mRNA_H-paniculata_contig81966.16218.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig81966.16218.1
Unique NamemRNA_H-paniculata_contig81966.16218.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig81966.16218.1 vs. uniprot
Match: A0A6H5JPW7_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPW7_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 3.650e-17
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 3 
Query:  138 HAHICHRAGAQVDQHQPLLHAVTRLPKRLGIRSTVEDGDPFTADRDYRMDILVPEGELRDAPINAYRVKGLLIDVTHADPQLAGH 392
            HA  C R GAQV+ H+PL +A++R    L ++  VE G PFT +R+  MDI++  G L +A    YR KG+L+DVTHADPQ   H
Sbjct:   95 HARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVH 179
[Close]
BLAST of mRNA_H-paniculata_contig81966.16218.1 vs. uniprot
Match: A0A6H5KDZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ4_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 6.960e-17
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 3 
Query:  138 HAHICHRAGAQVDQHQPLLHAVTRLPKRLGIRSTVEDGDPFTADRDYRMDILVPEGELRDAPINAYRVKGLLIDVTHADPQLAGH 392
            HA  C R GAQV+ H+PL +A++R    L ++  VE G PFT +R+  MDI++  G L +A    YR KG+L+DVTHADPQ   H
Sbjct:  172 HARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVH 256
[Close]
BLAST of mRNA_H-paniculata_contig81966.16218.1 vs. uniprot
Match: A0A6H5KEX1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEX1_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 7.620e-17
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 3 
Query:  138 HAHICHRAGAQVDQHQPLLHAVTRLPKRLGIRSTVEDGDPFTADRDYRMDILVPEGELRDAPINAYRVKGLLIDVTHADPQLAGH 392
            HA  C R GAQV+ H+PL +A++R    L ++  VE G PFT +R+  MDI++  G L +A    YR KG+L+DVTHADPQ   H
Sbjct:   95 HARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVH 179
[Close]
BLAST of mRNA_H-paniculata_contig81966.16218.1 vs. uniprot
Match: A0A6H5K198_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K198_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 8.910e-17
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 3 
Query:  138 HAHICHRAGAQVDQHQPLLHAVTRLPKRLGIRSTVEDGDPFTADRDYRMDILVPEGELRDAPINAYRVKGLLIDVTHADPQLAGH 392
            HA  C R GAQV+ H+PL +A++R    L ++  VE G PFT +R+  MDI++  G L +A    YR KG+L+DVTHADPQ   H
Sbjct:  118 HARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVH 202
[Close]
BLAST of mRNA_H-paniculata_contig81966.16218.1 vs. uniprot
Match: A0A6H5LLI3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLI3_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 9.570e-17
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 3 
Query:  138 HAHICHRAGAQVDQHQPLLHAVTRLPKRLGIRSTVEDGDPFTADRDYRMDILVPEGELRDAPINAYRVKGLLIDVTHADPQLAGH 392
            HA  C R GAQV+ H+PL +A++R    L ++  VE G PFT +R+  MDI++  G L +A    YR KG+L+DVTHADPQ   H
Sbjct:  261 HARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVH 345
[Close]
BLAST of mRNA_H-paniculata_contig81966.16218.1 vs. uniprot
Match: A0A6H5JQ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ53_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 9.720e-17
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 3 
Query:  138 HAHICHRAGAQVDQHQPLLHAVTRLPKRLGIRSTVEDGDPFTADRDYRMDILVPEGELRDAPINAYRVKGLLIDVTHADPQLAGH 392
            HA  C R GAQV+ H+PL +A++R    L ++  VE G PFT +R+  MDI++  G L +A    YR KG+L+DVTHADPQ   H
Sbjct:  270 HARTCQRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVH 354
[Close]
BLAST of mRNA_H-paniculata_contig81966.16218.1 vs. uniprot
Match: A0A6H5K195_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K195_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.540e-16
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 3 
Query:  138 HAHICHRAGAQVDQHQPLLHAVTRLPKRLGIRSTVEDGDPFTADRDYRMDILVPEGELRDAPINAYRVKGLLIDVTHADPQLAGH 392
            HA  C R GAQV+ H+PL +A++R    L ++  VE G PFT +R+  MDI++  G L +A    YR KG+L+DVTHADPQ   H
Sbjct:  974 HARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRKKGILLDVTHADPQAQVH 1058
[Close]
BLAST of mRNA_H-paniculata_contig81966.16218.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 2.110e-16
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 3 
Query:  138 HAHICHRAGAQVDQHQPLLHAVTRLPKRLGIRSTVEDGDPFTADRDYRMDILVPEGELRDAPINAYRVKGLLIDVTHADPQLAGH 392
            HA  C R GAQV+ H+PL +A++R    L ++  VE G PFT +R+  MDI++  G L +A    YR KG+L+DVTHADPQ   H
Sbjct: 1017 HARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVH 1101
[Close]
BLAST of mRNA_H-paniculata_contig81966.16218.1 vs. uniprot
Match: A0A6H5KUZ8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ8_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.740e-16
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 3 
Query:  138 HAHICHRAGAQVDQHQPLLHAVTRLPKRLGIRSTVEDGDPFTADRDYRMDILVPEGELRDAPINAYRVKGLLIDVTHADPQ 380
            HA  C R GAQV+ H+PL +A++R    L ++  VE G PFT +R+  MDI++  G L +A    YR KG+L+DVTHADPQ
