mRNA_H-paniculata_contig8255.16274.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8255.16274.1
Unique NamemRNA_H-paniculata_contig8255.16274.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8255.16274.1 vs. uniprot
Match: D8LBF3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBF3_ECTSI)

HSP 1 Score: 506 bits (1302), Expect = 2.720e-177
Identity = 288/366 (78.69%), Postives = 320/366 (87.43%), Query Frame = 1
Query:    1 DADMFMEDFGDALNEDGDSWQAKVGRGATETLDASLQAPNANDFSNARLIEELENRNSRVSGFRDQDVLTLQKILDEEFEVEKESLIKQQREKREQAAKQAGLHRKRMMLERQLREEISEIEKNHRIEFWLTLVKQNSTPSAARIKANSITARALAKAMWTNTSLTSLDLSCNGIDDVAGTYIARLLKRNTALVNIALGSNQLGVSVCHSFGESLRSNITLKALSLESNALTSGGVDSSGIHALAEMFSRNNTLTSINLWRCALGADAGAALSRGMESNCTITFLEIGHNGIAMIDQHKIKAALDSNFKRFEERQAIRRHEQSVTDKVLAEERALQEQLRAXXXXXXXXXXXXXLRAEERRNLEEK 1098
            D D FMED+GD+LN+ GD ++ K  R A E LDASLQAPNANDFSNARLIEELENRNSRVSGFRDQDV+TLQKILD EFE+EKES+IK QREKREQAAKQAGL RKRMMLERQLREEISEI K+ RIEFWL LVKQN+TP  ARI  NS+TARALAK+MWTNTSLTSLDLS NGIDD AGTY+ARLLKRNTALVN+ALGSNQLGV  C +FGESL SN TLK LSLESN+LTS G + SGI AL +MFS+N+TLTS+NLWRCALGA+AG ALSRGMESN TITFLE+G NG+AM DQHK+K AL++NFKRFEE QA+RR E S+ DK+LAEE+A+QEQLRAXXXXXXXXXXXXX  AEERR  EEK
Sbjct:    3 DNDAFMEDYGDSLNDAGDPYETKTTRNAAEALDASLQAPNANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDAEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEIGKDQRIEFWLNLVKQNATPPTARIDVNSVTARALAKSMWTNTSLTSLDLSRNGIDDAAGTYVARLLKRNTALVNVALGSNQLGVFACRAFGESLCSNSTLKCLSLESNSLTSDGANMSGIQALTDMFSKNSTLTSVNLWRCALGAEAGVALSRGMESNHTITFLEVGLNGLAMADQHKVKTALENNFKRFEECQAVRRQELSIADKILAEEKAMQEQLRAXXXXXXXXXXXXXXXAEERRKAEEK 368          
BLAST of mRNA_H-paniculata_contig8255.16274.1 vs. uniprot
Match: A0A835YIK2_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIK2_9STRA)

HSP 1 Score: 247 bits (631), Expect = 1.690e-75
Identity = 156/339 (46.02%), Postives = 198/339 (58.41%), Query Frame = 1
Query:   88 ETLDAS-LQAPNANDFSNARLIEELENRNSRVSGFRDQDVLTLQKILDEEFEVEKESLIKQQREKREQAAKQAGLHRKRMMLERQLREEISEIEKNHRIEFWLTLVKQNSTPSAARIKANSITARALAKAMWTNTSLTSLDLSCNGIDDVAGTYIARLLKRNTALVNIALGSNQLGVSVCHSFGESLRSNITLKALSLESNALTSGGVDSSGIHALAEMFSRNNTLTSINLWRCALGADAGAALSRGMESNCTITFLEIGHNGIAMIDQHKIKAALDSNFKRFEERQAIRRHEQSVTDKVLAEERALQEQLRAXXXXXXXXXXXXXLRAEERRNLEEKR 1101
            ET D S LQAPNANDFSNARLIEELE R  R +GFRDQD++ LQK+LD EFE EKE LI+Q  EK+EQA K+AGL R+R  LE+QL EE  E+ +N  +  WL+LVKQ+ TP  ARI+ NSI+ARALAKAMWTNTSLTSLDL+ N +DD AG Y                                                LT+ G   +G   + +  S+N  LTS+NLWRC LG  AG  L+ G+++N TITFLE+G+N +A+ D  +I A +  N   ++  Q     +Q   D++L EE+  Q+ LR              LRAEERR  EE+R
