mRNA_H-paniculata_contig82636.16284.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig82636.16284.1
Unique NamemRNA_H-paniculata_contig82636.16284.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig82636.16284.1 vs. uniprot
Match: A0A6H5JLP8_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP8_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.330e-17
Identity = 33/74 (44.59%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:    1 DWSKGTLTMDQTVFVDNLMEQFEITSVSELPVTLLDDLRPRRDDEEGGDWPFGSAVECLFWLATMTRPDIANAV 222
            D   GTL + QT ++D+++E+F++ S S +P T   DL P+R+DEEGG+WP G A+  + W++T +RPD++ AV
Sbjct:  555 DVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPMGEAIGSMMWVSTFSRPDVSFAV 628
[Close]
BLAST of mRNA_H-paniculata_contig82636.16284.1 vs. uniprot
Match: A0A6H5KBH1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH1_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.880e-17
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 DWSKGTLTMDQTVFVDNLMEQFEITSVSELPVTLLDDLRPRRDDEEGGDWPFGSAVECLFWLATMTRPDIANAV 222
            D   GTL + QT ++D+++E+F++ S S +P T   DL P+R+DEEGG+WP   A+  + W++T +RPD++ AV
Sbjct:   56 DADAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 129
[Close]
BLAST of mRNA_H-paniculata_contig82636.16284.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.150e-17
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 DWSKGTLTMDQTVFVDNLMEQFEITSVSELPVTLLDDLRPRRDDEEGGDWPFGSAVECLFWLATMTRPDIANAV 222
            D   GTL + QT ++D+++E+F++ S S +P T   DL P+R+DEEGG+WP   A+  + W++T +RPD++ AV
Sbjct:  120 DVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 193
[Close]
BLAST of mRNA_H-paniculata_contig82636.16284.1 vs. uniprot
Match: A0A6H5KPT0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT0_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 4.600e-17
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 DWSKGTLTMDQTVFVDNLMEQFEITSVSELPVTLLDDLRPRRDDEEGGDWPFGSAVECLFWLATMTRPDIANAV 222
            D   GTL + QT ++D+++E+F++ S S +P T   DL P+R+DEEGG+WP   A+  + W++T +RPD++ AV
Sbjct:   56 DVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 129
[Close]
BLAST of mRNA_H-paniculata_contig82636.16284.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.080e-16
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 DWSKGTLTMDQTVFVDNLMEQFEITSVSELPVTLLDDLRPRRDDEEGGDWPFGSAVECLFWLATMTRPDIANAV 222
            D   GTL + QT ++D+++E+F++ S S +P T   DL P+R+DEEGG+WP   A+  + W++T +RPD++ AV
Sbjct:  263 DVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 336
[Close]
BLAST of mRNA_H-paniculata_contig82636.16284.1 vs. uniprot
Match: A0A6H5K1T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1T2_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.200e-16
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 DWSKGTLTMDQTVFVDNLMEQFEITSVSELPVTLLDDLRPRRDDEEGGDWPFGSAVECLFWLATMTRPDIANAV 222
            D   GTL + QT ++D+++E+F++ S S +P T   DL P+R+DEEGG+WP   A+  + W++T +RPD++ AV
Sbjct:  516 DVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 589
[Close]
BLAST of mRNA_H-paniculata_contig82636.16284.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.200e-16
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 DWSKGTLTMDQTVFVDNLMEQFEITSVSELPVTLLDDLRPRRDDEEGGDWPFGSAVECLFWLATMTRPDIANAV 222
            D   GTL + QT ++D+++E+F++ S S +P T   DL P+R+DEEGG+WP   A+  + W++T +RPD++ AV
Sbjct:  611 DVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 684
[Close]
BLAST of mRNA_H-paniculata_contig82636.16284.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.230e-16
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 DWSKGTLTMDQTVFVDNLMEQFEITSVSELPVTLLDDLRPRRDDEEGGDWPFGSAVECLFWLATMTRPDIANAV 222
            D   GTL + QT ++D+++E+F++ S S +P T   DL P+R+DEEGG+WP   A+  + W++T +RPD++ AV
Sbjct:  976 DVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 1049
[Close]
BLAST of mRNA_H-paniculata_contig82636.16284.1 vs. uniprot
Match: A0A6H5JRE9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE9_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.230e-16
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 DWSKGTLTMDQTVFVDNLMEQFEITSVSELPVTLLDDLRPRRDDEEGGDWPFGSAVECLFWLATMTRPDIANAV 222
            D   GTL + QT ++D+++E+F++ S S +P T   DL P+R+DEEGG+WP   A+  + W++T +RPD++ AV
Sbjct:  913 DVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 986
[Close]
BLAST of mRNA_H-paniculata_contig82636.16284.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.240e-16
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 DWSKGTLTMDQTVFVDNLMEQFEITSVSELPVTLLDDLRPRRDDEEGGDWPFGSAVECLFWLATMTRPDIANAV 222
            D   GTL + QT ++D+++E+F++ S S +P T   DL P+R+DEEGG+WP   A+  + W++T +RPD++ AV
Sbjct: 1355 DVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAV 1428
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig82636.16284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLP8_9PHAE1.330e-1744.59Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KBH1_9PHAE1.880e-1743.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRS6_9PHAE2.150e-1743.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPT0_9PHAE4.600e-1743.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTL3_9PHAE2.080e-1643.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1T2_9PHAE2.200e-1643.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K164_9PHAE2.200e-1643.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG8_9PHAE2.230e-1643.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRE9_9PHAE2.230e-1643.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE2.240e-1643.24Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig82636contigH-paniculata_contig82636:136..360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size201
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931037.6089227-CDS-H-paniculata_contig82636:135..3361622931037.6089227-CDS-H-paniculata_contig82636:135..336Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82636 136..336 -
1691481561.1563885-CDS-H-paniculata_contig82636:135..3361691481561.1563885-CDS-H-paniculata_contig82636:135..336Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82636 136..336 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931037.624858-UTR-H-paniculata_contig82636:336..3601622931037.624858-UTR-H-paniculata_contig82636:336..360Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig82636 337..360 -
1691481561.1653008-UTR-H-paniculata_contig82636:336..3601691481561.1653008-UTR-H-paniculata_contig82636:336..360Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig82636 337..360 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig82636.16284.1prot_H-paniculata_contig82636.16284.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig82636 136..336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig82636.16284.1

