mRNA_H-paniculata_contig8256.16276.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8256.16276.1
Unique NamemRNA_H-paniculata_contig8256.16276.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8256.16276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8256contigH-paniculata_contig8256:4597..8544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size721
Cds size633
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8256.16276.1prot_H-paniculata_contig8256.16276.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8256 4597..8458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931036.4503148-CDS-H-paniculata_contig8256:4596..48791622931036.4503148-CDS-H-paniculata_contig8256:4596..4879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8256 4597..4879 -
1691481560.7098227-CDS-H-paniculata_contig8256:4596..48791691481560.7098227-CDS-H-paniculata_contig8256:4596..4879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8256 4597..4879 -
1622931036.4680984-CDS-H-paniculata_contig8256:5433..57311622931036.4680984-CDS-H-paniculata_contig8256:5433..5731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8256 5434..5731 -
1691481560.7227125-CDS-H-paniculata_contig8256:5433..57311691481560.7227125-CDS-H-paniculata_contig8256:5433..5731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8256 5434..5731 -
1622931036.4992135-CDS-H-paniculata_contig8256:8406..84581622931036.4992135-CDS-H-paniculata_contig8256:8406..8458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8256 8407..8458 -
1691481560.7321358-CDS-H-paniculata_contig8256:8406..84581691481560.7321358-CDS-H-paniculata_contig8256:8406..8458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8256 8407..8458 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931036.5147297-UTR-H-paniculata_contig8256:8458..85441622931036.5147297-UTR-H-paniculata_contig8256:8458..8544Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8256 8459..8544 -
1691481560.7409668-UTR-H-paniculata_contig8256:8458..85441691481560.7409668-UTR-H-paniculata_contig8256:8458..8544Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8256 8459..8544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8256.16276.1

>prot_H-paniculata_contig8256.16276.1 ID=prot_H-paniculata_contig8256.16276.1|Name=mRNA_H-paniculata_contig8256.16276.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=211bp
MQAGTALRTRLNLVANNGVHAARSGIGGASGKATRARGTAANATPPRLSN
IGGGQRNHDHRHHLRGMFSRCTPTRPPPPVGAQRRGLVGSSASVRSSSNT
LLPLVSSRPPKPRIYSRCQSGANGRRPSVPLCSQHQHQQHCRSRSLCTSK
NTPPPPPRPQPSTTSASSKPEVGGNKPPPFNPVKRGDGVGDGRVPPLSGV
EVARGGTGGAV
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mRNA from alignment at H-paniculata_contig8256:4597..8544-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8256.16276.1 ID=mRNA_H-paniculata_contig8256.16276.1|Name=mRNA_H-paniculata_contig8256.16276.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3948bp|location=Sequence derived from alignment at H-paniculata_contig8256:4597..8544- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTTGAGTCCTCGTGCTCCTGTGCTAGCCTGTCTAGAACAGAATAGAGG
