mRNA_H-paniculata_contig8202.16228.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8202.16228.1
Unique NamemRNA_H-paniculata_contig8202.16228.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8202.16228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8202contigH-paniculata_contig8202:5762..6275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size514
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8202.16228.1prot_H-paniculata_contig8202.16228.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8202 5806..6126 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931029.1805613-UTR-H-paniculata_contig8202:5761..58051622931029.1805613-UTR-H-paniculata_contig8202:5761..5805Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8202 5762..5805 +
1691481557.5817769-UTR-H-paniculata_contig8202:5761..58051691481557.5817769-UTR-H-paniculata_contig8202:5761..5805Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8202 5762..5805 +
1622931029.2171385-UTR-H-paniculata_contig8202:6126..62751622931029.2171385-UTR-H-paniculata_contig8202:6126..6275Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8202 6127..6275 +
1691481557.607781-UTR-H-paniculata_contig8202:6126..62751691481557.607781-UTR-H-paniculata_contig8202:6126..6275Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8202 6127..6275 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931029.199311-CDS-H-paniculata_contig8202:5805..61261622931029.199311-CDS-H-paniculata_contig8202:5805..6126Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8202 5806..6126 +
1691481557.599451-CDS-H-paniculata_contig8202:5805..61261691481557.599451-CDS-H-paniculata_contig8202:5805..6126Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8202 5806..6126 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8202.16228.1

>prot_H-paniculata_contig8202.16228.1 ID=prot_H-paniculata_contig8202.16228.1|Name=mRNA_H-paniculata_contig8202.16228.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MVLPWREIIRIVCFQRPLSSVSSPLLVLLALSLLLLHPHSAQGLGGSRSS
LFELSAHVTELSEETLAAIEADPTQPWAINAYSPACPHCQHFASTVGWTM
VLMYCL*
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mRNA from alignment at H-paniculata_contig8202:5762..6275+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8202.16228.1 ID=mRNA_H-paniculata_contig8202.16228.1|Name=mRNA_H-paniculata_contig8202.16228.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=514bp|location=Sequence derived from alignment at H-paniculata_contig8202:5762..6275+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCGGACCATGTTTGAGTCCGACACAGTGCATCTCTTAAAGTGATGGTG
TTACCGTGGAGAGAAATCATACGCATTGTGTGTTTTCAAAGGCCACTGTC
TTCGGTTTCCAGCCCTCTTCTTGTTCTATTAGCGCTCTCGTTGTTGTTGC
TGCACCCGCATTCTGCGCAAGGGCTCGGCGGCAGCCGGTCTTCGCTGTTC
GAGCTTTCGGCCCACGTTACAGAGCTTAGCGAGGAGACTCTTGCGGCCAT
CGAGGCCGACCCCACTCAGCCTTGGGCCATCAACGCCTACTCCCCGGCCT
GCCCACACTGCCAACATTTTGCTTCCACGGTGGGTTGGACGATGGTGCTG
ATGTATTGTCTGTAGTATTTGTGGTGGTTTGAGTTCGAGTGCACCGGTTT
CTCCGCTCCTTGTTGATGAATTCTCAAAGCTTTCCATAGTATGAAATTAG
CGATACACCCCCTGAAAGATTGCACAGTAGTCTGGTATAGCATTTCAACC
CATTTACTGTCTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig8202:5762..6275+

>mRNA_H-paniculata_contig8202.16228.1 ID=mRNA_H-paniculata_contig8202.16228.1|Name=mRNA_H-paniculata_contig8202.16228.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig8202:5762..6275+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTTACCGTGGAGAGAAATCATACGCATTGTGTGTTTTCAAAGGCC
ACTGTCTTCGGTTTCCAGCCCTCTTCTTGTTCTATTAGCGCTCTCGTTGT
TGTTGCTGCACCCGCATTCTGCGCAAGGGCTCGGCGGCAGCCGGTCTTCG
CTGTTCGAGCTTTCGGCCCACGTTACAGAGCTTAGCGAGGAGACTCTTGC
GGCCATCGAGGCCGACCCCACTCAGCCTTGGGCCATCAACGCCTACTCCC
CGGCCTGCCCACACTGCCAACATTTTGCTTCCACGGTGGGTTGGACGATG
GTGCTGATGTATTGTCTGTAGATGGTGTTACCGTGGAGAGAAATCATACG
CATTGTGTGTTTTCAAAGGCCACTGTCTTCGGTTTCCAGCCCTCTTCTTG
TTCTATTAGCGCTCTCGTTGTTGTTGCTGCACCCGCATTCTGCGCAAGGG
CTCGGCGGCAGCCGGTCTTCGCTGTTCGAGCTTTCGGCCCACGTTACAGA
GCTTAGCGAGGAGACTCTTGCGGCCATCGAGGCCGACCCCACTCAGCCTT
GGGCCATCAACGCCTACTCCCCGGCCTGCCCACACTGCCAACATTTTGCT
TCCACGGTGGGTTGGACGATGGTGCTGATGTATTGTCTGTAG
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