mRNA_H-paniculata_contig824.16260.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig824.16260.1 vs. uniprot
Match: D7FNN9_ECTSI (Phorbol-ester/DAG-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNN9_ECTSI) HSP 1 Score: 601 bits (1550), Expect = 1.250e-192 Identity = 465/1096 (42.43%), Postives = 562/1096 (51.28%), Query Frame = 2
Query: 230 GSIGIDVDPLEALSESARLALAIRFGRVR-------MCAALSHGHSFEQSIFKLPAKCSGCQELVWGPFNRGCTCLTCKLTAHRACTGMKSMPHCPTKDLFADFCRSELGLT-----------------LPDSTASTPAESTSERKCPTSTFAREVQPESVRKTVGRATGADLGEWAEVEGERNVEEGLMNLARRGQQDSSSLSLCSPPLSSMQEVRDRSSSFSWSPFGVGGGQRKRLLTP--------SDHSYEKLPTSASCDPTDDGDEGTDTAVETVTSPPMLSGAEKVSTEAEDGL-GIAPRDDTTAEEPDVAVCKDGISIA---GLSSFSKISVAGGVVGAVIAGPTGALVGLKLGAVVAAGTWSAQGLWQRIEKDRKQAGAEGSIVGAMEKNGGATAAAATGE-----PRDVWALIAAQVEGEEYLMKWHLDPEQEERLQQGECDAAEVAMFVVGKVLADDTTVPSRLYSALLAEFQSRHRLCDCGRPAENRXXXXXXXX------MGRRSRDTDMVSIFPRADGCRPDTRLAADGAGYGEESAKSGLKGQSSSNDHQKQSEFFAQTPGLEKTFSFVEETELVDGEGSDTFIGEDVESSAG---------EGDQ-GRRDDSAANGDSVAASSRPTSSNSTRISCGEAVPLV--------SRMIKDAAEPITACDSWRNNSSRMDSWVELEGVGCITCGGRVATN------GGSKGRFVSSFVRAEEESAEGLGFGDTWTAAEAPPCWCMDESGLSASPD----SSLQSTQHGPRRDSISSKLEKTQESSAKEEGAPSRDASLEQGFERSKETAQLSAEGDHITATHPGELPSRSPDRSPAVEPPENGGGRKEEENGDGESEVDETKPCDALRDVHGVLRELTRVVLAWCPQIASSDEAAIHAVNCIDQRVFAETYGPVYGHIARGQSVRERDATLERRTRRDARDREAAHRPSLAALCHLEVLASFRAAGAARTGRDKLGFLVRGVEEISAALPTNS-TTDTLLWSLCRHLAAATIATIVLETAATVEAADKAAPALPRPHAEVAFLEQFMRDESWLMGKEGYVLTTVGAALHVLLHPEMSDDVFLDVNP 3289
G+ + DPL LSES RLAL IRFG MCAA+SHGHSF+ SIF+LPAKCS C ELVWGPF RGCTCLTC +T HR+CTG S+P CPTKD+F FCRSELGL T S T + P S TG DL EWA V+G N A GQ S ++D SSFSWSP G+G +RKR +P +P D A ET T+P + VS G G P TTA + VA S G+ +K+SVAGGVVGA+ AG QGLWQRIEK R++AGAEG + + G+TAAA E PRD+WA IA +VE E W L PEQE+ L+QGEC+A E+AMFVVGKVLAD+T + L++ALLAEF+SRH G XXXXXXXX + RRS DTDMV++FPR+ FFA TPGLEKTFSFVEE E+V GEGSDT +D GD+ GRR +A S+P S + ++ A V S +A + + DSWR+NSSRMDSWV+LEG C CGGRVA GGS R + V EE GLG D W AAEAP CWC DE GLSASP+ S L + PR++++ +G + + G + K + A+ + + G P+ G ALRDVHGVLRELT+ VLAWCPQ+ SS EA I AVNCIDQRVF+ETYGPV+G IA + R+ DA+L RR +R+ R R AA RP L + C EV+++ RAAG+ARTGRDKLGFLVR E +S ALP TTD L++S+CRHLAA A AA LPRPHAEVAF+EQFMRDESW+MGKEGYVLTTV AALHVL +PE+SDD+FLD +P
