mRNA_H-paniculata_contig8203.16229.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8203.16229.1
Unique NamemRNA_H-paniculata_contig8203.16229.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8203.16229.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 4.850e-16
Identity = 36/63 (57.14%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 KADRQVIEDNTRKSIIAQGDNQPLDCVFMSADSANQTAHASPVLYPPTHDGDRGYAEQQKLMA 189
            +ADR VI + T  ++ A+ D +PL+ VFMS D+AN T+HA P +YPPTH GDRGY+E+QK+MA
Sbjct:  104 QADRLVIANRTGDAMRAKADGKPLNFVFMSIDAANSTSHALPAIYPPTHGGDRGYSERQKIMA 166
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8203.16229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JUU1_9PHAE4.850e-1657.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8203contigH-paniculata_contig8203:9047..9727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size194
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931029.374963-CDS-H-paniculata_contig8203:9047..90811622931029.374963-CDS-H-paniculata_contig8203:9047..9081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8203 9048..9081 -
1691481557.6581998-CDS-H-paniculata_contig8203:9047..90811691481557.6581998-CDS-H-paniculata_contig8203:9047..9081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8203 9048..9081 -
1622931029.3889492-CDS-H-paniculata_contig8203:9569..97271622931029.3889492-CDS-H-paniculata_contig8203:9569..9727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8203 9570..9727 -
1691481557.669226-CDS-H-paniculata_contig8203:9569..97271691481557.669226-CDS-H-paniculata_contig8203:9569..9727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8203 9570..9727 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8203.16229.1prot_H-paniculata_contig8203.16229.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8203 9048..9727 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8203.16229.1

>prot_H-paniculata_contig8203.16229.1 ID=prot_H-paniculata_contig8203.16229.1|Name=mRNA_H-paniculata_contig8203.16229.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
KADRQVIEDNTRKSIIAQGDNQPLDCVFMSADSANQTAHASPVLYPPTHD
GDRGYAEQQKLMAT
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mRNA from alignment at H-paniculata_contig8203:9047..9727-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8203.16229.1 ID=mRNA_H-paniculata_contig8203.16229.1|Name=mRNA_H-paniculata_contig8203.16229.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=681bp|location=Sequence derived from alignment at H-paniculata_contig8203:9047..9727- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCAGATCGACAGGTGATTGAGGACAATACTCGGAAAAGCATAATTGC
CCAGGGCGACAACCAGCCTCTCGACTGCGTCTTCATGAGCGCAGATTCAG
CCAACCAGACAGCCCATGCCTCGCCTGTACTGTACCCGCCAACGCATGAT
GGGGACAGGTAGGCCCCAACCCAGTCTGGTATAGGAGGAGGTTGACGAGT
TATTCCTCTTGTAGGGTACTTTATACAACTATAGAGATACAGAGTAACTA
GCTGACGCTCGTGGGTCGTTTCCCCCTATCATGAGCCTGTTAATGTGCAG
CCTTACTGAGTGATACTTGGTAGTAATAGTGATGAATCTGATTGTTGTGA
AAGCTGATTGTTGTCATAAAATTTCTGACTTTTACTCTTCGTATGCAACA
GGCTAATTCCACCGCTTTTTAGAGCGCAAATTATATTCACCTGCATCCGT
ATAAACGCTCCCACATCTATTTGCCGAGAACGAAGATCGTATTGCTTTCT
AATGTGCTGTGTAAACGAAGAGTGTGCAGGCACTTCGCCGTGTTGTATGC
CGCACAATATTCAACGTTATCGAGCGACAAGTTAGTATATTCTCCGGGGG
CTTTGCCACGGTATCGTTGTAAACCATGAATGTGTTTTCCATGCAGGGGC
TACGCTGAGCAGCAGAAGCTTATGGCTACTA
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Coding sequence (CDS) from alignment at H-paniculata_contig8203:9047..9727-

>mRNA_H-paniculata_contig8203.16229.1 ID=mRNA_H-paniculata_contig8203.16229.1|Name=mRNA_H-paniculata_contig8203.16229.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig8203:9047..9727- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCAGATCGACAGGTGATTGAGGACAATACTCGGAAAAGCATAATTGC
CCAGGGCGACAACCAGCCTCTCGACTGCGTCTTCATGAGCGCAGATTCAG
CCAACCAGACAGCCCATGCCTCGCCTGTACTGTACCCGCCAACGCATGAT
GGGGACAGAAGGCAGATCGACAGGTGATTGAGGACAATACTCGGAAAAGC
ATAATTGCCCAGGGCGACAACCAGCCTCTCGACTGCGTCTTCATGAGCGC
AGATTCAGCCAACCAGACAGCCCATGCCTCGCCTGTACTGTACCCGCCAA
CGCATGATGGGGACAGGGGCTACGCTGAGCAGCAGAAGCTTATGGCTACT
GGGCTACGCTGAGCAGCAGAAGCTTATGGCTACT
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