mRNA_H-paniculata_contig8268.16287.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8268.16287.1
Unique NamemRNA_H-paniculata_contig8268.16287.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8268.16287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8268contigH-paniculata_contig8268:99..8731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size215
Cds size189
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8268.16287.1prot_H-paniculata_contig8268.16287.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8268 124..8731 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931037.8893993-UTR-H-paniculata_contig8268:98..1231622931037.8893993-UTR-H-paniculata_contig8268:98..123Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8268 99..123 -
1691481561.2034771-UTR-H-paniculata_contig8268:98..1231691481561.2034771-UTR-H-paniculata_contig8268:98..123Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8268 99..123 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931037.906374-CDS-H-paniculata_contig8268:123..1911622931037.906374-CDS-H-paniculata_contig8268:123..191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8268 124..191 -
1691481561.214864-CDS-H-paniculata_contig8268:123..1911691481561.214864-CDS-H-paniculata_contig8268:123..191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8268 124..191 -
1622931037.926816-CDS-H-paniculata_contig8268:8610..87311622931037.926816-CDS-H-paniculata_contig8268:8610..8731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8268 8611..8731 -
1691481561.2226682-CDS-H-paniculata_contig8268:8610..87311691481561.2226682-CDS-H-paniculata_contig8268:8610..8731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8268 8611..8731 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8268.16287.1

>prot_H-paniculata_contig8268.16287.1 ID=prot_H-paniculata_contig8268.16287.1|Name=mRNA_H-paniculata_contig8268.16287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
SLFPALKENLPWLEDEEVVAQQDGATSPHGERQAGGTQRFGYNLGRDHDG
VLVAKCQVLSLR*
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mRNA from alignment at H-paniculata_contig8268:99..8731-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8268.16287.1 ID=mRNA_H-paniculata_contig8268.16287.1|Name=mRNA_H-paniculata_contig8268.16287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8633bp|location=Sequence derived from alignment at H-paniculata_contig8268:99..8731- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTTTATTCCCAGCATTGAAGGAAAATTTGCCGTGGTTGGAGGACGAGGA
