mRNA_H-paniculata_contig82142.16239.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig82142.16239.1
Unique NamemRNA_H-paniculata_contig82142.16239.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig82142.16239.1 vs. uniprot
Match: A0A7C8ZAD7_OPUST (Uncharacterized protein n=2 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8ZAD7_OPUST)

HSP 1 Score: 107 bits (268), Expect = 2.390e-26
Identity = 51/111 (45.95%), Postives = 70/111 (63.06%), Query Frame = 1
Query:    1 MARASMITANMGRRYWAEAVRSAVYCLNRAPTRPHNGGMPYEKWHGETPKLDHLHVFSCTAYIIFQSQQRRKLDDKAWAGVLLGYDEDSPSYRIYNPENKSVQLSRNVRFD 333
            M R+ M    + +R+WAEAV +AVY LN +PT+   G  PYE W G  PK+ HL VF C AY +  SQ R KLD+K+   + +GY   S +Y++YNP +  V +SR+V FD
Sbjct:    1 MGRSMMNARAVPKRFWAEAVATAVYLLNISPTKAVYGRTPYEAWTGNKPKVSHLRVFGCIAYALVHSQLRHKLDEKSEKCIFVGYSTQSKAYKLYNPISGKVLVSRDVVFD 111          
BLAST of mRNA_H-paniculata_contig82142.16239.1 vs. uniprot
Match: A0A1R3HGA4_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HGA4_COCAP)

HSP 1 Score: 110 bits (275), Expect = 7.030e-26
Identity = 50/111 (45.05%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    1 MARASMITANMGRRYWAEAVRSAVYCLNRAPTRPHNGGMPYEKWHGETPKLDHLHVFSCTAYIIFQSQQRRKLDDKAWAGVLLGYDEDSPSYRIYNPENKSVQLSRNVRFD 333
            M+R  +    + +++WAEAV ++VY LNR  TR  NG  PYE W+G  P +DHL +F C  Y      +R KLD KA  G+ LGY  +   YR+YN + + V LSRNV+FD
Sbjct:  456 MSRCLLFEKKLPKKFWAEAVSTSVYLLNRLSTRAINGKTPYEAWYGVKPSVDHLRIFGCICYAYVPEVKRDKLDHKADTGIFLGYSSNVKGYRVYNLKTEKVILSRNVKFD 566          
BLAST of mRNA_H-paniculata_contig82142.16239.1 vs. uniprot
Match: A0A1R3HQR7_COCAP (Integrase catalytic domain-containing protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HQR7_COCAP)

HSP 1 Score: 108 bits (269), Expect = 4.490e-25
Identity = 51/111 (45.95%), Postives = 66/111 (59.46%), Query Frame = 1
Query:    1 MARASMITANMGRRYWAEAVRSAVYCLNRAPTRPHNGGMPYEKWHGETPKLDHLHVFSCTAYIIFQSQQRRKLDDKAWAGVLLGYDEDSPSYRIYNPENKSVQLSRNVRFD 333
            MAR  +    + +++WAEAV +AVY LNR PT+      PYE W G  P + HL VF C  Y    + +R KLD+KA  GV +GY  +   YRIYNP    V LSR+V+FD
Sbjct:  406 MARCLLFEKKLPKKFWAEAVNTAVYLLNRLPTKALKNLTPYEGWSGAKPSVTHLKVFGCVCYTWIPNVKRGKLDEKAQIGVFVGYSIEVKGYRIYNPTTNKVYLSRDVKFD 516          
BLAST of mRNA_H-paniculata_contig82142.16239.1 vs. uniprot
Match: A0A6A3C4D2_HIBSY (FAD-binding Berberine family protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C4D2_HIBSY)

HSP 1 Score: 108 bits (269), Expect = 4.540e-25
Identity = 51/111 (45.95%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    1 MARASMITANMGRRYWAEAVRSAVYCLNRAPTRPHNGGMPYEKWHGETPKLDHLHVFSCTAYIIFQSQQRRKLDDKAWAGVLLGYDEDSPSYRIYNPENKSVQLSRNVRFD 333
            MAR+ +    + R +WAEAVR AVY LNR PT+      P E W G+ P + HL +F C AY     Q R+KLDD+    + +GYDE S +YR+YNP  K + +SR+V FD
Sbjct:  457 MARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFD 567          
BLAST of mRNA_H-paniculata_contig82142.16239.1 vs. uniprot
Match: A0A6A3ACL1_HIBSY (Putative cyclic nucleotide-gated ion channel 8 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3ACL1_HIBSY)

HSP 1 Score: 108 bits (269), Expect = 4.550e-25
Identity = 51/111 (45.95%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    1 MARASMITANMGRRYWAEAVRSAVYCLNRAPTRPHNGGMPYEKWHGETPKLDHLHVFSCTAYIIFQSQQRRKLDDKAWAGVLLGYDEDSPSYRIYNPENKSVQLSRNVRFD 333
            MAR+ +    + R +WAEAVR AVY LNR PT+      P E W G+ P + HL +F C AY     Q R+KLDD+    + +GYDE S +YR+YNP  K + +SR+V FD
Sbjct:  399 MARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFD 509          
BLAST of mRNA_H-paniculata_contig82142.16239.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY)

