mRNA_H-paniculata_contig8204.16230.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8204.16230.1
Unique NamemRNA_H-paniculata_contig8204.16230.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8204.16230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8204contigH-paniculata_contig8204:1492..5324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size385
Cds size384
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8204.16230.1prot_H-paniculata_contig8204.16230.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8204 1492..5324 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931029.4731023-CDS-H-paniculata_contig8204:1491..15671622931029.4731023-CDS-H-paniculata_contig8204:1491..1567Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8204 1492..1567 +
1691481557.6799376-CDS-H-paniculata_contig8204:1491..15671691481557.6799376-CDS-H-paniculata_contig8204:1491..1567Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8204 1492..1567 +
1622931029.4925802-CDS-H-paniculata_contig8204:3087..31711622931029.4925802-CDS-H-paniculata_contig8204:3087..3171Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8204 3088..3171 +
1691481557.691691-CDS-H-paniculata_contig8204:3087..31711691481557.691691-CDS-H-paniculata_contig8204:3087..3171Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8204 3088..3171 +
1622931029.510476-CDS-H-paniculata_contig8204:4211..43731622931029.510476-CDS-H-paniculata_contig8204:4211..4373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8204 4212..4373 +
1691481557.7113895-CDS-H-paniculata_contig8204:4211..43731691481557.7113895-CDS-H-paniculata_contig8204:4211..4373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8204 4212..4373 +
1622931029.52583-CDS-H-paniculata_contig8204:5262..53241622931029.52583-CDS-H-paniculata_contig8204:5262..5324Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8204 5263..5324 +
1691481557.723707-CDS-H-paniculata_contig8204:5262..53241691481557.723707-CDS-H-paniculata_contig8204:5262..5324Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8204 5263..5324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8204.16230.1

>prot_H-paniculata_contig8204.16230.1 ID=prot_H-paniculata_contig8204.16230.1|Name=mRNA_H-paniculata_contig8204.16230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
KRAVRLHPWILDENGTGVVFFCSTVGAIQSEFKVSVDLAGDTLMAGNKAN
TFGGAINAYSDVTISVTGKARFVSNVADEGGGINLELSTLVLNCHAKFEN
NTATSNGGGVHALSSHVLLAGAPRFFEN