ATACTAGCTCGGATTGCAGTAAGGAATGCGGAGACAATGCAGGCTGGGAC
TGCTCTACGCACGAGGTTGAATCTGGTGGCGAACAACGGTGAGCAACGTA
GTAGATGCGTTTTTTGCGGTCTGGTGGAACCAACTACATTTTATTGACAT
ACAGACAGTTACTCATTGCTGCCTCAGCTTACACACTGGCATGTATTGTG
ATGACAGTAATTGTGTGTATCAGCAGAACAAGAGGACAGTGTAGTGCATG
TGGGGCAGTGTTTTGCATGTATGTATGTGTGCATGTGCGATGGGCAATAC
CTCTTCGTACAAGAGATCTCAGATAGATCACTGCTGTGATGTGCAGTGGT
TGTGAAAGTTGGGCAGTTATGTATTACTGACTATTGGAGACGTTTACGGA
CAGTATGATGCGCCCATTCTAACACAATTATATAACAGACATTTCGGAGC
CTTGTTTTGCAGAACGAAGGCATCAAACAAGAGAATTGGTTTCTTGAGTT
CGAATAATCCTCACTTCAACGAGGGTACATAAAGTTGAACGCTCCTTGGG
AATGAAAAGCTACTTCACTTCCCGCTCGGATCCAAGCCCTGATACTTTTT
CGGACGTACAGCTGCTACCTGTAACGAATTACAGTCTGTACTGCTATCTA
AGATATCTGCACTTGAGCACCTAGCCTGACTAACAGGTGCATTTATATTT
GAATGGCCGGCTAAAAACAAGAGGACAAGTTCGAAATTAGCTCGCTACTC
TGTACGGGCCAAACGTTTTATCTTTTGCGAAGGTTTTTTAGGATTTGTAT
AATATACGCAGGGAAAAATCCACGCCTCACTCAAGGGCGGTCGATCCAAC
AGACATTATAGTAGTAGGAACAGGCCATATTATGTTCAGGGGAGAAAGAA
AGACCATCTCATTGTTTTGTTCGTTTGAAGGCTGAATAGTGGACCAAAGA
AGTCAATTAACTTAAAAGTGCCTAGAAAAGCGCCGCTCGCTGTTCGCGAT
GTGCTTGAACGTGAGTAAAGGACCAGTAAAGCATGATCGGTGACGATGCT
TTCTGTGTAATTACCTCTGCCTGATTGTTGACTATCAGCCACGAGGGCGC
TTTAAAACAGGAGGTGCGACTACTGGGTGTACCCGCTCCTTTTTTTTGCC
GTTTTTTGTCGTCTTTTTGCCCACCTAAATAGCTTTTGGGTTCATGAAAA
AACATTTTTTTTTTACGCGGTAGTACAGTTACCTAGCAAAACTGGATAAG
CCGGTTGCCGATGGGAAAACCTTCAAACAACTCCCCGCCGAACCAAATTT
CGTCCATCCGAAGTCGGTACCCCCCCCCCCCCTCAAAATGCACCCCCCCC
CGCCATTTGGGGATACGGGACTAAGATCTTACTCGTCATACTCTAGACCC
CCAGGAGTCAAAGGGTTAAGTACCCACTCCTAGTATATACAAGACCTATA
TACAATCATTAAAATCTACCGGGTATTTTCCCGCGCGTTATACATGCACT
GCACACGGTAAGTACACTAAAAGCTATCCGTTACGGTCACGGTACCATTT
ATTTCTAAACTATTTGATAGCACGTGTTTTTGTTTCGCAGCCGGTGCACT
TCTCTGGAAGTTATGTAACCCTTTGGGCGCCTGGTCGCAATGAATCTACG
CAATATTCAGGATTTTTGCAGTACGTAAAAATAAATGGCGTGTCATTTTC
CGCACACCCGCAACGCCTCCCCCCGCTTATGAATAAAGGTCAGGCTATGG
AAAGGCATGGTCGTACTCATGGGTAAATAACTTTTTTCGATCATACTCCT
GAGCAGCTGGCTCCAGGCGCTGGACCGCCGTGCATGGAGCGGTGATCGCA
GCTATGGCAAGAATACATGAATGCACCCAGGAAGATGCTCTCCGTAGGCT
CCGCCGTACTGTAGTCAAAGTCGCTCGCTTTCCCTGTTTTTTTTTTGTTT
TTTTTTAACCCCCGGGAGGAAGGCTTCCATACCGAAGTATGTCTACATTT
CCTTGTAACAGAACAGAGTTATTTGTTCCTCTGCGGGCTAGGCGCCACCG
CGGTTTGGCCGAACCAAGTAGGCAGTGTGGGGGTTGCACCCACTAAAAGA
CCTCTGACTAGACTCCAGTCATGCTCAGTTCATGAGCTACCCTACCCGTT
CGGGCGTAGGTCCGTGGGCTTTTCCTGGATTTCCGTGTTGCGACCTACGA
GTAAGGAAAGAGTTATTGCCCCGCTGCTCCAGTTTATGCAAATTCAGCTT
GTAACGTCTTGGCCCGTACTTGGGGTTGAACAACAAGTTGTTGGGCTATT
GCATGGGACGGGTCCCAGCCCGTACGTACGCTTTATCGTTATGCTGTCAT
TATTTGCAGTGTTGAAGTTATCCAATGACGGGGCTAAAGAGAAAATTGTA
ACCTCTTTTTTGTCACCTTTTTTGTTTTGTGTCTGCAGGCCACAATATCG
AAGATCGTCACCTCTATACATACATACATATGCGCGCTCGCACCGCTGTT
GATGTATTAATAATTTTGCTGATAATTGTCATTGCCCAACCACAAAGTTT
CAACTCGCCTGCATAAACCTTAACATGAGTATAATGGAGTCATTGTATGA
GCTTAAGAGTTATGGTTTAACTAACTTTGGCAGGGTTTTACTTGCGAATA
AGAATTCCAAGTGCCCCCTCCTTCCCCTGGTTGATCTGATTTTGCTCATA