Sbjct:   39 ETFDTSQLQAPNANDFSNARLIEELEGRRMRPTGFRDQDIIALQKVLDAEFEQEKEHLIRQHNEKKEQAMKEAGLQRRRAQLEKQLTEEKQEVAQNKIVAGWLSLVKQDETPLTARIEVNSISARALAKAMWTNTSLTSLDLARNNLDDFAGAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLTNEGEKPAGFRYMVQALSKNAALTSLNLWRCGLGTPAGHDLAAGIQANRTITFLELGNNSLALSDLRQIGARVKDNRCHYDALQQQAMAKQREQDRILQEEKKAQDLLRKERELHDWLEAQRLLRAEERRAEEEER 377          
BLAST of mRNA_H-paniculata_contig8255.16274.1 vs. uniprot
Match: A0A6H5JI07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI07_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 1.390e-59
Identity = 109/134 (81.34%), Postives = 118/134 (88.06%), Query Frame = 1
Query:    1 DADMFMEDFGDALNEDGDSWQAKVGRGATETLDASLQAPNANDFSNARLIEELENRNSRVSGFRDQDVLTLQKILDEEFEVEKESLIKQQREKREQAAKQAGLHRKRMMLERQLREEISEIEKNHRIEFWLTLV 402
            D D FMED+GD+LN+ GD ++ K  R A E LDASLQAPNANDFSNARLIEELENRNSRVSGFRDQDV+TLQKILD EFE+EKES+IK QREKREQAAKQAGL RKRMMLERQLREEISEI K+ RIEFWL LV
Sbjct:    3 DNDAFMEDYGDSLNDAGDPYEPKTTRNAAEALDASLQAPNANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDAEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEIGKDQRIEFWLHLV 136          
BLAST of mRNA_H-paniculata_contig8255.16274.1 vs. uniprot
Match: A0A7R9VZE3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VZE3_9STRA)

HSP 1 Score: 189 bits (481), Expect = 7.570e-54
Identity = 107/251 (42.63%), Postives = 162/251 (64.54%), Query Frame = 1
Query:  121 ANDFSNARLIEELENRNSRVSGFRDQDVLTLQKILDEEFEVEKESLIKQQREKREQAAKQAGLHRKRMMLERQLREEISEIEKNHRIEFWLTLVKQNSTPSAARIKANSITARALAKAMWTNTSLTSLDLSCNGIDDVAGTYIARLLKRNTALVNIALGSNQLGVSVCHSFGESLRSNITLKALSLESNALTSGGVDSSGIHALAEMFSRNNTLTSINLWRCALGADAGAALSRGMESNCTITFLEIGHNG 873
            AN  +   L++ELE R  +  GF   D   LQ+  DEE E+  E+  +++RE RE  AK+A   R+R+++E ++REE  EI ++ R++ WL L ++   P  +RI+ N+I+AR+LAKA+ T++S+  LD+S  G+ D+AG Y+ R L+ N  L+ I LGSN+ G   C S G++L SN  ++ +SLESN LT    D SGI A+AEM S+N  L  ++LWRC  GAD+G A++  M  N  +T +E+G+NG
Sbjct:   50 ANALTLNELVQELEKRGLQARGFFADDAKVLQEKFDEEHELYVEAKRREKREAREADAKRAAEQRRRLLMETEVREEREEIGRDRRMKSWLLLTEEGMAPPHSRIEVNNISARSLAKALLTDSSILCLDVSNLGLSDLAGAYLCRALRSNRTLIKIELGSNKFGPKTCKSLGDALTSNNVVRFVSLESNPLTGEKNDISGIIAIAEMLSKNKALRYLSLWRCGTGADSGKAIADAMAFNDALTCIEVGYNG 300          
BLAST of mRNA_H-paniculata_contig8255.16274.1 vs. uniprot
Match: F0Y577_AURAN (F-box domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y577_AURAN)