Sbjct: 25 GTAVVPSDPLAGLSESERLALLIRFGAAAAGPKGGGMCAAMSHGHSFQSSIFRLPAKCSACHELVWGPFTRGCTCLTCSVTVHRSCTGAASLPRCPTKDVFDAFCRSELGLPPXXXXXXXXXXXXXXXXXXXXTGSEQGAETPGGRSPASCG-------GAGGGGAAHTGGDLDEWATVDGTS----AHSNSAAVGQXXXXXXXXXXXXASCA--LQDLGSSFSWSPLGLG--ERKRPTSPVVSEXXXXXXXXXXXVPAG-------------DAAAETRTAPG--DAGDTVSALGNQGASGAVP---TTATDLAVAADSSASSTTASMGIRGVTKLSVAGGVVGALFXXXXXXXXXXXXXXXXXAGRSVQQGLWQRIEKSRREAGAEG--IRLPKGADGSTAAAVVEETAARKPRDLWARIAGKVESEHQPTIWELAPEQEKLLEQGECNAGEMAMFVVGKVLADETAMLFHLHAALLAEFRSRHDSSRSGXXXXXXXXXXXXXXXTRPVPIRRRSSDTDMVALFPRSXXXXXXXXXXXXXXXXXXXXXXXXX--------------FFASTPGLEKTFSFVEEAEIVAGEGSDTPGSDDXXXXXXXXXXXXXERSGDRRGRRLPTATRAHRW---SKPVRSEAAGLASAPATAAVAVTAGRRSSVGAAASAAAVASRDSWRSNSSRMDSWVQLEGGVCGNCGGRVAGRHSANGGGGSGSRSTRALVGDVEEDEGGLG--DGWAAAEAPVCWCRDEGGLSASPEDAPISVLANAPPPPRQNAVG-------------DGGVAATTGADSGTKPDKTESGAGADRNGLDRPQNGCCPAAGA-----------GATXXXXXXXXXXXXXXXXXXXXALRDVHGVLRELTQAVLAWCPQLTSSHEAQIQAVNCIDQRVFSETYGPVFGRIASSGAARDGDASLARRVQREERSRAAAGRPPLLSACRPEVVSALRAAGSARTGRDKLGFLVRAAERVSDALPAEQRTTDALIFSVCRHLAAXXXXXXXXXXXXXXXXAQAAA--LPRPHAEVAFVEQFMRDESWVMGKEGYVLTTVIAALHVLNNPELSDDIFLDASP 1040
BLAST of mRNA_H-paniculata_contig824.16260.1 vs. uniprot
Match: A0A7S2M9W4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M9W4_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 5.920e-12 Identity = 70/249 (28.11%), Postives = 108/249 (43.37%), Query Frame = 2
Query: 2591 DGESEVDETKPCDALRDVHGVLRELTRVVLAWCPQIASSDEAAIHAVNCIDQRVFAETYGPVYGHIARGQSVRERDATLERRTRR-----------DARDREAAHRPSLAALCHLEVLASFRAAGAARTGRDKLGFLVRGVEEISAALPTNST-----TDTLLWSLCRHLAAATIATIVLETAATVEAADKAAPALPRPHAEVAFLEQFMRDESWLMGKEGYVLTTVGAALHVLLHPEMSDDVFLDVNP 3289
DGE +V+ ++ C + H +++ +T +L P ++SS + + ++ VF E Y +Y Q +E+D L + R + A +P++AAL RA T +KL V +E IS T DTLL +C+H+ A+ + + HAEVAFLE+F RDE L GKEGY L T+ A+LH L E ++ F + P
Sbjct: 5 DGEDDVNASRIC--RTNAHNIIKHVTATLLEVRPVLSSSSVMTELSADAVELLVFGELYSDIYEEFV--QQTKEQDLNLSNKVRELCDHVKDGGVESGVESSAISQPAIAAL---------RALPQVHTPAEKLNHCVGFLESISEHFSTLYQGKCIDADTLLVMVCQHVVASNVDHL---------------------HAEVAFLEEFARDEQLLSGKEGYALITLQASLHYL---ESLEEFFTVLGP 216
BLAST of mRNA_H-paniculata_contig824.16260.1 vs. uniprot
Match: B7FUU1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FUU1_PHATC) HSP 1 Score: 73.9 bits (180), Expect = 1.540e-9 Identity = 66/229 (28.82%), Postives = 100/229 (43.67%), Query Frame = 2
