mRNA_H-paniculata_contig8198.16221.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8198.16221.1
Unique NamemRNA_H-paniculata_contig8198.16221.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8198.16221.1 vs. uniprot
Match: D8LDM9_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM9_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 7.060e-11
Identity = 29/46 (63.04%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 CAVCGSGFKG-LKRKHHCRNCGRLVCGNCSNHCWIPTMLPFTYRVD 135
            CAVC S F   LKR+HHCRNCGRLVC  C+   W  +MLP TY VD
Sbjct:   58 CAVCDSTFGYVLKRRHHCRNCGRLVCSACAERFWPRSMLPPTYNVD 103
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BLAST of mRNA_H-paniculata_contig8198.16221.1 vs. uniprot
Match: A0A6H5KTC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC5_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.560e-10
Identity = 29/46 (63.04%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 CAVCGSGFKG-LKRKHHCRNCGRLVCGNCSNHCWIPTMLPFTYRVD 135
            CAVC S F   LKR+HHCRNCGRLVC  C+   W  +MLP TY VD
Sbjct:  382 CAVCDSTFGYVLKRRHHCRNCGRLVCSACAERFWPRSMLPPTYNVD 427
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BLAST of mRNA_H-paniculata_contig8198.16221.1 vs. uniprot
Match: A0A482RTU5_9ARCH (FYVE-type domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTU5_9ARCH)

HSP 1 Score: 58.2 bits (139), Expect = 1.240e-8
Identity = 21/46 (45.65%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:    1 CAVCGSGFKGLKRKHHCRNCGRLVCGNCSNHCWIPTMLPFTYRVDK 138
            C +C +GF   ++ HHCRNCG +VC +CS+  W   MLP TY   +
Sbjct:  234 CVLCRTGFSMFRKPHHCRNCGHIVCPDCSDRLWPAGMLPSTYHDQE 279
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BLAST of mRNA_H-paniculata_contig8198.16221.1 vs. uniprot
Match: A0A6H5KUU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU5_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.700e-8
Identity = 25/48 (52.08%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:    1 CAVCGSGFKGL--KRKHHCRNCGRLVCGNCSNHCWIPTMLPFTYRVDK 138
            CA C S F+ +  +RKHHCRNCGRLVC  C+   W   MLP +YR   
Sbjct:  591 CAECQSSFRPVFQRRKHHCRNCGRLVCTTCAWRFWPKHMLPHSYRTSS 638
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BLAST of mRNA_H-paniculata_contig8198.16221.1 vs. uniprot
Match: D7FYF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF4_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 8.150e-8
Identity = 24/48 (50.00%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:    1 CAVCGSGFKGL--KRKHHCRNCGRLVCGNCSNHCWIPTMLPFTYRVDK 138
            CA C S F+ +  +R+HHCRNCGRLVC  C+   W   MLP +YR   
Sbjct:  521 CAECQSVFRPVLQRRRHHCRNCGRLVCTTCALRFWPKHMLPHSYRTSS 568
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BLAST of mRNA_H-paniculata_contig8198.16221.1 vs. uniprot
Match: A0A7S1U598_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U598_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.110e-7
Identity = 25/46 (54.35%), Postives = 28/46 (60.87%), Query Frame = 1 
Query:    1 CAVCGSGFKGLKRKHHCRNCGRLVCGNCSNHCWIPTMLPFTYRVDK 138
            C VC S F  L+R+HHCRNCG LVC NCS+H      LP     DK
Sbjct:  353 CEVCNSAFTLLRRRHHCRNCGDLVCSNCSSH---KIELPHLKSKDK 395
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BLAST of mRNA_H-paniculata_contig8198.16221.1 vs. uniprot
Match: A0A7S1C966_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C966_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.390e-7
Identity = 20/31 (64.52%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:    1 CAVCGSGFKGLKRKHHCRNCGRLVCGNCSNH 93
            C  CG+GF  + R+HHCRNCG +VCG+CSNH
Sbjct:  203 CQRCGTGFGFMTRRHHCRNCGAVVCGSCSNH 233
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BLAST of mRNA_H-paniculata_contig8198.16221.1 vs. uniprot
Match: A0A8J8T692_HALGN (FYVE-type domain-containing protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8T692_HALGN)

HSP 1 Score: 53.1 bits (126), Expect = 1.990e-7
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:    1 CAVCGSGFKGLKRKHHCRNCGRLVCGNCSNHCW 99
            C +C S F  LKRKHHCR CG LVCG+CS + W
Sbjct:   65 CTLCKSKFSILKRKHHCRKCGVLVCGSCSGNSW 97
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BLAST of mRNA_H-paniculata_contig8198.16221.1 vs. uniprot
Match: A0A074WNQ6_9PEZI (FYVE-domain-containing protein n=1 Tax=Aureobasidium namibiae CBS 147.97 TaxID=1043004 RepID=A0A074WNQ6_9PEZI)