HSP 1 Score: 164 bits (416), Expect = 2.710e-41
Identity = 112/305 (36.72%), Postives = 166/305 (54.43%), Query Frame = 1
Query:   22 DFGDALNE--DGDSWQAKVGRGATETLD-ASLQAPNANDFSNARLIEELENRNSRVSGFRDQDVLTLQKILDEEFEVEKESLIKQQREKREQAAKQAGLHRKRMMLERQLREEISEIEKNHRIEFWLTLVKQNSTPSAARIKANSITARALAKAMWTNTSLTSLDLSCNGIDDVAGTYIARLLKRNTALVNIALGSNQLGVSVCHSFGESLRSNITLKALSLESNALTSGGVDSSGIHALAEMFSRNNTLTSINLWRCALGADAGAALSRGMESNCTITFLEIGHNGIAMIDQHKIKAALDSNFK 927
            D GD L +  DGD    + GR   +++D A L+  +A       L+ E+E R+    GF + D   LQK  D+E   E E + +++RE+R+++  +A L +KR+ LE+QLREE   +  + +IE WL++V+ + T  +ARI  NS+TARALAKAMW N SLTSLDLS N + D AG  I R+LKR                                          T+   D +G+ ALA+  S N +LT +NLWRC LG  AGA L++ +  N +I  L++G+NG+ + D+ +I   +D+N K
Sbjct:   12 DAGDVLEDADDGD----ENGREREDSIDLADLKPMDAFLMKMEDLVTEMERRHLHPKGFFNDDAKELQKYFDQEHFKELEKIKEERREQRQRSXMKAQLQKKRLQLEKQLREEQDAVANDPQIEAWLSVVRSDQTRPSARIGVNSVTARALAKAMWNNKSLTSLDLSRNDLSDFAGAQIGRMLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNESTDQTGVVALAQALSSNASLTLLNLWRCDLGTTAGAELAKALHLNSSIINLDVGNNGVLVADKRRIADKVDANKK 312          
BLAST of mRNA_H-paniculata_contig8255.16274.1 vs. uniprot
Match: A0A7S3ZT07_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZT07_9STRA)

HSP 1 Score: 158 bits (400), Expect = 3.800e-41
Identity = 106/307 (34.53%), Postives = 160/307 (52.12%), Query Frame = 1
Query:   79 GATETLDASLQAP-NANDFSNARLIEELENRNSRVSGFRDQDVLTLQKILDEEFEVEKESLIKQQREKREQAAKQAGLHRKRMMLERQLREEISEIEKNHRIEFWLTLVKQNSTPSAARIKANSITARALAKAMWTNTSLTSLDLSCNGIDDVAGTYIARLLKRNTALVNIALGSNQLGVSVCHSFGESLRSNITLKALSLESNALTSGGVDSSGIHALAEMFSRNNTLTSINLWRCALGADAGAALSRGMESNCTITFLEIGHNGIAMIDQHKIKAALDSNFKRFEERQAIRRHEQSVTDKVLAEE 996
            G  + LD S   P +A +     L+ E E R     GF + D   LQK+LD+EF    E L  ++R   ++   +A L +KR+ LE+QLREE   I  +   + WL  +K N T  A RI+ +SI  RALAKA+W+++S+T LDLS NG+ D AG  + R+LKRN                                  ++E+N LT+   D +G+ ALA+    N TLT +N+WRC LG  AGAA++  + +N T+   ++GH GI  +D  +I   +  N +   E +A  + E++  D++  EE
Sbjct:   28 GGDDDLDFSDMKPMDAFEMKMEDLVVEFERRGMHPKGFFNDDARELQKVLDKEFSENLEKLKAEKRAALQRNRMKAKLQKKRLQLEKQLREEQDAIHDSLDAKAWLNTIKNNQTRDACRIECDSIVCRALAKALWSSSSITCLDLSRNGLSDFAGAQLGRMLKRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMETNPLTNESTDQTGVVALAKALGSNTTLTRLNMWRCDLGTAAGAAIADALVANETLIDFDVGHGGILELDAQRIADRIAHNKR---ETKAKNKREKAYRDQLAREE 331          
BLAST of mRNA_H-paniculata_contig8255.16274.1 vs. uniprot
Match: A0A7S3XPA2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPA2_HETAK)

