mRNA_H-paniculata_contig82211.16246.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig82211.16246.1
Unique NamemRNA_H-paniculata_contig82211.16246.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig82211.16246.1 vs. uniprot
Match: A0A0G4ED01_VITBC (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ED01_VITBC)

HSP 1 Score: 58.5 bits (140), Expect = 1.600e-8
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 DVRYHFIRELIARKVLRVEYKKGEDQPADILTKPLERGSFERHRRFLMNLP 153
            DVRYH +REL+   +LRV +  G D PADILTKP++R + E+H R L  +P
Sbjct:  522 DVRYHHVRELVGDGLLRVVHIAGADNPADILTKPMDRATLEKHLRTLKMVP 572
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BLAST of mRNA_H-paniculata_contig82211.16246.1 vs. uniprot
Match: A0A1J6JXT2_NICAT (Uncharacterized protein (Fragment) n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A1J6JXT2_NICAT)

HSP 1 Score: 53.1 bits (126), Expect = 1.190e-7
Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 DVRYHFIRELIARKVLRVEYKKGEDQPADILTKPLERGSFERHRRFL 141
            D RYHFIRE IA+K ++++Y K  DQ ADI TKPL+   F+R R  L
Sbjct:   40 DTRYHFIRECIAKKKVKLKYVKSHDQVADIFTKPLKFEDFQRLRSSL 86
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BLAST of mRNA_H-paniculata_contig82211.16246.1 vs. uniprot
Match: A0A507EMB1_9FUNG (DNA-directed DNA polymerase n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507EMB1_9FUNG)

HSP 1 Score: 55.8 bits (133), Expect = 1.430e-7
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 DVRYHFIRELIARKVLRVEYKKGEDQPADILTKPLERGSFERHR 132
            +VRYH+IREL+  K + V Y K  DQPAD+LTKPL R +F +HR
Sbjct:  532 NVRYHYIRELVNTKQVTVTYIKTADQPADLLTKPLGREAFNKHR 575
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BLAST of mRNA_H-paniculata_contig82211.16246.1 vs. uniprot
Match: A0A507DAW5_9FUNG (DNA-directed DNA polymerase n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507DAW5_9FUNG)

HSP 1 Score: 55.8 bits (133), Expect = 1.440e-7
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 DVRYHFIRELIARKVLRVEYKKGEDQPADILTKPLERGSFERHR 132
            +VRYH+IREL+  K + + Y K  DQPAD+LTKPL R +F +HR
Sbjct:  916 NVRYHYIRELVNTKQVTITYIKTADQPADLLTKPLGRDAFSKHR 959
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BLAST of mRNA_H-paniculata_contig82211.16246.1 vs. uniprot
Match: A0A6A3CMK5_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CMK5_HIBSY)

HSP 1 Score: 55.8 bits (133), Expect = 1.450e-7
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 DVRYHFIRELIARKVLRVEYKKGEDQPADILTKPLERGSFERHRRFL 141
            D+RYH+IRE +ARK + VEY K +DQ ADI TKPL    F R R  L
Sbjct: 1067 DIRYHYIRECVARKDVEVEYMKSQDQVADIFTKPLTSEDFLRLRNLL 1113
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BLAST of mRNA_H-paniculata_contig82211.16246.1 vs. uniprot
Match: A0A6A3D8T4_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3D8T4_HIBSY)

HSP 1 Score: 55.8 bits (133), Expect = 1.450e-7
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 DVRYHFIRELIARKVLRVEYKKGEDQPADILTKPLERGSFERHRRFL 141
            D+RYH+IRE +ARK + VEY K +DQ ADI TKPL    F R R  L
Sbjct: 1190 DIRYHYIRECVARKDVEVEYVKSQDQVADIFTKPLTNEDFLRLRNLL 1236
[Close]
BLAST of mRNA_H-paniculata_contig82211.16246.1 vs. uniprot
Match: A0A6A3ASR8_HIBSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3ASR8_HIBSY)

HSP 1 Score: 55.5 bits (132), Expect = 1.960e-7
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 DVRYHFIRELIARKVLRVEYKKGEDQPADILTKPLERGSFERHRRFL 141
            D+RYH+IRE +ARK + VEY K +DQ ADI TKPL    F R R  L
Sbjct:  440 DIRYHYIRECVARKDVEVEYVKSQDQVADIFTKPLTSEDFLRLRNLL 486
[Close]
BLAST of mRNA_H-paniculata_contig82211.16246.1 vs. uniprot
Match: A0A6A2XI87_HIBSY (CCHC-type domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2XI87_HIBSY)

HSP 1 Score: 55.5 bits (132), Expect = 1.970e-7
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 DVRYHFIRELIARKVLRVEYKKGEDQPADILTKPLERGSFERHRRFL 141
            D+RYH+IRE +ARK + VEY K +DQ ADI TKPL    F R R  L
Sbjct:  807 DIRYHYIRECVARKDVEVEYVKSQDQVADIFTKPLTSEDFLRLRNLL 853
[Close]
BLAST of mRNA_H-paniculata_contig82211.16246.1 vs. uniprot
Match: A0A6A2YP16_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YP16_HIBSY)