HSP 1 Score: 108 bits (269), Expect = 4.570e-25
Identity = 51/111 (45.95%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    1 MARASMITANMGRRYWAEAVRSAVYCLNRAPTRPHNGGMPYEKWHGETPKLDHLHVFSCTAYIIFQSQQRRKLDDKAWAGVLLGYDEDSPSYRIYNPENKSVQLSRNVRFD 333
            MAR+ +    + R +WAEAVR AVY LNR PT+      P E W G+ P + HL +F C AY     Q R+KLDD+    + +GYDE S +YR+YNP  K + +SR+V FD
Sbjct: 1425 MARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFD 1535          
BLAST of mRNA_H-paniculata_contig82142.16239.1 vs. uniprot
Match: A0A2G2VUS6_CAPBA (Integrase catalytic domain-containing protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2VUS6_CAPBA)

HSP 1 Score: 106 bits (264), Expect = 2.140e-24
Identity = 51/111 (45.95%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    1 MARASMITANMGRRYWAEAVRSAVYCLNRAPTRPHNGGMPYEKWHGETPKLDHLHVFSCTAYIIFQSQQRRKLDDKAWAGVLLGYDEDSPSYRIYNPENKSVQLSRNVRFD 333
            +AR+ +   ++ R +WAEAVR AVY LNR PT+      P E W G+ P + HL +F C AY     Q R+KLDD+    + +GYDE S +YR YNP  K V +SR+V FD
Sbjct:  957 LARSMVKGKHLPRNFWAEAVRCAVYLLNRCPTKSVRYMTPNEAWSGQKPGVGHLKIFGCIAYSHVPEQLRKKLDDRGEKCIFIGYDERSKAYRFYNPLTKKVIISRDVEFD 1067          
BLAST of mRNA_H-paniculata_contig82142.16239.1 vs. uniprot
Match: A0A1U8L3M3_GOSHI (LOW QUALITY PROTEIN: pleiotropic drug resistance protein 3-like n=3 Tax=Gossypium TaxID=3633 RepID=A0A1U8L3M3_GOSHI)

HSP 1 Score: 106 bits (264), Expect = 2.180e-24
Identity = 47/110 (42.73%), Postives = 66/110 (60.00%), Query Frame = 1
Query:    1 MARASMITANMGRRYWAEAVRSAVYCLNRAPTRPHNGGMPYEKWHGETPKLDHLHVFSCTAYIIFQSQQRRKLDDKAWAGVLLGYDEDSPSYRIYNPENKSVQLSRNVRF 330
            MAR  +  A M   +WAEAV +AVY LNR PT    G  P+E W G+ P + HL VF C  Y++   ++R KLD ++  GV +GY      YR+++P  K V +SR+V+F
Sbjct: 1972 MARCLLFEAKMPNAFWAEAVNTAVYLLNRLPTNAVKGKTPFEAWFGQKPSVSHLKVFGCLCYVLVPKERRTKLDRRSMPGVFVGYSNVKKGYRVFDPLTKKVVVSRDVKF 2081          
BLAST of mRNA_H-paniculata_contig82142.16239.1 vs. uniprot
Match: A0A2I0WJT9_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WJT9_9ASPA)

HSP 1 Score: 101 bits (252), Expect = 2.770e-24
Identity = 44/111 (39.64%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    1 MARASMITANMGRRYWAEAVRSAVYCLNRAPTRPHNGGMPYEKWHGETPKLDHLHVFSCTAYIIFQSQQRRKLDDKAWAGVLLGYDEDSPSYRIYNPENKSVQLSRNVRFD 333
            MAR+ +I  ++ +++WAEAV +AVY LNR PT+      P E W G+ P +DH  +F C  Y+    Q+R KL++K   G+ LGY   S  Y  +N + + +  SR+V+FD
Sbjct:  104 MARSMLIAKDIPKKFWAEAVNTAVYVLNRCPTKAVKDITPIEAWSGDKPSVDHFRIFGCLCYVHIPKQKRHKLEEKPDKGIFLGYSSQSKGYIFFNLKTQQLVTSRDVKFD 214          
BLAST of mRNA_H-paniculata_contig82142.16239.1 vs. uniprot
Match: A0A834LBM9_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834LBM9_RHOSS)