HSP 1 Score: 144 bits (362), Expect = 1.520e-35
Identity = 97/283 (34.28%), Postives = 141/283 (49.82%), Query Frame = 1
Query:   79 GATETLDASLQAP-NANDFSNARLIEELENRNSRVSGFRDQDVLTLQKILDEEFEVEKESLIKQQREKREQAAKQAGLHRKRMMLERQLREEISEIEKNHRIEFWLTLVKQNSTPSAARIKANSITARALAKAMWTNTSLTSLDLSCNGIDDVAGTYIARLLKRNTALVNIALGSNQLGVSVCHSFGESLRSNITLKALSLESNALTSGGV-DSSGIHALAEMFSRNNTLTSINLWRCALGADAGAALSRGMESNCTITFLEIGHNGIAMIDQHKIKAALDSN 921
            G T+ +D     P +A   +N  L  ELE R  +  GF   D   LQK  D E E      +K++ E++E+ A QAGL R++ ++E+QL+EE+  I+++ R E WL LV+ ++TP  AR++  S+ AR LAKA+W N SL SLDLS NG+DD AG +                                                LT  G+ + +G    A+M   NNTLTS+NL+RC LG +AG  L  G+E N ++ FL++G N        +I   +  N
Sbjct:   36 GTTDLMDLQDSQPRDALRLTNDELNAELEMRGEKPKGFFTDDAKVLQKYFDVEHEEYLAKQMKERAEQQEKLAAQAGLIRRKRLVEKQLKEELLAIQRDRRAEHWLALVRGDATPPQARVELGSVAARCLAKALWGNGSLVSLDLSRNGLDDKAGAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLTESGLAEKTGAPEFADMLKHNNTLTSLNLFRCHLGPEAGTELLGGLEQNASLVFLDVGGNHFLQSHDARINGKIQEN 318          
BLAST of mRNA_H-paniculata_contig8255.16274.1 vs. uniprot
Match: B8C189_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C189_THAPS)

HSP 1 Score: 133 bits (334), Expect = 4.190e-32
Identity = 87/246 (35.37%), Postives = 131/246 (53.25%), Query Frame = 1
Query:  145 LIEELENRNSRVSGFRDQDVLTLQKILDEEFEVEKESLIKQQREKREQA----AKQAGLHRKRMMLERQLREEISEIEKNHRIEFWLTLVKQNSTPSAARIKANSITARALAKAMWTNTSLTSLDLSCNGIDDVAGTYIARLLKRNTALVNIALGSNQLGVSVCHSFGESLRSNITLKALSLESNALTSGGVDSSGIHALAEMFSRNNTLTSINLWRCALGADAGAALSRGMESNCTITFLEIGHN 870
            ++ ELE +  +  GF   D   +Q+  D+E E      +K +R +   A    AKQ    RK  +LE+++ +E   I  + ++  W  L+   S P   RI  N I++RALAKA+W+N+ + SLD+S   + D+AG Y++R L+ N  LV + LG N  G     S  +SL  N TL+ LSLESN L         I   +     N  LTS++LWRC LG +AG  LS  +  N ++  +E+G+N
Sbjct:   91 ILTELERKGIQPIGFYSDDAKRVQRCFDQEHE----EYVKDKRNEALAAKVYEAKQQAERRKAALLEQEIVDEKKAISNDLQLLSWFNLLSTQSCPRHCRIDINDISSRALAKALWSNSRIQSLDVSNMHLSDLAGAYLSRSLQNNICLVKLELGGNAFGSKTLRSLADSLFVNRTLQFLSLESNPLAKDDTREC-ISLFSSALESNTRLTSLSLWRCGLGLEAGRMLSNSISKNSSLIIVEVGYN 331          
BLAST of mRNA_H-paniculata_contig8255.16274.1 vs. uniprot
Match: A0A6G0XP15_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XP15_9STRA)

HSP 1 Score: 129 bits (325), Expect = 2.450e-30
Identity = 90/264 (34.09%), Postives = 132/264 (50.00%), Query Frame = 1