HSP 1 Score: 55.5 bits (132), Expect = 1.980e-7
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 DVRYHFIRELIARKVLRVEYKKGEDQPADILTKPLERGSFERHRRFL 141
            D+RYH+IRE +ARK + VEY K +DQ ADI TKPL    F R R  L
Sbjct: 1132 DIRYHYIRECVARKDVEVEYVKSQDQVADIFTKPLTSEDFLRLRNLL 1178
[Close]
BLAST of mRNA_H-paniculata_contig82211.16246.1 vs. uniprot
Match: A0A6A2YJD1_HIBSY (Zinc ion binding, putative isoform 1 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YJD1_HIBSY)

HSP 1 Score: 55.5 bits (132), Expect = 1.980e-7
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 DVRYHFIRELIARKVLRVEYKKGEDQPADILTKPLERGSFERHRRFL 141
            D+RYH+IRE +ARK + VEY K +DQ ADI TKPL    F R R  L
Sbjct:  783 DIRYHYIRECVARKDVEVEYVKSQDQVADIFTKPLTSEDFLRLRNLL 829
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig82211.16246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0G4ED01_VITBC1.600e-852.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1J6JXT2_NICAT1.190e-755.32Uncharacterized protein (Fragment) n=1 Tax=Nicotia... [more]
A0A507EMB1_9FUNG1.430e-759.09DNA-directed DNA polymerase n=1 Tax=Chytriomyces c... [more]
A0A507DAW5_9FUNG1.440e-756.82DNA-directed DNA polymerase n=1 Tax=Chytriomyces c... [more]
A0A6A3CMK5_HIBSY1.450e-757.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3D8T4_HIBSY1.450e-757.45Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
A0A6A3ASR8_HIBSY1.960e-757.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A2XI87_HIBSY1.970e-757.45CCHC-type domain-containing protein n=1 Tax=Hibisc... [more]
A0A6A2YP16_HIBSY1.980e-757.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A2YJD1_HIBSY1.980e-757.45Zinc ion binding, putative isoform 1 n=1 Tax=Hibis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig82211contigH-paniculata_contig82211:6..187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size184
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931031.9146376-CDS-H-paniculata_contig82211:5..1641622931031.9146376-CDS-H-paniculata_contig82211:5..164Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82211 6..164 +
1691481558.72736-CDS-H-paniculata_contig82211:5..1641691481558.72736-CDS-H-paniculata_contig82211:5..164Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82211 6..164 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931031.933582-UTR-H-paniculata_contig82211:164..1871622931031.933582-UTR-H-paniculata_contig82211:164..187Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig82211 165..187 +
1691481558.7374942-UTR-H-paniculata_contig82211:164..1871691481558.7374942-UTR-H-paniculata_contig82211:164..187Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig82211 165..187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig82211.16246.1prot_H-paniculata_contig82211.16246.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig82211 6..164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig82211.16246.1

>prot_H-paniculata_contig82211.16246.1 ID=prot_H-paniculata_contig82211.16246.1|Name=mRNA_H-paniculata_contig82211.16246.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
DVRYHFIRELIARKVLRVEYKKGEDQPADILTKPLERGSFERHRRFLMNL
PE*
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mRNA from alignment at H-paniculata_contig82211:6..187+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig82211.16246.1 ID=mRNA_H-paniculata_contig82211.16246.1|Name=mRNA_H-paniculata_contig82211.16246.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=182bp|location=Sequence derived from alignment at H-paniculata_contig82211:6..187+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGTAAGGTATCACTTCATTCGAGAGTTGATTGCGAGGAAAGTTTTAAG
GGTAGAATACAAGAAGGGTGAGGACCAACCGGCTGACATTCTGACTAAAC
CGCTCGAGCGCGGGTCGTTTGAGCGACATCGTCGTTTCTTGATGAATTTG
CCTGAATGATCGTTGTATCTGTTTTGCTTCAT
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Coding sequence (CDS) from alignment at H-paniculata_contig82211:6..187+

>mRNA_H-paniculata_contig82211.16246.1 ID=mRNA_H-paniculata_contig82211.16246.1|Name=mRNA_H-paniculata_contig82211.16246.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig82211:6..187+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGTAAGGTATCACTTCATTCGAGAGTTGATTGCGAGGAAAGTTTTAAG
GGTAGAATACAAGAAGGGTGAGGACCAACCGGCTGACATTCTGACTAAAC
CGCTCGAGCGCGGGTCGTTTGAGCGACATCGTCGTTTCTTGATGAATTTG
CCTGAATGAGACGTAAGGTATCACTTCATTCGAGAGTTGATTGCGAGGAA
AGTTTTAAGGGTAGAATACAAGAAGGGTGAGGACCAACCGGCTGACATTC
TGACTAAACCGCTCGAGCGCGGGTCGTTTGAGCGACATCGTCGTTTCTTG
ATGAATTTGCCTGAATGA
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