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mRNA from alignment at H-paniculata_contig8204:1492..5324+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8204.16230.1 ID=mRNA_H-paniculata_contig8204.16230.1|Name=mRNA_H-paniculata_contig8204.16230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3833bp|location=Sequence derived from alignment at H-paniculata_contig8204:1492..5324+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACGTGCAGTGCGATTGCATCCATGGATACTTGATGAAAATGGCACTGG
TGTTGTTTTTTTTTGCTCCACGGTAGGTGAGAGCCTCCGCTACCTTCCTC
CCAATTACTAGATTATGCTACAGTCTGCGGTGACATGACGTGTAAGAGCA
AAGCGATTGGAGGCCAACTCTAAATTGTTCCGAGGTGCACGATCCCCGTA
AATGGAACGTGACACAACAGTTTGTACCACAACGAGGCTTTCTGACCAGG
GCCGTTTTGGCCGCATTTTGCACCTTCAGTCATCGTTGTCCAGTAGCGCT
GCAGTTGCGTTCAGGGGGCGACACTGCAAATGCGGGACGTCCTGGTTTAC
AGGAAGGGTTTGCTGCAGCTACGAAGAGCGGCCGCCGACGGAAAGTCTCA
AGTTTGCGAAATCTAGACCTCCGTTTGTTTCAAAATACGTTATGATCCGC
ACCACTTGCCCGCACGCTACCGCCATCGACCAGCGCATCAAGCACTTTTA
CCAGGCGAACCTTTCAATTGCGGCAAGCTTTTTCGTACACTTTATCGCAT
AAATCGACGGTTTTGAGGTATTTCCTTGATATGAAGATATCTGCATGTTC
TCTGCAATGTGAAACATGGCTTAGTAAAAGTTGTTGCCTGTTAAAAGTGC
TTGATGCGTTGGTCGATGGCGGTAGCGTGCGGGCGAGTGGTGCAGATCAT
AACATATTTTGAAACAAACGGAAGTCTAGATTCGCAAACTTGAGACTTTC
CGTCGGCGGCTGAGAGCTGCTGCAAATCCTTCCTGTGAACCAGGACGTCC
CGCATTTGCAGTGTCGCCCCCTGAGCGCAACTGCAGCGCTACTGGACAAC
GATGACTGGAGGTGCAAAATGCGGCCAAAACGGCCCTGGTCAGAAAGCCT
CGTTGTGGTACAAACTGTCGTGTCACGTTCCATTTACGGGGATCGTGCAC
CTCTCAATAGTATGGGTACATCTTCATTTTGCTATAACACCAATTCAGAA
CAATTTGGAGTTGGCCTCCAATTGCTTGCTGTTGTGTATCATTCTCCATA
GGCTACGTACGGTACGGGACTGTCATAAGAAGATGAAAAAATAGCAGGGA
AAAGGGAGGGGCGGAAATCACCGCTTACACCATACTGAAATCAAGTAGTT
TTGAGTCCCAGAAATACCCGAAGATGCCAAACGTAACACAAGACGGCATT
GCAGTATGCGTACACTACTGCGATGATTGCCGACGGGTAAGCGTAGCAGT
CGACTACGACAAGCTCGATTCGGGAAAATGATTCTGAAAAAATATGTTGA
TCACGATCCCGAAATGAATTGCAAGCGAAGAACTGCTGCGGGCTGGCAGT
GGGACCCATGCGGTGTCTTTTGTCTACTGTTTTGGGACAGCACACAAAAA
ATTCATGATTTTTTTTACAAAAAAGTGATATTTATATGTACATATATATA
TATATATATATATATATACATATATATACTCCGGAGTAGATAATATGTTA
ATTCGCCAAAACTAAGGGTTGGAAGGTGGTTGGGGCTCTACAAATCTGAC
CCTGAACCTTCCTCGGCTACTTTTTGTTTTGCTTTTTTTTTTGCAGGTGC
TATTCAGTCAGAATTTAAGGTAAGTGTGGACCTAGCTGGAGATACGCTCA
TGGCGGGAAACAAGGCCAACACCTTCGGAGGTGTGCTCGGTCTACTGCTC
CTCCTGTGTTCATTATCCTTTGTTTACATATGGTCTCTTTCGTTATAAAA
AAAATGGCTTCACATGTTGCCTCTAACACAACCCGACTTATGAAATAACT
GTCAAGTTGTATCACTCTTTCATCTCCTTCTGCCCACCCCGAGCTTCTTT
TTTTTTTTTTTTAACCCCCGGAAGGTCAGGCAAAAAACCCTTTCCGCTAC
CCCGAGCTTCTTTCACATGATCGTAACCCCAGACGTTTGGGTCTCTATAA
GAAAAGCTCCAGAAAGGCGTCTTTGTTGTGATGAAGTTCCGAGAGAATAC
GTTGTCGATGCAATTATCCTTTCGTCGTGTGATACTTGATGTTTGGTATC
CGCTGGTAAGTCTGCTCGGCACTTACAGGCAAGGCAAGGCAGTACGTGGG
TCAACAGAAGTTGAGCATAGGGAGTGCGGTGTCGTATGATCACTGCTTGC
GACGATAACGCTCTATGGTTGACGCCGGTTGGATCCTGGTAAGGCCTGTG
CTACGCAAGTCTTTTCTTCCCCCCTCCGTTTTTCTGAATATCGTAAATCG
TGTACCTGATTGTACGGAATGTATGAGGTCATCATCCTGTACATAACCCC
ATTTTCTTTTCTCCACTTTGTAACTTTGCTATCGTGATTACTACCGGTTT