Query:  145 LIEELENRNSRVSGFRDQDVLTLQKILDEEFEVEKESLIKQQREKREQAAKQAGLHRKRMMLERQLREEISEIEKNHRIEFWLTLVKQNSTPSAARIKANSITARALAKAMWTNTSLTSLDLSCNGIDDVAGTYIARLLKRNTALVNIALGSNQLGVSVCHSFGESLRSNITLKALSLESNALTSGGVDSSGIHALAEMFSRNNTLTSINLWRCALGADAGAALSRGMESNCTITFLEIGHNGIAMIDQHKIKAALDSNFKRFE 936
            L  EL +R  +  GF + D   LQ+  D E   EKES ++Q+ +   ++  +  + RKR  LE +LREE+ E+ +N ++E WL LVK N+TP  A ++ NSI  RAL+K +  N SL +L+LS N ++                                                    N LT+   D SGI A+  M ++NNTLTS+NLWR  LG D G AL++G++ N T+  L+IG+N IA+ D   I   L  N  R++
Sbjct:   55 LRRELIDRGIQPKGFFNDDATRLQEEFDREHVAEKESRMRQKIQMAAKSYLRETIKRKRQQLETELREELDELAENPKLEVWLDLVKSNTTPQEALLRVNSIATRALSKVLPFNLSLRALNLSGNQLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLTADENDFSGIAAIGAMLTKNNTLTSLNLWRTRLGIDGGKALAKGLQGNKTMLCLDIGNNKIALADAAAISTTLADNLARYD 318          
BLAST of mRNA_H-paniculata_contig8255.16274.1 vs. uniprot
Match: A0A7S1ZJ98_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZJ98_TRICV)

HSP 1 Score: 106 bits (265), Expect = 2.280e-24
Identity = 56/138 (40.58%), Postives = 92/138 (66.67%), Query Frame = 1
Query:  448 ITARALAKAMWTNTSLTSLDLSCNGIDDVAGTYIARLLKRNTALVNIALGSNQLGVSVCHSFGESLRSNITLKALSLESNALTSGGVDS-SGIHALAEMFSRNNTLTSINLWRCALGADAGAALSRGMESNCTITFLE 858
            ++ARALAKA+ T++++ SLD+S  G+ D+AG ++ R L++N +++ + LG N+LG   C S G++L +N  L+ ++LESN LT    D  SGI A+A M  +N TL  ++LWRC +G + G  ++  + SN  +T +E
Sbjct:    2 VSARALAKALLTDSAMVSLDVSHAGLSDLAGAFLCRALRKNRSMIKLELGGNRLGPKTCRSLGDALCTNDALQFVNLESNPLTGEKADDMSGIVAIAHMVRQNKTLRYLSLWRCDIGPEGGEIVADAVCSNNILTCIE 139          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8255.16274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LBF3_ECTSI2.720e-17778.69Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A835YIK2_9STRA1.690e-7546.02Leucine rich repeat protein n=1 Tax=Tribonema minu... [more]
A0A6H5JI07_9PHAE1.390e-5981.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9VZE3_9STRA7.570e-5442.63Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
F0Y577_AURAN2.710e-4136.72F-box domain-containing protein n=1 Tax=Aureococcu... [more]
A0A7S3ZT07_9STRA3.800e-4134.53Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3XPA2_HETAK1.520e-3534.28Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
B8C189_THAPS4.190e-3235.37Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A6G0XP15_9STRA2.450e-3034.09Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S1ZJ98_TRICV2.280e-2440.58Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8255contigH-paniculata_contig8255:2019..3699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score513.8