HSP 1 Score: 101 bits (252), Expect = 3.410e-24
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    1 MARASMITANMGRRYWAEAVRSAVYCLNRAPTRPHNGGMPYEKWHGETPKLDHLHVFSCTAYIIFQSQQRRKLDDKAWAGVLLGYDEDSPSYRIYNPENKSVQLSRNVRFD 333
            MAR+ + +  M + +WAEAV  A+Y LNR PTR  +   P E+W G  P + HL +F   AY     ++R KLD+K+   V +GYD  S  Y++YNP N  + +SR++ FD
Sbjct:    1 MARSMLKSKKMPKEFWAEAVDCAIYLLNRCPTRSVDNRTPQEEWGGFKPSVSHLRIFGSIAYAHVPDEKRTKLDEKSEKFVFIGYDSRSKGYKLYNPSNGKIVISRDMEFD 111          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig82142.16239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C8ZAD7_OPUST2.390e-2645.95Uncharacterized protein n=2 Tax=Opuntia streptacan... [more]
A0A1R3HGA4_COCAP7.030e-2645.05Integrase, catalytic core n=1 Tax=Corchorus capsul... [more]
A0A1R3HQR7_COCAP4.490e-2545.95Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3C4D2_HIBSY4.540e-2545.95FAD-binding Berberine family protein n=1 Tax=Hibis... [more]
A0A6A3ACL1_HIBSY4.550e-2545.95Putative cyclic nucleotide-gated ion channel 8 n=1... [more]
A0A6A2WXP0_HIBSY4.570e-2545.95Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=10... [more]
A0A2G2VUS6_CAPBA2.140e-2445.95Integrase catalytic domain-containing protein n=1 ... [more]
A0A1U8L3M3_GOSHI2.180e-2442.73LOW QUALITY PROTEIN: pleiotropic drug resistance p... [more]
A0A2I0WJT9_9ASPA2.770e-2439.64Retrovirus-related Pol polyprotein from transposon... [more]
A0A834LBM9_RHOSS3.410e-2441.44Uncharacterized protein n=1 Tax=Rhododendron simsi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig82142contigH-paniculata_contig82142:104..436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score108.2
Seed ortholog evalue2.5e-21
Seed eggNOG ortholog4558.Sb07g028153.1
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37THH@33090,3GG2K@35493,3IMWS@38820,3M2QC@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size333
Cds size333
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931030.662698-CDS-H-paniculata_contig82142:103..4361622931030.662698-CDS-H-paniculata_contig82142:103..436Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82142 104..436 +
1691481558.2070668-CDS-H-paniculata_contig82142:103..4361691481558.2070668-CDS-H-paniculata_contig82142:103..436Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82142 104..436 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig82142.16239.1prot_H-paniculata_contig82142.16239.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig82142 104..436 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig82142.16239.1

>prot_H-paniculata_contig82142.16239.1 ID=prot_H-paniculata_contig82142.16239.1|Name=mRNA_H-paniculata_contig82142.16239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MARASMITANMGRRYWAEAVRSAVYCLNRAPTRPHNGGMPYEKWHGETPK
LDHLHVFSCTAYIIFQSQQRRKLDDKAWAGVLLGYDEDSPSYRIYNPENK
SVQLSRNVRFD
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mRNA from alignment at H-paniculata_contig82142:104..436+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig82142.16239.1 ID=mRNA_H-paniculata_contig82142.16239.1|Name=mRNA_H-paniculata_contig82142.16239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at H-paniculata_contig82142:104..436+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAGAGCCAGCATGATCACCGCCAACATGGGTCGTAGATATTGGGC GGAGGCGGTGCGCTCGGCGGTATATTGCCTAAATCGTGCCCCGACGCGAC CACACAACGGAGGAATGCCGTACGAAAAATGGCACGGTGAGACACCAAAG TTGGACCACCTTCACGTCTTCAGCTGCACGGCGTATATTATTTTCCAGTC GCAACAGAGACGCAAGCTCGATGACAAAGCATGGGCGGGGGTGCTTTTGG GGTACGACGAGGACAGTCCAAGTTATCGCATATATAACCCGGAAAACAAG AGCGTCCAGTTGAGCAGGAACGTGAGATTTGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig82142:104..436+

>mRNA_H-paniculata_contig82142.16239.1 ID=mRNA_H-paniculata_contig82142.16239.1|Name=mRNA_H-paniculata_contig82142.16239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig82142:104..436+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAGAGCCAGCATGATCACCGCCAACATGGGTCGTAGATATTGGGC
GGAGGCGGTGCGCTCGGCGGTATATTGCCTAAATCGTGCCCCGACGCGAC
CACACAACGGAGGAATGCCGTACGAAAAATGGCACGGTGAGACACCAAAG
TTGGACCACCTTCACGTCTTCAGCTGCACGGCGTATATTATTTTCCAGTC
GCAACAGAGACGCAAGCTCGATGACAAAGCATGGGCGGGGGTGCTTTTGG
GGTACGACGAGGACAGTCCAAGTTATCGCATATATAACCCGGAAAACAAG
AGCGTCCAGTTGAGCAGGAACGTGAGATTTGACATGGCAAGAGCCAGCAT
GATCACCGCCAACATGGGTCGTAGATATTGGGCGGAGGCGGTGCGCTCGG
CGGTATATTGCCTAAATCGTGCCCCGACGCGACCACACAACGGAGGAATG
CCGTACGAAAAATGGCACGGTGAGACACCAAAGTTGGACCACCTTCACGT
CTTCAGCTGCACGGCGTATATTATTTTCCAGTCGCAACAGAGACGCAAGC
TCGATGACAAAGCATGGGCGGGGGTGCTTTTGGGGTACGACGAGGACAGT
CCAAGTTATCGCATATATAACCCGGAAAACAAGAGCGTCCAGTTGAGCAG
GAACGTGAGATTTGAC
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