mRNA_H-paniculata_contig827.16289.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig827.16289.1
Unique NamemRNA_H-paniculata_contig827.16289.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig827.16289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig827contigH-paniculata_contig827:1398..2229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF227
Ec32 orthologEc-25_001830.2
Exons2
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931038.074561-CDS-H-paniculata_contig827:1397..16301622931038.074561-CDS-H-paniculata_contig827:1397..1630Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig827 1398..1630 -
1691481561.2485616-CDS-H-paniculata_contig827:1397..16301691481561.2485616-CDS-H-paniculata_contig827:1397..1630Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig827 1398..1630 -
1622931038.0913126-CDS-H-paniculata_contig827:2090..22291622931038.0913126-CDS-H-paniculata_contig827:2090..2229Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig827 2091..2229 -
1691481561.2672048-CDS-H-paniculata_contig827:2090..22291691481561.2672048-CDS-H-paniculata_contig827:2090..2229Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig827 2091..2229 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig827.16289.1prot_H-paniculata_contig827.16289.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig827 1398..2229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig827.16289.1

>prot_H-paniculata_contig827.16289.1 ID=prot_H-paniculata_contig827.16289.1|Name=mRNA_H-paniculata_contig827.16289.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
DDRLGYPGDQRAVQSLSQHEKTEGGDAVAEQAAIDELRKSSFMLITEDLC
GEAQPRVSDTRNCAATAAATPATSTSTTATTEDSINDTHCQRAQNEDGRR
WAQVGAMHLRHAKFALSTTARLHA
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mRNA from alignment at H-paniculata_contig827:1398..2229-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig827.16289.1 ID=mRNA_H-paniculata_contig827.16289.1|Name=mRNA_H-paniculata_contig827.16289.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=832bp|location=Sequence derived from alignment at H-paniculata_contig827:1398..2229- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGATCGACTCGGGTATCCCGGAGACCAGCGGGCGGTGCAGTCATTGTC
GCAACATGAGAAGACAGAGGGCGGTGATGCTGTAGCGGAGCAAGCGGCTA
TTGACGAGCTTCGGAAATCGTCCTTCATGTTGATCACAGGTTGCCAAAAA
GTACGCAAGACACTGCTCGTGTGTGAGTTTTCCCCCAGCGTTTTGGATTT
TGTTTATACGGTGTTGGTGTCTTTGCGTGTATGGGGGCAGTAAAATTGAG
TGTGTTGTGCGGGGGAATGTGAAGGATTTTTTTTCTTCGGTTACACGTCA
TTTATTCCAACGCACTGTTGTCGAGCCAGCTTGTTTTGAATCGGACGATC
CGTTTTCGCTGTGGTTGTTGCTTGTAGTTTTTCTCTCCTCTAAGTTACAG
TGAGCTGTCCCGTGATCTGCAGTTCCGGCACAAGTTTCAAATTGGTTTAA
AAGTTTCCACTAGTTGTTGTCACCATCTCGTAACGTGTTCTTAGCGAAGC
CATCTGCCTATCTATCTGTCTGTCTGTTCCTCTCTATTTTCCACCACCCA
AATCCAAGTCAACAAACTATCCCGCGCCTGTGGCCATATTTCATTTCAGA
GGATCTATGTGGCGAGGCACAGCCGAGGGTAAGTGACACGCGAAACTGCG
CTGCCACTGCTGCTGCTACTCCGGCTACTTCTACTTCTACTACCGCAACG
ACCGAAGACAGCATCAATGATACCCATTGTCAACGGGCTCAAAACGAAGA
TGGGAGACGATGGGCGCAAGTAGGAGCCATGCACCTACGCCACGCGAAAT
TTGCGCTTTCTACGACGGCGCGCCTTCACGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig827:1398..2229-

>mRNA_H-paniculata_contig827.16289.1 ID=mRNA_H-paniculata_contig827.16289.1|Name=mRNA_H-paniculata_contig827.16289.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig827:1398..2229- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGATCGACTCGGGTATCCCGGAGACCAGCGGGCGGTGCAGTCATTGTC
GCAACATGAGAAGACAGAGGGCGGTGATGCTGTAGCGGAGCAAGCGGCTA
TTGACGAGCTTCGGAAATCGTCCTTCATGTTGATCACAGGACGATCGACT
CGGGTATCCCGGAGACCAGCGGGCGGTGCAGTCATTGTCGCAACATGAGA
AGACAGAGGGCGGTGATGCTGTAGCGGAGCAAGCGGCTATTGACGAGCTT
CGGAAATCGTCCTTCATGTTGATCACAGAGGATCTATGTGGCGAGGCACA
GCCGAGGGTAAGTGACACGCGAAACTGCGCTGCCACTGCTGCTGCTACTC
CGGCTACTTCTACTTCTACTACCGCAACGACCGAAGACAGCATCAATGAT
ACCCATTGTCAACGGGCTCAAAACGAAGATGGGAGACGATGGGCGCAAGT
AGGAGCCATGCACCTACGCCACGCGAAATTTGCGCTTTCTACGACGGCGC
GCCTTCACGCCAGGATCTATGTGGCGAGGCACAGCCGAGGGTAAGTGACA
CGCGAAACTGCGCTGCCACTGCTGCTGCTACTCCGGCTACTTCTACTTCT
ACTACCGCAACGACCGAAGACAGCATCAATGATACCCATTGTCAACGGGC
TCAAAACGAAGATGGGAGACGATGGGCGCAAGTAGGAGCCATGCACCTAC
GCCACGCGAAATTTGCGCTTTCTACGACGGCGCGCCTTCACGCC
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