Seed ortholog evalue6.4e-143
Seed eggNOG ortholog2880.D8LBF3
KEGG koko:K17576
Hectar predicted targeting categoryother localisation
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Exons3
Model size1104
Cds size1095
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8255.16274.1prot_H-paniculata_contig8255.16274.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8255 2028..3699 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931036.1824758-UTR-H-paniculata_contig8255:2018..20271622931036.1824758-UTR-H-paniculata_contig8255:2018..2027Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8255 2019..2027 +
1691481560.541059-UTR-H-paniculata_contig8255:2018..20271691481560.541059-UTR-H-paniculata_contig8255:2018..2027Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8255 2019..2027 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931036.2017934-CDS-H-paniculata_contig8255:2027..21741622931036.2017934-CDS-H-paniculata_contig8255:2027..2174Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8255 2028..2174 +
1691481560.555492-CDS-H-paniculata_contig8255:2027..21741691481560.555492-CDS-H-paniculata_contig8255:2027..2174Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8255 2028..2174 +
1622931036.2196116-CDS-H-paniculata_contig8255:2298..25411622931036.2196116-CDS-H-paniculata_contig8255:2298..2541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8255 2299..2541 +
1691481560.5672085-CDS-H-paniculata_contig8255:2298..25411691481560.5672085-CDS-H-paniculata_contig8255:2298..2541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8255 2299..2541 +
1622931036.2332256-CDS-H-paniculata_contig8255:2994..36991622931036.2332256-CDS-H-paniculata_contig8255:2994..3699Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8255 2995..3699 +
1691481560.5819824-CDS-H-paniculata_contig8255:2994..36991691481560.5819824-CDS-H-paniculata_contig8255:2994..3699Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8255 2995..3699 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8255.16274.1

>prot_H-paniculata_contig8255.16274.1 ID=prot_H-paniculata_contig8255.16274.1|Name=mRNA_H-paniculata_contig8255.16274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=365bp
MFMEDFGDALNEDGDSWQAKVGRGATETLDASLQAPNANDFSNARLIEEL
ENRNSRVSGFRDQDVLTLQKILDEEFEVEKESLIKQQREKREQAAKQAGL
HRKRMMLERQLREEISEIEKNHRIEFWLTLVKQNSTPSAARIKANSITAR
ALAKAMWTNTSLTSLDLSCNGIDDVAGTYIARLLKRNTALVNIALGSNQL
GVSVCHSFGESLRSNITLKALSLESNALTSGGVDSSGIHALAEMFSRNNT