Query: 2639 DVHGVLRELTRVVLAWCPQIASSDEAAIHAVNCIDQRVFAETYGPVYGHIA---RGQSVRERDATLERRTRRDARDREAAHRPSLAALCHLEVLASFRAAGAARTGRDKLGFLVRGVEEISAALPTNST---TDTLLWSLCRHLAAATIATIVLETAATVEAADKAAPALPRPHAEVAFLEQFMRDESWLMGKEGYVLTTVGAALHVLLHPEMSDDVFLDVNPQGQDVE 3307
D H V++ +T +L P S ++ VF + Y V+G IA + D E + ++E +LAALC L A + DKL + V+ +E +S+ + D+LL C+H+ AA LP+ +AEVAFLE+F RDE L G+EGY L T+ A++H L +S D + D+ Q +D E
Sbjct: 544 DAHAVIKHVTATLLEVRPGFGHSRAITELTAAAVESLVFGKLYDSVFGEIAFETEEIDTKLLDRVAEFEASEHSINKELVSEQALAALCTLPE---------AHSAVDKLHYGVKFLELLSSHFSESGNPICADSLLKMACQHILAAK---------------------LPQMNAEVAFLEEFARDEQLLKGREGYALVTLQASMHFL---NLSQDFYRDIFAQ-EDTE 738
BLAST of mRNA_H-paniculata_contig824.16260.1 vs. uniprot
Match: A0A6U1A6V6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1A6V6_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 9.350e-9 Identity = 65/213 (30.52%), Postives = 106/213 (49.77%), Query Frame = 2
Query: 2633 LRDVHGVLRELTRVVLAWCPQIASSDEAAIHAVNCIDQRVFAETYGPVYGHI-----ARGQSVRER--DATLERRTRRDARDREAAHRPSLAALCHLEVLAS--FRAAGAARTGRDKLGFLVRGVEEISAALPTNSTTDTLLWSLCRHLAAATIATIVLETAATVEAADKAAPALPRPHAEVAFLEQFMRDESWLMGKEGYVLTTVGAALHVL 3244
+ D G+ EL VL + +++ DE+ I +N +D+ V E Y ++ + + ++RE+ A+ ER + + +A ++ +V A+ A ART DK+ LVR VE +AA P T D L+ +L R +A + ++LE P+L H+EVAF ++ RD+ +GKEG+ LT+V AAL VL
Sbjct: 443 ILDAMGLAHELIAAVLHYHERLSQRDESIIATINAVDRVVLGEIYPTLFSDVQGRFRSADTALREKLDHASAERVSDGGSGAEGSASGWDMSEFSQAQVTAAGTLAAVAKARTTLDKMRCLVRAVECTAAACPHAPTADDLVPALARTVALS----MLLE------------PSLAM-HSEVAFTDELCRDDLLCLGKEGFALTSVTAALSVL 638
BLAST of mRNA_H-paniculata_contig824.16260.1 vs. uniprot
Match: A0A7S4EG19_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EG19_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 1.610e-6 Identity = 61/237 (25.74%), Postives = 98/237 (41.35%), Query Frame = 2
Query: 2636 RDVHGVLRELTRVVLAWCPQIASSDEAAIHAVNCIDQRVFAETYGPVYGHIA-----RGQSVRERDATLERRTRRDARDREAAHRPSLAALCHLE--VLASFRAAGAARTGRDKLGFLVRGVEEISAALPTNSTT-----DTLLWSLCRHLAAATIATIVLETAATVEAADKAAPALPRPHAEVAFLEQFMRDESWLMGKEGYVLTTVGAALHVL-LHPEMSDDVFLDVNPQGQDVE 3307
RD H V++ +T +L P S ++ VF E Y V I + + E+ A ERR + + P ++ L + A + DKL + V +E+IS +TT D+LL +C+H+ A + I ++++AFLE+F RDE L G+EGY L T+ A+LH L + D+F G+D++