AGTGGTTGCACAGCAGGACGGAGCGACCTCCCCACACGGTGAAAGGCAGG
CCGGGGGAACTCAACGATTTGGTAAGAACGTCACTCTCGTAACTCAGCCT
GCGCAGTCACCAGATCACAACATGAACGACCTGAGGTTCTTTGTATCTTT
GAAAAGTAGGGTTTGGAGGGAGCGTTACGGTACGATAGACGGCCTTGTGG
AGAGGGTAGAGAGCATTTACGATGCGTACGACGCGGCGACCTTAGAGAGG
CGTGGCGGAGCCTCTTTCAGCGATACAACAAGGTCTTAAAGGCGCTAGGA
GGTAATGATTTCAAGGTACAGCACAACGCAACTAAGAAAAGGTAGCGTGT
GGGAAGTCGGCCATGATCGGTCAAAGTCGACTGAGAAGGTTTCGACGCGG
CGGTAGAATGGCGGATTGATGGGAACGAGGAAAGCTGCGATTTTTTTATA
ACGTGAACAACACCAAGGAATCCGACGCAAAAACACATTTTTGATTCGGA
GGTCATTGCAACAACGTATACCCTTAACGTCGCACACTTATGGGATGCAG
GGATTATAAATATCTTATGATGTGCTATCATCTGTAAATGTATAGGCATC
CACACCGAGCCATATAATTGCAGTTCAAGATAGGTCAACCACTGACCTCT
AGCCAACAAGATGTTTCTTTGTACGAATATACATTTGTAAGACCATACGA
GGTGTGGCCCATCAGTGTTAAGAGCATGTTTGTTTGTTTTGTCTGTTCCC
GTTATTGAGCTTCGGGGACTATACTCGGCATATGCTGCATGAAAGTATCT
TCACGCGACTCCTTTTCTAAGCCTCCGGCTTGTGATATATTTCGGCCGAC
ACGCAAGGACTTTCAAATGCAGCTCCAGCAACACACACTCTGTGCATAAC
GTACCTGCCAGTTTTCGCGAGCTTCACACACGCTGTTACAGGTAGTTAAA
TTACCGGAATTCGGAATTCAATCGATTTGGGAAAAATAGAAAACAATTTG
AATATCCCTTGTTTGAAGTGGTGTCACGCTGACGCCCACCTAGCATCAAT
TTACGTATGTCAGTGTTGTTTTTGGATGTGCGTCGACGTTTTGATGGCCA
ACGTTTCATGCCATGAGTCTAATATCGGCAAATTCGTACAGTCAACGGCC
ACAAAATCTGTTGACCAGAGTAGTTTGCGCTTGGACAATTTTTTGAGAAA
TGGTCATATTACACTACTTGGCGAGGGTAATGTGGCTGCGACTCGAAGTA
TTCCTATGCAACGCAAAGTCGACTTGAAGGAATTTGTAGCTGAGTTTTGG
TGCATATCGTGCACCAATCGGCGCTAAAAACAGAACCTGTAGTTCAATAG
TTGGAGCGTTTGCCAGATGGGAAGGCCAGGCCAAGCCCGAAAGGCTGCTG
CCGGAAAGCGCTTGATGCACAAAACGTTTCGAGCAAGGGAAAACGCTATT
CAAAATGTACACGGTGGTAGTTTATGGATGAAATAATATTAACAACGGGT
GGGTTGATGTGCACGTGCCTGTGCTGCAACGGAAGTAGAAGAACATGCCT
TGAGGGTCGACACGATCAATCAATCGGGACCGACAAACCAGGAGATACTA
TGGAATACAATGAAAAACTTGATGTGCAGGCATTGGTCTCGTGTTAGTCT
TGCACGACCCGCGGACGGCAGACGCTGCACCATCTTGACCAAGATACGGA
TAGACAGCCAGTGCCATCAGTATGTACTTGATCGTACATGCGGGTCTTAC
CGAAGAGACCAAGACACAAATTTTGATATGAGTTTTGATGTGATACGTGA
TTGTGGGGGTACAGAAAGCTTTTTTATTATGAGTTTTAGTGTGGCCCGTT
TGAAGCATGGAACATGTCGAACAAATTTCTACTTTTTGCTGTCCCATGTA
CAAGTTTCGAGCGCCGGCGCTCCCGCTTGCCAGAGTTTGGGGACCTGGAA
GCCGGGTACGCCTCAGTTACCCGTAGTCGATAGGACTCGCGTGAAAGGCT
TGCATGGCCAAGAGTGTCGTATTGATGGAGATCGCTGTGGTGATCAGAAA
CAGTTTGTAGCGAGCAATACCCCGCATCGGCAGTTCTTCAGTAGACAAAC
ATAACATGACAAGAAACTGTTTGTAGGGGGATCTAAATCGTGGGTGCGCA
TTTTGTCATTACTGAGGTAGTCTCCGCGGATACCACACTCCAGGTCACTA
ATCCATCTCATGTGAGTCGTGTGGGATGTGGGTGACTGAGGGATGTCCGA