AGTATACACAAGTAAAGATTTAATTAAGTCAGCTGCCCTCCACCCCACCC
CCACCCTCCACAGGTGTTCACGCCGCAAGAAGTGGCATTGGTGGTGCTAG
TGGGAAAGCAACACGGGCAAGGGGAACTGCCGCCAACGCCACCCCCCCCC
GTCTATCAAATATTGGGGGAGGGCAGCGGAATCATGATCATCGTCACCAC
CTTCGCGGGATGTTTTCGAGATGCACGCCGACACGTCCACCCCCGCCTGT
CGGCGCCCAGCGAAGAGGCTTGGTGGGCAGCTCAGCGAGTGTTCGATCGA
GCAGCAACACGCTGTTGCCGCTGGTTTCGAGCCGTCCGCCGAAACCTCGA
ATTTATTCCAGGTAATTTTCGGTGCTTCTGGACCCAAACTTGTAGTAAGA
GGGCGCTCGTATTGTTTTTATTTAATTAATAGGGTATATAGTACTCGTGC
CGGGTATATCGCTCCTTCCCCCCCGGAATACTACTCCTAGTGACGGAAAA
AATTGCGCAGTTTTTAATTTATATTTTCCCTCTTTGTTAGTATTACTTGT
AGGTCGGGGCATCGCTTCGACAGTGTCAAAGCGTTTCGTTTTGAAAAGTG
TCATTCGATTTGAAAATGGTCATTCTTTTTAGATGAACGACATCGTCTTG
GTCGTCATCATCGTGTTTATCCTTTTCGCTTTATCAGGGAGTGTTGGCAC
AGAGGATAAGCCCCTCCCTCGATTAATATATTCCATGTCGTTCTTTTGCT
GATAAATGTACACAGCTGCAAGGAGCTAAGGTAAGCTTCATAACCTCAAC
ATGGGTACGATGGAGTTATATTTTATTAATACCCCCACACATCCTTCCCT
CCCCTCCCCTCCCCACCCCCGGCGTCCGCCTTCTACTCGAAACGACTCGA
CCGTGTGGCGTACAGATGTCAGAGCGGAGCAAACGGACGACGACCGTCTG
TACCTCTCTGCTCCCAGCATCAGCACCAGCAGCATTGTAGATCGCGATCT
CTTTGCACGTCCAAGAACACCCCACCTCCGCCCCCACGCCCCCAGCCGTC
CACCACCTCCGCGTCGTCCAAACCCGAAGTCGGGGGCAATAAACCACCCC
CTTTTAACCCGGTCAAACGCGGGGATGGGGTTGGGGATGGACGTGTACCC
CCGCTGTCAGGCGTAGAGGTGGCGCGTGGTGGTACCGGCGGGGCCGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig8256:4597..8544-

>mRNA_H-paniculata_contig8256.16276.1 ID=mRNA_H-paniculata_contig8256.16276.1|Name=mRNA_H-paniculata_contig8256.16276.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1266bp|location=Sequence derived from alignment at H-paniculata_contig8256:4597..8544- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGCTGGGACTGCTCTACGCACGAGGTTGAATCTGGTGGCGAACAA
CGATGCAGGCTGGGACTGCTCTACGCACGAGGTTGAATCTGGTGGCGAAC
AACGGTGTTCACGCCGCAAGAAGTGGCATTGGTGGTGCTAGTGGGAAAGC
AACACGGGCAAGGGGAACTGCCGCCAACGCCACCCCCCCCCGTCTATCAA
ATATTGGGGGAGGGCAGCGGAATCATGATCATCGTCACCACCTTCGCGGG
ATGTTTTCGAGATGCACGCCGACACGTCCACCCCCGCCTGTCGGCGCCCA
GCGAAGAGGCTTGGTGGGCAGCTCAGCGAGTGTTCGATCGAGCAGCAACA
CGCTGTTGCCGCTGGTTTCGAGCCGTCCGCCGAAACCTCGAATTTATTCC
AGGTGTTCACGCCGCAAGAAGTGGCATTGGTGGTGCTAGTGGGAAAGCAA
CACGGGCAAGGGGAACTGCCGCCAACGCCACCCCCCCCCGTCTATCAAAT
ATTGGGGGAGGGCAGCGGAATCATGATCATCGTCACCACCTTCGCGGGAT
GTTTTCGAGATGCACGCCGACACGTCCACCCCCGCCTGTCGGCGCCCAGC
GAAGAGGCTTGGTGGGCAGCTCAGCGAGTGTTCGATCGAGCAGCAACACG
CTGTTGCCGCTGGTTTCGAGCCGTCCGCCGAAACCTCGAATTTATTCCAG
ATGTCAGAGCGGAGCAAACGGACGACGACCGTCTGTACCTCTCTGCTCCC
AGCATCAGCACCAGCAGCATTGTAGATCGCGATCTCTTTGCACGTCCAAG
AACACCCCACCTCCGCCCCCACGCCCCCAGCCGTCCACCACCTCCGCGTC
GTCCAAACCCGAAGTCGGGGGCAATAAACCACCCCCTTTTAACCCGGTCA
AACGCGGGGATGGGGTTGGGGATGGACGTGTACCCCCGCTGTCAGGCGTA
GAGGTGGCGCGTGGTGGTACCGGCGGGGCCGTGATGTCAGAGCGGAGCAA
ACGGACGACGACCGTCTGTACCTCTCTGCTCCCAGCATCAGCACCAGCAG
CATTGTAGATCGCGATCTCTTTGCACGTCCAAGAACACCCCACCTCCGCC
CCCACGCCCCCAGCCGTCCACCACCTCCGCGTCGTCCAAACCCGAAGTCG
GGGGCAATAAACCACCCCCTTTTAACCCGGTCAAACGCGGGGATGGGGTT
GGGGATGGACGTGTACCCCCGCTGTCAGGCGTAGAGGTGGCGCGTGGTGG
TACCGGCGGGGCCGTG
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