HSP 1 Score: 54.3 bits (129), Expect = 2.840e-7
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:    1 CAVCGSGFKGLKRKHHCRNCGRLVCGNCSNH 93
            C++CG+ F  L R+HHCR CGRLVCG CS H
Sbjct:   19 CSICGNAFTFLNRRHHCRRCGRLVCGPCSPH 49
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BLAST of mRNA_H-paniculata_contig8198.16221.1 vs. uniprot
Match: A0A074YNV1_AURSE (Uncharacterized protein n=1 Tax=Aureobasidium subglaciale (strain EXF-2481) TaxID=1043005 RepID=A0A074YNV1_AURSE)

HSP 1 Score: 54.3 bits (129), Expect = 2.840e-7
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:    1 CAVCGSGFKGLKRKHHCRNCGRLVCGNCSNH 93
            C++CG+ F  L R+HHCR CGRLVCG CS H
Sbjct:   19 CSICGNAFTFLNRRHHCRRCGRLVCGPCSPH 49
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8198.16221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDM9_ECTSI7.060e-1163.04FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KTC5_9PHAE1.560e-1063.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482RTU5_9ARCH1.240e-845.65FYVE-type domain-containing protein (Fragment) n=1... [more]
A0A6H5KUU5_9PHAE1.700e-852.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYF4_ECTSI8.150e-850.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1U598_9STRA1.110e-754.35Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1C966_9STRA1.390e-764.52Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A8J8T692_HALGN1.990e-763.64FYVE-type domain-containing protein n=1 Tax=Halter... [more]
A0A074WNQ6_9PEZI2.840e-764.52FYVE-domain-containing protein n=1 Tax=Aureobasidi... [more]
A0A074YNV1_AURSE2.840e-764.52Uncharacterized protein n=1 Tax=Aureobasidium subg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8198contigH-paniculata_contig8198:10177..10317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue2.9e-08
Seed eggNOG ortholog2880.D8LDM9
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.lipid binding
EggNOG OGsKOG1729@1,KOG1729@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size141
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931027.6558664-CDS-H-paniculata_contig8198:10176..103171622931027.6558664-CDS-H-paniculata_contig8198:10176..10317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8198 10177..10317 +
1691481556.8098204-CDS-H-paniculata_contig8198:10176..103171691481556.8098204-CDS-H-paniculata_contig8198:10176..10317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8198 10177..10317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8198.16221.1prot_H-paniculata_contig8198.16221.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8198 10177..10317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8198.16221.1

>prot_H-paniculata_contig8198.16221.1 ID=prot_H-paniculata_contig8198.16221.1|Name=mRNA_H-paniculata_contig8198.16221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
CAVCGSGFKGLKRKHHCRNCGRLVCGNCSNHCWIPTMLPFTYRVDK*
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mRNA from alignment at H-paniculata_contig8198:10177..10317+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8198.16221.1 ID=mRNA_H-paniculata_contig8198.16221.1|Name=mRNA_H-paniculata_contig8198.16221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=141bp|location=Sequence derived from alignment at H-paniculata_contig8198:10177..10317+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGCAGTGTGCGGCTCGGGTTTCAAGGGACTGAAACGCAAGCACCACTG
CCGCAACTGCGGTCGCCTTGTGTGTGGCAACTGTTCGAACCATTGTTGGA
TACCAACAATGCTCCCGTTCACCTACAGGGTAGATAAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig8198:10177..10317+

>mRNA_H-paniculata_contig8198.16221.1 ID=mRNA_H-paniculata_contig8198.16221.1|Name=mRNA_H-paniculata_contig8198.16221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig8198:10177..10317+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGCAGTGTGCGGCTCGGGTTTCAAGGGACTGAAACGCAAGCACCACTG
CCGCAACTGCGGTCGCCTTGTGTGTGGCAACTGTTCGAACCATTGTTGGA
TACCAACAATGCTCCCGTTCACCTACAGGGTAGATAAGTGATGTGCAGTG
TGCGGCTCGGGTTTCAAGGGACTGAAACGCAAGCACCACTGCCGCAACTG
CGGTCGCCTTGTGTGTGGCAACTGTTCGAACCATTGTTGGATACCAACAA
TGCTCCCGTTCACCTACAGGGTAGATAAGTGA
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