>prot_H-paniculata_contig82636.16284.1 ID=prot_H-paniculata_contig82636.16284.1|Name=mRNA_H-paniculata_contig82636.16284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MDQTVFVDNLMEQFEITSVSELPVTLLDDLRPRRDDEEGGDWPFGSAVEC
LFWLATMTRPDIANAV*
back to top

mRNA from alignment at H-paniculata_contig82636:136..360-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig82636.16284.1 ID=mRNA_H-paniculata_contig82636.16284.1|Name=mRNA_H-paniculata_contig82636.16284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=225bp|location=Sequence derived from alignment at H-paniculata_contig82636:136..360- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTGGAGTAAAGGTACCTTGACGATGGACCAAACTGTTTTTGTTGACAA
CCTCATGGAGCAGTTCGAAATTACCTCTGTATCTGAACTCCCTGTGACAT
TGCTTGATGACCTACGTCCGCGGCGTGATGATGAGGAAGGTGGAGACTGG
CCGTTCGGGTCGGCAGTTGAGTGCCTTTTCTGGCTAGCCACGATGACCCG
GCCGGACATAGCGAATGCTGTATGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig82636:136..360-

>mRNA_H-paniculata_contig82636.16284.1 ID=mRNA_H-paniculata_contig82636.16284.1|Name=mRNA_H-paniculata_contig82636.16284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig82636:136..360- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACCAAACTGTTTTTGTTGACAACCTCATGGAGCAGTTCGAAATTAC
CTCTGTATCTGAACTCCCTGTGACATTGCTTGATGACCTACGTCCGCGGC
GTGATGATGAGGAAGGTGGAGACTGGCCGTTCGGGTCGGCAGTTGAGTGC
CTTTTCTGGCTAGCCACGATGACCCGGCCGGACATAGCGAATGCTGTATG
AATGGACCAAACTGTTTTTGTTGACAACCTCATGGAGCAGTTCGAAATTA
CCTCTGTATCTGAACTCCCTGTGACATTGCTTGATGACCTACGTCCGCGG
CGTGATGATGAGGAAGGTGGAGACTGGCCGTTCGGGTCGGCAGTTGAGTG
CCTTTTCTGGCTAGCCACGATGACCCGGCCGGACATAGCGAATGCTGTAT
GA
back to top