Sbjct: 816 RDTHAVIKYITTSLLLTRPGFGHSSSFTEKTATAVESLVFGEIYDLVTEEIELEYQNQDDLLLEKIANFERRQDQGEDSLKTPGNPCFGYKSYISEAALEALHCLPRAHSAVDKLRYCVVFLEQISEKFSNTATTSVMGADSLLKMVCQHILLAKVIGI---------------------NSQIAFLEEFARDEQLLRGREGYALVTLQASLHFLNSSTDFESDIF------GEDLD 1025
BLAST of mRNA_H-paniculata_contig824.16260.1 vs. uniprot
Match: A0A7S0XQ13_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0XQ13_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 3.130e-5 Identity = 62/228 (27.19%), Postives = 95/228 (41.67%), Query Frame = 2
Query: 2636 RDVHGVLRELTRVVLAWCPQIASSDEAAIHAVNCIDQRVFAETYGPVYG-----HIARGQSVRERDATLERRT--RRDARDREAAHRPSLAALCHLEVLASFRAAGAARTGRDKLGFLVRGVEEISAALPTNST-----TDTLLWSLCRHLAAATIATIVLETAATVEAADKAAPALPRPHAEVAFLEQFMRDESWLMGKEGYVLTTVGAALHVLLHPEMSDDVFLDV 3283
RD H V++ +T +L P S ++ VF E Y V H A+ + ++ A +++ R D D S AAL L L A + DKL + V +E+IS + D+LL +C+H+ A + I ++++AFLE+F RDE L G+EGY L T+ A+LH L S+D D+
Sbjct: 70 RDAHAVIKYVTTSLLLTRPGFGHSSSLTEKTATAVESLVFGEIYDLVMEEIELEHEAKDNLLLDKIADFDKKQNQREDPIDDGYKSFISEAALEALHCLPQ------AHSAVDKLRYCVVFLEQISDKFSKSKVKSAMGADSLLKMVCQHVLVAKVMGI---------------------NSQIAFLEEFARDEQLLRGREGYALVTLQASLHFL---NASEDFETDI 267 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig824.16260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig824.16260.1 >prot_H-paniculata_contig824.16260.1 ID=prot_H-paniculata_contig824.16260.1|Name=mRNA_H-paniculata_contig824.16260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1055bp MTSSNPNTAPTLPALVGPEEDLVAGSIGIDVDPLEALSESARLALAIRFGback to top mRNA from alignment at H-paniculata_contig824:24435..28414+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig824.16260.1 ID=mRNA_H-paniculata_contig824.16260.1|Name=mRNA_H-paniculata_contig824.16260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3980bp|location=Sequence derived from alignment at H-paniculata_contig824:24435..28414+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig824:24435..28414+ >mRNA_H-paniculata_contig824.16260.1 ID=mRNA_H-paniculata_contig824.16260.1|Name=mRNA_H-paniculata_contig824.16260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6330bp|location=Sequence derived from alignment at H-paniculata_contig824:24435..28414+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |