGAR3.660e-1138.75Transcription factor n=1 Tax=Mycena sanguinolenta ... [more]
A0A0J7K988_LASNI5.700e-1151.72Integrase core domain protein n=1 Tax=Lasius niger... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8271contigH-paniculata_contig8271:9863..10108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue5.5e-10
Seed eggNOG ortholog67593.Physo131909
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931038.3873038-CDS-H-paniculata_contig8271:9862..101081622931038.3873038-CDS-H-paniculata_contig8271:9862..10108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8271 9863..10108 -
1691481561.3930256-CDS-H-paniculata_contig8271:9862..101081691481561.3930256-CDS-H-paniculata_contig8271:9862..10108Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8271 9863..10108 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8271.16292.1prot_H-paniculata_contig8271.16292.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8271 9863..10108 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8271.16292.1

>prot_H-paniculata_contig8271.16292.1 ID=prot_H-paniculata_contig8271.16292.1|Name=mRNA_H-paniculata_contig8271.16292.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
PLSKENGPRTQEEAQETRGFLYREAVGALMWAAMMTGPDVAYVVCTVTKF
CENPRMAYKKAVETILQYVLSTADLGITYGSQ
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mRNA from alignment at H-paniculata_contig8271:9863..10108-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8271.16292.1 ID=mRNA_H-paniculata_contig8271.16292.1|Name=mRNA_H-paniculata_contig8271.16292.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=246bp|location=Sequence derived from alignment at H-paniculata_contig8271:9863..10108- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACTTTCCAAGGAAAATGGACCACGGACCCAGGAAGAAGCCCAGGAGAC TCGAGGTTTCTTGTACAGGGAAGCAGTGGGAGCACTCATGTGGGCAGCGA TGATGACGGGGCCTGATGTTGCATACGTCGTTTGCACTGTTACAAAGTTC TGCGAAAACCCCAGAATGGCGTACAAAAAAGCTGTGGAAACGATCCTGCA GTATGTGTTAAGCACCGCAGACCTGGGCATCACGTATGGCAGCCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig8271:9863..10108-

>mRNA_H-paniculata_contig8271.16292.1 ID=mRNA_H-paniculata_contig8271.16292.1|Name=mRNA_H-paniculata_contig8271.16292.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig8271:9863..10108- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACTTTCCAAGGAAAATGGACCACGGACCCAGGAAGAAGCCCAGGAGAC
TCGAGGTTTCTTGTACAGGGAAGCAGTGGGAGCACTCATGTGGGCAGCGA
TGATGACGGGGCCTGATGTTGCATACGTCGTTTGCACTGTTACAAAGTTC
TGCGAAAACCCCAGAATGGCGTACAAAAAAGCTGTGGAAACGATCCTGCA
GTATGTGTTAAGCACCGCAGACCTGGGCATCACGTATGGCAGCCAACCAC
TTTCCAAGGAAAATGGACCACGGACCCAGGAAGAAGCCCAGGAGACTCGA
GGTTTCTTGTACAGGGAAGCAGTGGGAGCACTCATGTGGGCAGCGATGAT
GACGGGGCCTGATGTTGCATACGTCGTTTGCACTGTTACAAAGTTCTGCG
AAAACCCCAGAATGGCGTACAAAAAAGCTGTGGAAACGATCCTGCAGTAT
GTGTTAAGCACCGCAGACCTGGGCATCACGTATGGCAGCCAA
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