CTTGAAGGCCTCGATCATCAACCCATGAACTGTACGCTTTCTCCACAGAA
AAACATTATTTCTACTGAAACGATTAGTGACTGTTCCGAGCACGGTTGCT
TCAAAATCTTGACGCCGGCCTTTGAATCCAGATGTGTCCGTTGTGCTATC
TGATATATCACTTGGGATGATATCGCCAACTTTTTTGGGTTTTATCTGAA
TCGACTAAACTCCGCTCGTCGATTATCTTACTGCCTGTGACTGTGTTTTG
CAATGAAGTGAGTGATATTATCCACTTTCACTTCAATAGTGTGTGTTTTA
GTATGACCCAATATTGCTTCTGACATGCCGTATTCCTACAGCGACCACCA
TGCGAAAGACATGAAGTCCGCAAGTTGTAATTGATCAGATGGAAGCTCCC
GCGGATTTGTATTTGGAAGGTATTCGGAGTATGCGTGATTCTTCGAAATG
AGCAGATTCCATGGTGATTGCTGGTATGTTTTAGGCAGGAGTTTAAAATG
TATCTGCTTCAAGGTTCAGCACGAGCGCTTTTGGTCTGTATGTGCCCTGG
AAAATGTACGGCTACGGCGAGTACTGTAAAAACGGACAAACAGTACGGGT
GAACAGTTCATTTTTTGTGCCCACGCATGGTGCAACTCGGGCGAATACTT
TCAGACTTCCGTCTAGCCGTTTTAAACATCGGGTAGATAAGATCTTTCAT
CTCTCGTACCGAATATTTGCACCTATGGGTCGTCCTAAAGTAGCGGAAGT
AACCTGTGCGAGCAAGTGTGTGCCATCATACCTTGTGGTGGCTTCGGCGA
AGGAGATCGAAACAAATATATTCGGAATCCTTATAAACAATTACTTTAGG
TGCAGAATTTCATCCAAATATTTGGGGCTTTTTCTCAGCGGTTTTCATGC
AGGCGTTTTCAATGATATTTTACTCGCTTTTTTAGGCGGAATGGAATTCA
ACATGTTGAGGATACCGGGATTATCGGGGGAGTTTTATTGGAAGCGAGGA
CGCCGTAAACATCCGTTGTTAGTAAAGATTTTCTTTGTGAAATACTTTCA
CTGAAATTACCGTCATGTACACTATTGGATGTCCATCACTGTATGTACCA
ATAAAATGGTGCAGTCGACTCTACGATGAGAAGGTCGCAGACCAGGCCTC
TTTCGTCAGGTCTGTAATGAGCAACCACGCTTGCGCTTCGTTGCGACCTC
TGTCTTCCGCTTTGACGCTGCTACTCTCTCGTCGCACACATGTTTTATCG
CTGGTGGCATGGATGCGCACAGTGTACCAGTTGCGTTTCGTCGTGTTCTT
TGCCCTCTCAGCTTTGATAAACCCAGCACCGCTGGGCAGGGACACCTTTA
TTGCGTAAAACACATGATCTTCAACCTTAACGCCACTACCGCGGCCTGTA
TCATAACTAACTGCAGCGGCATGCAGATGTTTATGTGCTACAGACCGTGA
TGTGGAGGTATAAGTGGATAATGACAATTGTATGCATCCTACGAAACAAC
ATGGCTAAGCAATACCCCACCTTTGGGTTTTTTCAACTCACGGTAGAGTG
GAGAGATATGGCTCGTGCTAGATATCGTTCGAAACCTGATATCACAGGCT
TCTCGAATCCGTCCTCAAATGATGTCATCTCATACTGACGAGAAATGAGC
AGAAAATCTCATTTTTATCATTCCGAAACATGTAAATCAGCGTTCGGGAT
TCATGAAATTGTAGCAAAGCTCACGGGATTTATTGAAAAGTTCGTAATGA
GAGCTGTCATCCAGTAAAAGCTTTTCCACCGGAGGCGCCGCCCTGAGAGA
GATAAAAACCAAAAGACCCCTCAGCGTAGATGGTTACTTCCGTCAGTTTG
TAGGTATCGATACTTCATGCTCGATCTGTATCCGGTTCCATGGCTTGTTC
ATACCCCCACCGCTCGTTAGCATATGTGTGTCCACAGTTGTCCTTAGGAG
CGTGATTTGTACATGATCGTCATTGTTGATCGGTACCCGCACCACTCGTT
TGCACATGTTCGGCCAAAACGTTCGGTATGAGCGGTATGATCCGCAAATG
CTTTTCCCCGTTGATCGGTAGCCGCGCCGATCGCTAGCATGATAGCACAT
GTTTTCCCTCCTCCGATCGGTACCGTGAAGATCTTGTGTACATGTTTGCC
AGCGGCTAAGCAGTACTAACCAACTCGTACCGATTTTAATCGGTTTACTG
TGTGACACCTTTTCGAAGTACCCCTATTCGTACGGGGAATAAAGCGATTC
AAATCCAGGAACAGTCGAATTTCGAGTTACAACGTATTTTCTCCTGCCCG
AAGCAAACAGCATACGCGGAAGACTGTTATTCCTGTAGACGACTGGAGCC
