mRNA_H-paniculata_contig8251.16270.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8251.16270.1
Unique NamemRNA_H-paniculata_contig8251.16270.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8251.16270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8251contigH-paniculata_contig8251:9540..10538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size999
Cds size582
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931035.7092016-UTR-H-paniculata_contig8251:9539..99561622931035.7092016-UTR-H-paniculata_contig8251:9539..9956Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8251 9540..9956 +
1691481560.3183324-UTR-H-paniculata_contig8251:9539..99561691481560.3183324-UTR-H-paniculata_contig8251:9539..9956Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8251 9540..9956 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931035.7250621-CDS-H-paniculata_contig8251:9956..105381622931035.7250621-CDS-H-paniculata_contig8251:9956..10538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8251 9957..10538 +
1691481560.328786-CDS-H-paniculata_contig8251:9956..105381691481560.328786-CDS-H-paniculata_contig8251:9956..10538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8251 9957..10538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8251.16270.1prot_H-paniculata_contig8251.16270.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8251 9957..10538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8251.16270.1

>prot_H-paniculata_contig8251.16270.1 ID=prot_H-paniculata_contig8251.16270.1|Name=mRNA_H-paniculata_contig8251.16270.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=194bp
MVLQQCTNCYVHSTLFCFLCGRVQLCRLYHAVFALTSWLRPLEGTNVCTA
VCQVYSTSTATVKHMTWQLQQTSRGCGIVDMEKLSPLIPFTPRVPRCYSF
RSTFLISCPSIRLISWYTGMMLSPPKQTPSVPKRYSLLPLHFGTRLKDFL
CQKVSHWTFTGVEGLSAKYPQIQLCPVLPGHRILVFISFYTNWV
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mRNA from alignment at H-paniculata_contig8251:9540..10538+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8251.16270.1 ID=mRNA_H-paniculata_contig8251.16270.1|Name=mRNA_H-paniculata_contig8251.16270.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=999bp|location=Sequence derived from alignment at H-paniculata_contig8251:9540..10538+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGCTCAATCGAACTCCTAGTGCGCCACTTTGTTTAGTCACGGTCGTTA
TCCTATCCATGATTAAAAACCTTCTCATGCTTGATTTAACATCTAGGATC
GTTTCCTGCAGTCAAATCCCCCCACGTGAGTGCCATGCTACGTAATGGGT
TGACCCTTCGACTACTAGAAAAAAGAAACAAGTTGAAAGGAGGGAACAGC
GTTATCTGTCATGTCATCACTCGTGTTGTCATGCTCCGACTGCGCCGACT
GTGGCGGGCTGCCAGGTGCTGTGTCTGTGGGTACCTTCACGCATAACAGG
ACATCAGACACGCAGCGGCTATCGCTCGGTACGGGACGTTCAGGAGGTGC
TGGTGCCTGCCAATGTCTCGCCCTCTGATTATATTGCTGTTACACTAGAG
TCACCGGACAGGTAGATATGGTGCTGCAGCAATGTACCAATTGTTACGTG
CACTCTACTTTGTTCTGTTTCTTATGTGGCCGTGTGCAACTCTGCCGACT
GTATCATGCTGTTTTTGCGCTGACCAGCTGGCTGCGACCGCTGGAGGGAA
CCAATGTGTGTACTGCAGTCTGTCAGGTGTACTCTACCTCCACAGCAACT
GTCAAGCACATGACGTGGCAGCTACAGCAAACTAGCCGTGGATGTGGAAT
TGTTGACATGGAAAAATTGTCACCTTTGATCCCTTTCACTCCTAGAGTTC
CTCGGTGTTATTCCTTTCGTAGTACATTTCTTATTTCGTGTCCCTCGATC
CGACTTATTTCGTGGTACACCGGTATGATGTTATCCCCGCCGAAACAAAC
TCCATCCGTCCCAAAGCGGTACTCCCTCCTCCCCCTTCATTTTGGTACGA
GACTAAAGGATTTCTTGTGTCAGAAAGTGTCACACTGGACCTTCACAGGA
GTCGAAGGGTTAAGCGCGAAATATCCGCAAATACAGTTATGCCCAGTATT
ACCCGGGCATCGTATTTTGGTATTTATCAGTTTTTATACCAACTGGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig8251:9540..10538+

>mRNA_H-paniculata_contig8251.16270.1 ID=mRNA_H-paniculata_contig8251.16270.1|Name=mRNA_H-paniculata_contig8251.16270.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at H-paniculata_contig8251:9540..10538+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCTGCAGCAATGTACCAATTGTTACGTGCACTCTACTTTGTTCTG
TTTCTTATGTGGCCGTGTGCAACTCTGCCGACTGTATCATGCTGTTTTTG
CGCTGACCAGCTGGCTGCGACCGCTGGAGGGAACCAATGTGTGTACTGCA
GTCTGTCAGGTGTACTCTACCTCCACAGCAACTGTCAAGCACATGACGTG
GCAGCTACAGCAAACTAGCCGTGGATGTGGAATTGTTGACATGGAAAAAT
TGTCACCTTTGATCCCTTTCACTCCTAGAGTTCCTCGGTGTTATTCCTTT
CGTAGTACATTTCTTATTTCGTGTCCCTCGATCCGACTTATTTCGTGGTA
CACCGGTATGATGTTATCCCCGCCGAAACAAACTCCATCCGTCCCAAAGC
GGTACTCCCTCCTCCCCCTTCATTTTGGTACGAGACTAAAGGATTTCTTG
TGTCAGAAAGTGTCACACTGGACCTTCACAGGAGTCGAAGGGTTAAGCGC
GAAATATCCGCAAATACAGTTATGCCCAGTATTACCCGGGCATCGTATTT
TGGTATTTATCAGTTTTTATACCAACTGGGTGATGGTGCTGCAGCAATGT
ACCAATTGTTACGTGCACTCTACTTTGTTCTGTTTCTTATGTGGCCGTGT
GCAACTCTGCCGACTGTATCATGCTGTTTTTGCGCTGACCAGCTGGCTGC
GACCGCTGGAGGGAACCAATGTGTGTACTGCAGTCTGTCAGGTGTACTCT
ACCTCCACAGCAACTGTCAAGCACATGACGTGGCAGCTACAGCAAACTAG
CCGTGGATGTGGAATTGTTGACATGGAAAAATTGTCACCTTTGATCCCTT
TCACTCCTAGAGTTCCTCGGTGTTATTCCTTTCGTAGTACATTTCTTATT
TCGTGTCCCTCGATCCGACTTATTTCGTGGTACACCGGTATGATGTTATC
CCCGCCGAAACAAACTCCATCCGTCCCAAAGCGGTACTCCCTCCTCCCCC
TTCATTTTGGTACGAGACTAAAGGATTTCTTGTGTCAGAAAGTGTCACAC
TGGACCTTCACAGGAGTCGAAGGGTTAAGCGCGAAATATCCGCAAATACA
GTTATGCCCAGTATTACCCGGGCATCGTATTTTGGTATTTATCAGTTTTT
ATACCAACTGGGTG
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