Sbjct:  563 HARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQ 643
[Close]
BLAST of mRNA_H-paniculata_contig81966.16218.1 vs. uniprot
Match: A0A6H5JNP7_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP7_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 4.830e-16
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 3 
Query:  138 HAHICHRAGAQVDQHQPLLHAVTRLPKRLGIRSTVEDGDPFTADRDYRMDILVPEGELRDAPINAYRVKGLLIDVTHADPQ 380
            HA  C R GAQV+ H+PL +A++R    L ++  VE G PFT +R+  MDI++  G L +A    YR KG+L+DVTHADPQ
Sbjct:  403 HARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQ 483
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig81966.16218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JPW7_9PHAE3.650e-1748.24Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDZ4_9PHAE6.960e-1748.24Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEX1_9PHAE7.620e-1748.24Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K198_9PHAE8.910e-1748.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LLI3_9PHAE9.570e-1748.24Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQ53_9PHAE9.720e-1748.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K195_9PHAE1.540e-1648.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMQ2_9PHAE2.110e-1648.24Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KUZ8_9PHAE2.740e-1649.38Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JNP7_9PHAE4.830e-1649.38ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig81966contigH-paniculata_contig81966:42..435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size333
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931027.2711005-UTR-H-paniculata_contig81966:41..1021622931027.2711005-UTR-H-paniculata_contig81966:41..102Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig81966 42..102 +
1691481556.653869-UTR-H-paniculata_contig81966:41..1021691481556.653869-UTR-H-paniculata_contig81966:41..102Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig81966 42..102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931027.2852638-CDS-H-paniculata_contig81966:102..4351622931027.2852638-CDS-H-paniculata_contig81966:102..435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81966 103..435 +
1691481556.6654317-CDS-H-paniculata_contig81966:102..4351691481556.6654317-CDS-H-paniculata_contig81966:102..435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81966 103..435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig81966.16218.1prot_H-paniculata_contig81966.16218.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig81966 103..435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig81966.16218.1

>prot_H-paniculata_contig81966.16218.1 ID=prot_H-paniculata_contig81966.16218.1|Name=mRNA_H-paniculata_contig81966.16218.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MERRFLGIKPYLAARFPCCGAEDVAARPHLPSSGGTGRPTSTAPTRSHAT
PEATRHQEHGGGRRPVHGGPGLPDGHPRPGRRASRCSHQRLPRQGPPDRR
HARRSPVGRAP
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mRNA from alignment at H-paniculata_contig81966:42..435+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig81966.16218.1 ID=mRNA_H-paniculata_contig81966.16218.1|Name=mRNA_H-paniculata_contig81966.16218.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=394bp|location=Sequence derived from alignment at H-paniculata_contig81966:42..435+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCTACGGGCATAGCCCTACGACAACGCCAGGACCGTACCTCCAGCAG
AGTACGTGCTTATGGAGCGGAGGTTTCTTGGCATTAAGCCCTATCTAGCC
GCTCGATTCCCATGCTGCGGAGCGGAGGACGTAGCGGCACGCCCACATTT
GCCATCGAGCGGGGGCACAGGTAGACCAACATCAACCGCTCCTACACGCA
GTCACGCGACTCCCGAAGCGACTAGGCATCAGGAGCACGGTGGAGGACGG
AGACCCGTTCACGGCGGACCGGGACTACCGGATGGACATCCTCGTCCCGG
AAGGAGAGCTTCGAGATGCTCCCATCAACGCCTACCGCGTCAAGGGCCTC
CTGATCGACGTCACGCACGCAGATCCCCAGTTGGCAGGGCACCT
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Coding sequence (CDS) from alignment at H-paniculata_contig81966:42..435+

>mRNA_H-paniculata_contig81966.16218.1 ID=mRNA_H-paniculata_contig81966.16218.1|Name=mRNA_H-paniculata_contig81966.16218.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig81966:42..435+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCGGAGGTTTCTTGGCATTAAGCCCTATCTAGCCGCTCGATTCCC
ATGCTGCGGAGCGGAGGACGTAGCGGCACGCCCACATTTGCCATCGAGCG
GGGGCACAGGTAGACCAACATCAACCGCTCCTACACGCAGTCACGCGACT
CCCGAAGCGACTAGGCATCAGGAGCACGGTGGAGGACGGAGACCCGTTCA
CGGCGGACCGGGACTACCGGATGGACATCCTCGTCCCGGAAGGAGAGCTT
CGAGATGCTCCCATCAACGCCTACCGCGTCAAGGGCCTCCTGATCGACGT
CACGCACGCAGATCCCCAGTTGGCAGGGCACCTATGGAGCGGAGGTTTCT
TGGCATTAAGCCCTATCTAGCCGCTCGATTCCCATGCTGCGGAGCGGAGG
ACGTAGCGGCACGCCCACATTTGCCATCGAGCGGGGGCACAGGTAGACCA
ACATCAACCGCTCCTACACGCAGTCACGCGACTCCCGAAGCGACTAGGCA
TCAGGAGCACGGTGGAGGACGGAGACCCGTTCACGGCGGACCGGGACTAC
CGGATGGACATCCTCGTCCCGGAAGGAGAGCTTCGAGATGCTCCCATCAA
CGCCTACCGCGTCAAGGGCCTCCTGATCGACGTCACGCACGCAGATCCCC
AGTTGGCAGGGCACCT
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