GACAATATTCGATAGTATGCCAACGCTCTGTGGTGTGTCATGGGAAATTA
TAGCGCAACCGTCGTCCTTTCGGTTTGAACAGTCTGTCGAGCTGCGATGT
TTGACTTGCATACTCTCACACAGATGAGTGTCAGGACATCGCGCAAAGAG
TCAGTTTCAATCGTCGCTCTATGAGACGACCTGCACCGTGTGCTGCCTGC
TCTTAGCACGTGAAAATAATAGTATACCTCCAGAAGTGGCTGGTTGGTGC
GATCACCACTTTTCCCAGTTCCGAATGTCGGCCTGCCATGAGAATCGACC
CCCGTCTGGTGATTTTCTTGTTTTGTTGAATATATTATGCATGGCATGGA
TCGACTGGATAAACGGTATCTCGGCGAAATAACGTATGACTCCGCCATAG
TGCATCGCAAACTTGGAATAGACATTGTTCAACCGGAATTCTGCTAAATT
CACCACGTCTGTTGCCCAACATGTATGGTATCTATTGTGGCCCATGCCTT
TCATATTTGAGAGGTGGTTGTAATTTTTTTTCCGAGTTCGTTGGCGCTTT
TCATAGCTTCGATGCGACCATTAATCGTGACACAGCATGGTGTAACAAGA
TGAGTGGCAGACTTTCTCAAGAGGCCAGCCGGAGCATCACACCCACTGAA
ATGCTGAAACTCGGCGATCTGTTGTCGTAGCTTTGGCCAAGCTCCAGTAT
TTTCCACGCTGAAATTGTTCCGCCCCATCGCCCACAACCATGAATATACT
TGAAACTTGGCAACACAGCCTCAGTGTCGTTCAATGATCGGTTGGACTGG
AATCGTCAACGTAAGATGTCCCGATCGACGAATGAGGTATCATTAGACTA
TACGAAGTGCAAACGAAAGGTGCACAAGAGCATGTCGTTCGGTTTACCAT
CACACAGTTAGGGGTGCGCTCAAGTCCTCAATAGTGCTGAATAGTCTGGT
AATTTTCCGCAAAGACCACGTAATTTTTCGCAACGACCACGTCTTTATTA
CCGGCTTTTTAGAGGGTTTGGGCCAAAAAAGAAAAAATATATAGTTGACG
TGACCCCCAAAAACACACACACACAAGCACGAGAGTCCCAACGTCACTTG
ATAATAATAAAAATAACCATAATAACCACCGAGAGACCCAGTGTCAGCTA
TAACAAGAATGAGTAGTCCCGAGAGAGGCAGGATATTCCAAATATACGAA
AAGATGAACAACCCTGAAGAAGCCATCAGAAAGACTGAGGAGCTACATAC
AGAATAGAGAGACTGCGCCACAGGCGAGAGCTGGCTCTCACTGCGTCCCT
TTGAGTGCAACAACACTAGCATCTGCGCACACAGCACGCACGGCATCCCA
CACCCGCCCGAGTAGACCGCATCCAGTGGCCGGACAGCAATGGGAAAATA
GCCGACCACAAGCAAGAGCAGCCCCTCCCGACCGCTGCTACGACATGCCA
GGATACAGCAGTAGAAGCAGCAGCAGCGACCGCACCTTCTACCATCTATG
CCACACGCATTGGTTGTCTCCTGCACATCCTCCACATCGCCGTGACGTCA
GGGGTGTAGAGTGAGTGCTTCATGGGCACCCTTGGCACGGGATCGTGGCA
TGAGTGGCCGCATCAACGTCTTGTAGCGTTGGTTGGTTCTGTCTGGTAAA
ATACCAGCAGAAGCGACTTAAAATATTGGATGCGCGACGAAGCAGAGCTG
CTGCTGCTCTGTTAACCACGATGTCCCCTTTTATCATGTACTGGTACAGC
TCACAGCTAGACGGTAAAAAGGCCGAGCAAAGCTAAGTTTCGAGTGCGTT
GGGACCCTGAGGAAGTTGGTTACAACAACGAGCTACAACCATTGCACTAT
GCAACACGAATGATGCCCCTACGACCACCCAACGTAACTCTAACGACCGG
ATGTGTGAAAATTATTTACGTTCGAAAAGGATGCCCTCTCCCGCAGTCTA
AATTCGAGTAGTTTTGGGTGCATTTTTGATGTTGATGGGCCAGTTTAAAT
TCGAGTAGTTTGGGGTAGTTGTTTGTGTTGACAGGCTATCTTGTAAATAT
ATATACTCCTCAGCAAGGTCCTGGATTGGGGTGCGGTTTTTTGCTTCGTG
TGCGCGAAAACCACAGCTAGGGGTTCATCTTACGAATTTTGAAGTCACGA
GGGCGAAACATGTTCACAGAGATGACAGCAAAAACAACCACTATTTATTG
GGGCGTTTGGAATTCTCATAACGCAGATTAAATGTCCAGGAAGATCAAGC
CCTAGATTAGGCACACACCCAAGGGTGTGTTGAGTCTCACAAGCCAATTC
CTACCTTGTATCGAGAAATACATATTACAAGTGCGTGGAAACCCGACACT