LTSINLWRCALGADAGAALSRGMESNCTITFLEIGHNGIAMIDQHKIKAA
LDSNFKRFEERQAIRRHEQSVTDKVLAEERALQEQLRAERELREWLEDQK
QLRAEERRNLEEKR*
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mRNA from alignment at H-paniculata_contig8255:2019..3699+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8255.16274.1 ID=mRNA_H-paniculata_contig8255.16274.1|Name=mRNA_H-paniculata_contig8255.16274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1681bp|location=Sequence derived from alignment at H-paniculata_contig8255:2019..3699+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGCCGACATGTTCATGGAAGACTTTGGTGATGCTCTCAACGAAGATGG TGACTCCTGGCAGGCAAAAGTCGGCCGCGGCGCGACCGAGACGCTGGACG CGTCATTACAAGCACCAAATGCCAATGATTTCTCCAACGCCCGACTGATC GAAGAGGTAAGATGTAAAAATGTTTCTAAACCGAACATCCCTGGGCAACG TAGTGTGCGCTGCACCATCAGAATAAACAGGCGGCTGTGCTACCAACATT TCGCATCTATACCGGTGTCCCGCTATGAAGTTGGAGAACAGGAATTCTCG AGTCAGCGGTTTTCGAGATCAAGATGTTCTGACTCTGCAGAAGATACTGG ATGAGGAGTTTGAGGTTGAGAAGGAGAGTCTCATCAAGCAACAGCGAGAG AAGAGAGAGCAAGCTGCCAAGCAAGCTGGTTTGCACAGAAAGCGGATGAT GCTTGAGAGACAACTAAGGGAAGAGATCTCAGAGATCGAGAAGAATCACA GAATCGAATTCTGGTTAACTCTGGTGAGATTTGCCATAATTCTAGTAGCG AAACTCTCGGTTTCACGCTCCTCGAGAAAACGCAAGTTATGTGGCACTCC AACAGAGACCTGGGGTTCGACAAATGGACCCACGAAATCTCCTGCACTAT ACGTGTAGAGCATCTCGATGACTTACGGCACACGAAACTGCACGCTTAGC TTGCTATCCTGCAGGAGTTGAAAAAATCGTTGTGCTATACGTTTCGCGTG GTGTTCAGCGCTATCTTCGTCACCAGTTTGACTTCTTCCGCAAAATACGG TTATCATGGGGAACATATGACTCTCACCCTTCGTTGGTAGAGTCGTTGCT CGTGTTTGCTAGAAAAACACGACTGGAATCTTGCTTCTTGTCCACGGATA GCATGTACCAGTGTGCATTGCATGGTGTCCCCTTGCTGTATGTAACTGAG CCCTGTGTACCACGATATCCTCATAGGTCAAGCAAAATTCGACGCCTTCT GCCGCTCGGATTAAAGCCAATTCTATCACAGCCCGGGCACTGGCGAAAGC GATGTGGACCAACACTTCTCTCACCAGTTTGGATTTGTCATGCAATGGCA TCGACGATGTAGCCGGGACATATATCGCACGCTTACTGAAGCGTAATACA GCCTTGGTCAACATCGCTCTCGGGTCCAATCAGTTGGGTGTCTCAGTTTG TCACTCTTTTGGCGAATCTCTCCGCTCGAATATTACGCTCAAGGCATTAA GTCTTGAGTCAAATGCGCTGACTTCTGGCGGGGTAGATTCTTCGGGGATA CACGCTCTCGCTGAAATGTTCAGCAGAAATAATACTCTTACATCAATAAA CCTTTGGAGATGCGCTCTTGGTGCGGATGCCGGAGCAGCTTTGTCGCGTG GAATGGAATCTAATTGCACCATCACCTTTCTTGAAATCGGTCACAACGGC ATAGCCATGATCGATCAACACAAGATAAAGGCCGCGCTGGATTCAAATTT CAAACGATTCGAGGAGAGGCAAGCAATTCGACGACATGAGCAGAGTGTTA CGGACAAAGTCCTAGCAGAAGAGAGAGCACTTCAAGAACAACTTCGAGCC GAGAGAGAGTTACGGGAGTGGCTCGAGGATCAAAAGCAGCTTCGTGCCGA AGAGAGACGTAATTTGGAAGAGAAGAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig8255:2019..3699+