TCGGAAAAAGGGTAAAAGGAGAGGGTAAAAAATACGGGCAAAAAAATGCG
CTCGTTTCGCACGGCTCTAAGATATATACGCGCCTTTTCACATCATTTTG
CCCCATACCCCCTGCCCAATCTATGACCCGGTTTTGATGCTCGCTGGCTG
GTGATATATCTCAAGTATACACAGCTATGAGATACGATACAAGCTGGTTA
ATACCTTCCCTCATTTAGGCTCCGTCCTCCCGCGAGGACGCGTGGTAAAT
AGTCCACAGTCCAACAACCATGGCATGAAAAACATGAGTATGACCCCCCC
CCCCCATCCTTACCACGTACGTCCCTTGCATCTCTTGCATATTGACAATT
TTCTAATGATGGGTGGGCAGGTGCCATCAACGCGTATTCTGATGTAACGA
TTTCGGTCACGGGGAAGGCTCGGTTCGTTAGCAACGTGGCGGATGAAGGA
GGGGGAATTAATCTGGAATTATCGACGTTGGTGCTCAACTGCCACGCCAA
GTTCGAAAACAACACTGCAACAAGCAACGGAGGCAAGAAAATCCGGACGG
ACCAGACCAGAAAGAAGAACGTTCTGTTCGCGACCCGACCCTACTTTTTC
TGTCCCCTACGTTTTTTTTCTCGTGTTTTTTTTTTTCAAATTTCCAACCA
TTTTTTATGGGTAGCCTATTATTTCTTCAAATAACCGTCTGCTCTGTGAC
GCGATTGATCTCATGGTTCAATTTTTTGTTCATACACTTAATACAACCAT
GATATCTACGGTTGAGCGTTGAACGGCTCTTGGTACCTTTATGGACGTAA
ACGAGTGCTTCAGCAGCAGTCAAGATCCGAATTATGTCCTTATTTAGGGG
TCAAACGGGTTAGGGTGTATTTTACTGGGAGGCCACACGCATGTATATAT
TTCTACGCATGTCCCGCGTGCAACGTTTGGCATGCCAATAGATGGTACGG
TACGGTAGACATGCAGGGGCGGGAGGGGGGGGACTCATGTGGTGCCTGTT
AGCACCAGTTCTAGCTGCCATACACATCTTCCCTTTTAAGGATTTATTTT
TCCCTTCGCACGTTCTCCGTGTAATGAGGTTTTGTGTCCCAGTGTGTTGT
TTATAAAGGACACGGAACAATTTTGCCAAAAAAAATAGACGTGAAGAGAT
ACATAATTCAAATGTTCCTTGTTTTGCTTCCGTGATGAATATTCGCTTAA
GAAAACGATGCTGCTACAAGTTTAAGACTTGAGCAAAATAAGCGTTTCTC
ATGTGCTACCGTATGTACTGTTGCACCACACTTGCTTGAGTTGGTCTACT
GGTCACACCACTTCGCTTAATGTCAACCTCAGTCCCCCCCCCCCTCCCCG
TCCCCAATACACACACCGCCCTCCCGGCTGCCTGCGTCCGAACCATCAAC
CCTAAACAACAAAATTACTAGGTGGCGTGCATGCACTCTCCTCCCACGTG
CTACTGGCGGGTGCTCCCCGGTTCTTCGAAAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig8204:1492..5324+

>mRNA_H-paniculata_contig8204.16230.1 ID=mRNA_H-paniculata_contig8204.16230.1|Name=mRNA_H-paniculata_contig8204.16230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig8204:1492..5324+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACGTGCAGTGCGATTGCATCCATGGATACTTGATGAAAATGGCACTGG
TGTTGTTTTTTTTTGCTCCACGGTAGAAACGTGCAGTGCGATTGCATCCA
TGGATACTTGATGAAAATGGCACTGGTGTTGTTTTTTTTTGCTCCACGGT
AGGTGCTATTCAGTCAGAATTTAAGGTAAGTGTGGACCTAGCTGGAGATA
CGCTCATGGCGGGAAACAAGGCCAACACCTTCGGAGGTGCTATTCAGTCA
GAATTTAAGGTAAGTGTGGACCTAGCTGGAGATACGCTCATGGCGGGAAA
CAAGGCCAACACCTTCGGAGGTGCCATCAACGCGTATTCTGATGTAACGA
TTTCGGTCACGGGGAAGGCTCGGTTCGTTAGCAACGTGGCGGATGAAGGA
GGGGGAATTAATCTGGAATTATCGACGTTGGTGCTCAACTGCCACGCCAA
GTTCGAAAACAACACTGCAACAAGCAACGGAGGTGCCATCAACGCGTATT
CTGATGTAACGATTTCGGTCACGGGGAAGGCTCGGTTCGTTAGCAACGTG
GCGGATGAAGGAGGGGGAATTAATCTGGAATTATCGACGTTGGTGCTCAA
CTGCCACGCCAAGTTCGAAAACAACACTGCAACAAGCAACGGAGGTGGCG
TGCATGCACTCTCCTCCCACGTGCTACTGGCGGGTGCTCCCCGGTTCTTC
GAAAATGTGGCGTGCATGCACTCTCCTCCCACGTGCTACTGGCGGGTGCT
CCCCGGTTCTTCGAAAAT
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