GAATACAAATACTATGCGGGATGAAGGTGGCATTGTCTATCAGGGGATAA
ACAAGTTTTGTTTTTCTTCATTCGGCCCTTTATCATGTGATCGTTGTCAC
CAAATATGGGCTGCAAATCGGGGTTAGGCGCACCCCTAACGGTATTCGTT
TTCTGGAAAGATGGGAGATTTACATATAAACCCTCTCGGAACTGTCCCCT
CCCGTCTCGGATGCGAATTCTTCATCAATTCTCCGGATTGAAACAAGCCT
TGATGAAAATCGTGGGTTCACGGCTATATGCAGCGGGAGCTAGAAGAGGG
CAGACGGAGAAACGTTCACCCAACTAATCTTAAGCCTCCCTCGGGATGAA
GGTGTCCATTTCAGTGCTTCCCACCACACAAGCAGTCCGAAAACTAGAGC
CAAAGAAACCAAAATCGTGAGTTCGTACACTAAAATTACATTTCCAGTTG
TGCAAGTTGGGTATTGCGCGACAGGTGCTCTTCAGCGCTCAGGTGTCATA
CACCATAGCATAGAAGAGCAGTGAGCCTCGCGCAGAGCAATATGCAGACA
TTACACACACACGCGTGGGATACAGCAACCCCTGGCCGTTCCGGGCTCGC
AAGAGTAGAACAATGACGCCAAGGTGGTGTATTCTTGGAAACCAGGTCCG
ACGCAGCGCGCTGCATGATTGCCAACTTTGCTGTCAGTAGTATACAGGCG
GTACAGCAGTAACTTTTGAAGAAAATATAGCTGCCCCAAGCTACTGTGGA
CGGTCGAGACAGCTAAAGTGAGGAGACTTGGAGGCACGAGAGCGTTGAAC
TACACACAGTACAAAGACGAAGCACTAGCATTTTGAACGTCTCTCCGTTG
AGTGGAAAATACTTTGAGTGAAAATAATTCGATACTGGGCAAGCAGCAAC
GACATGTGTCAGAGCTTGCCGTCATCTTCCACGCAGACTGCAGTTTGACA
CCCTTTGGGCTTTCACTCCGAGCAGGCGCACGTGTTACGCGGCATCACCT
TGTGTGGCAATATGCCTGAACCTCGAATGCTTCAAGTACCATTTCGGTAT
TTCCCCAGCGCACCGGGTCTGAGAGATGACTCACTAAAGGACACAAAAAA
TTTGAAAAGAACGCAATCAGGCCTTGGTCTAAAATCGGCAGTCTACAGAT
TTTCAGAGTCGAAAGGGTTGACTATATACTCCTGATGCACTACGAATACA
GGGCCTTCTACCGATGTGCTGCTTGTCCAGTGAGTGCATGCCGTTCTAAG
CACATGCAACGTTTGAAGCATATGCATCGAGCTGCGGAGAACAACCAACT
TACGATATGGATGCTAAAGCCCTGTCTAAGTTGGCGCTTCCGTATTCGTT
GAGGCTATATGGTCGTACGAAGTGCAGAGGAAATATTTTGTCGATTCACA
ACATGATACGCCTGATCTGCCTTCGATCGTGCCTTCATAGTTGAGTGTGC
ACTTATCTGATATAACGTAGCTGCTGTATCATCATCGCTCACACGCCCTG
TGGTAATCTCGCCATTATACTGCGCCCTATTATCCCCAAGGTTACAATTT
AGGGAGGGATCACGACGGCGTTCTGGTCGCGAAGTGTCAAGTGTTATCGC
TACGATGATTCAACTTGTACAGGACGACACGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig8268:99..8731-

>mRNA_H-paniculata_contig8268.16287.1 ID=mRNA_H-paniculata_contig8268.16287.1|Name=mRNA_H-paniculata_contig8268.16287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig8268:99..8731- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTTTATTCCCAGCATTGAAGGAAAATTTGCCGTGGTTGGAGGACGAGGA
AGTGGTTGCACAGCAGGACGGAGCGACCTCCCCACACGGTGAAAGGCAGG
CCGGGGGAACTCAACGATTTGTCTTTATTCCCAGCATTGAAGGAAAATTT
GCCGTGGTTGGAGGACGAGGAAGTGGTTGCACAGCAGGACGGAGCGACCT
CCCCACACGGTGAAAGGCAGGCCGGGGGAACTCAACGATTTGGTTACAAT
TTAGGGAGGGATCACGACGGCGTTCTGGTCGCGAAGTGTCAAGTGTTATC
GCTACGATGAGTTACAATTTAGGGAGGGATCACGACGGCGTTCTGGTCGC
GAAGTGTCAAGTGTTATCGCTACGATGA
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