>mRNA_H-paniculata_contig8255.16274.1 ID=mRNA_H-paniculata_contig8255.16274.1|Name=mRNA_H-paniculata_contig8255.16274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2190bp|location=Sequence derived from alignment at H-paniculata_contig8255:2019..3699+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCATGGAAGACTTTGGTGATGCTCTCAACGAAGATGGTGACTCCTG
GCAGGCAAAAGTCGGCCGCGGCGCGACCGAGACGCTGGACGCGTCATTAC
AAGCACCAAATGCCAATGATTTCTCCAACGCCCGACTGATCGAAGAGATG
TTCATGGAAGACTTTGGTGATGCTCTCAACGAAGATGGTGACTCCTGGCA
GGCAAAAGTCGGCCGCGGCGCGACCGAGACGCTGGACGCGTCATTACAAG
CACCAAATGCCAATGATTTCTCCAACGCCCGACTGATCGAAGAGTTGGAG
AACAGGAATTCTCGAGTCAGCGGTTTTCGAGATCAAGATGTTCTGACTCT
GCAGAAGATACTGGATGAGGAGTTTGAGGTTGAGAAGGAGAGTCTCATCA
AGCAACAGCGAGAGAAGAGAGAGCAAGCTGCCAAGCAAGCTGGTTTGCAC
AGAAAGCGGATGATGCTTGAGAGACAACTAAGGGAAGAGATCTCAGAGAT
CGAGAAGAATCACAGAATCGAATTCTGGTTAACTCTGTTGGAGAACAGGA
ATTCTCGAGTCAGCGGTTTTCGAGATCAAGATGTTCTGACTCTGCAGAAG
ATACTGGATGAGGAGTTTGAGGTTGAGAAGGAGAGTCTCATCAAGCAACA
GCGAGAGAAGAGAGAGCAAGCTGCCAAGCAAGCTGGTTTGCACAGAAAGC
GGATGATGCTTGAGAGACAACTAAGGGAAGAGATCTCAGAGATCGAGAAG
AATCACAGAATCGAATTCTGGTTAACTCTGGTCAAGCAAAATTCGACGCC
TTCTGCCGCTCGGATTAAAGCCAATTCTATCACAGCCCGGGCACTGGCGA
AAGCGATGTGGACCAACACTTCTCTCACCAGTTTGGATTTGTCATGCAAT
GGCATCGACGATGTAGCCGGGACATATATCGCACGCTTACTGAAGCGTAA
TACAGCCTTGGTCAACATCGCTCTCGGGTCCAATCAGTTGGGTGTCTCAG
TTTGTCACTCTTTTGGCGAATCTCTCCGCTCGAATATTACGCTCAAGGCA
TTAAGTCTTGAGTCAAATGCGCTGACTTCTGGCGGGGTAGATTCTTCGGG
GATACACGCTCTCGCTGAAATGTTCAGCAGAAATAATACTCTTACATCAA
TAAACCTTTGGAGATGCGCTCTTGGTGCGGATGCCGGAGCAGCTTTGTCG
CGTGGAATGGAATCTAATTGCACCATCACCTTTCTTGAAATCGGTCACAA
CGGCATAGCCATGATCGATCAACACAAGATAAAGGCCGCGCTGGATTCAA
ATTTCAAACGATTCGAGGAGAGGCAAGCAATTCGACGACATGAGCAGAGT
GTTACGGACAAAGTCCTAGCAGAAGAGAGAGCACTTCAAGAACAACTTCG
AGCCGAGAGAGAGTTACGGGAGTGGCTCGAGGATCAAAAGCAGCTTCGTG
CCGAAGAGAGACGTAATTTGGAAGAGAAGAGGTGAGTCAAGCAAAATTCG
ACGCCTTCTGCCGCTCGGATTAAAGCCAATTCTATCACAGCCCGGGCACT
GGCGAAAGCGATGTGGACCAACACTTCTCTCACCAGTTTGGATTTGTCAT
GCAATGGCATCGACGATGTAGCCGGGACATATATCGCACGCTTACTGAAG
CGTAATACAGCCTTGGTCAACATCGCTCTCGGGTCCAATCAGTTGGGTGT
CTCAGTTTGTCACTCTTTTGGCGAATCTCTCCGCTCGAATATTACGCTCA
AGGCATTAAGTCTTGAGTCAAATGCGCTGACTTCTGGCGGGGTAGATTCT
TCGGGGATACACGCTCTCGCTGAAATGTTCAGCAGAAATAATACTCTTAC
ATCAATAAACCTTTGGAGATGCGCTCTTGGTGCGGATGCCGGAGCAGCTT
TGTCGCGTGGAATGGAATCTAATTGCACCATCACCTTTCTTGAAATCGGT
CACAACGGCATAGCCATGATCGATCAACACAAGATAAAGGCCGCGCTGGA
TTCAAATTTCAAACGATTCGAGGAGAGGCAAGCAATTCGACGACATGAGC
AGAGTGTTACGGACAAAGTCCTAGCAGAAGAGAGAGCACTTCAAGAACAA
CTTCGAGCCGAGAGAGAGTTACGGGAGTGGCTCGAGGATCAAAAGCAGCT
TCGTGCCGAAGAGAGACGTAATTTGGAAGAGAAGAGGTGA
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