mRNA_H-paniculata_contig81957.16215.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig81957.16215.1
Unique NamemRNA_H-paniculata_contig81957.16215.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig81957.16215.1 vs. uniprot
Match: A0A6H5JFT6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT6_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 6.520e-14
Identity = 38/86 (44.19%), Postives = 54/86 (62.79%), Query Frame = -3 
Query:    3 IAMLGPNEGGQIAHALVPEHVFWRDKEFPNCTVQEVGPEPTTYAAARSSKYADVWEKSMEAEFDGLVTAGTFSVISEVPEGHNVVE 260
            +A LGP    +I  AL+ E       E P   +Q+V  EP +Y  AR SKY+ +W+K+M AEF+GL+ AGTF++  +VP G NVV+
Sbjct:    1 MATLGPIPASEIIEALLVEQRASDAMELPKVLIQDVETEPGSYKEARQSKYSSIWDKTMSAEFEGLLRAGTFALAVKVPIGCNVVD 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig81957.16215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JFT6_9PHAE6.520e-1444.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig81957contigH-paniculata_contig81957:12..426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size417
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931027.0535197-CDS-H-paniculata_contig81957:11..3291622931027.0535197-CDS-H-paniculata_contig81957:11..329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81957 12..329 +
1691481556.5729-CDS-H-paniculata_contig81957:11..3291691481556.5729-CDS-H-paniculata_contig81957:11..329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81957 12..329 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931027.0777714-UTR-H-paniculata_contig81957:329..4261622931027.0777714-UTR-H-paniculata_contig81957:329..426Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig81957 330..426 +
1691481556.5855436-UTR-H-paniculata_contig81957:329..4261691481556.5855436-UTR-H-paniculata_contig81957:329..426Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig81957 330..426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig81957.16215.1prot_H-paniculata_contig81957.16215.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig81957 12..329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig81957.16215.1

>prot_H-paniculata_contig81957.16215.1 ID=prot_H-paniculata_contig81957.16215.1|Name=mRNA_H-paniculata_contig81957.16215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
DSTTLCPSGTSEITLKVPAVTNPSNSASIDFSHTSAYLEDRAAAYVVGSG
PTSCTVQFGNSLSRQNTCSGTSACAICPPSLGPNIAIKLEGPCDCCDTIV
CPRII*
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mRNA from alignment at H-paniculata_contig81957:12..426+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig81957.16215.1 ID=mRNA_H-paniculata_contig81957.16215.1|Name=mRNA_H-paniculata_contig81957.16215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=415bp|location=Sequence derived from alignment at H-paniculata_contig81957:12..426+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTCTACCACATTGTGTCCTTCTGGTACTTCTGAAATTACACTAAAAGT
GCCTGCAGTTACCAATCCGTCAAACTCTGCTTCCATCGATTTTTCCCACA
CATCGGCATATTTGGAAGATCGTGCCGCAGCATATGTTGTCGGTTCAGGT
CCTACCTCCTGTACTGTGCAGTTTGGGAACTCCTTGTCCCGCCAAAATAC
GTGTTCTGGTACTAGTGCATGCGCTATTTGTCCTCCTTCGTTAGGTCCTA
ACATAGCAATTAAACTAGAAGGTCCTTGTGACTGCTGCGATACCATCGTC
TGTCCCCGAATAATCTGAGTTTGACTCCTTGTTCGGCCCTCCCTGACCTC
GGCTCCGTGTTGTGGATCGGACATGTGTGCCCCTAATTGGTGAGCCGCTG
TCCTTGCCGCTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig81957:12..426+

>mRNA_H-paniculata_contig81957.16215.1 ID=mRNA_H-paniculata_contig81957.16215.1|Name=mRNA_H-paniculata_contig81957.16215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig81957:12..426+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTCTACCACATTGTGTCCTTCTGGTACTTCTGAAATTACACTAAAAGT
GCCTGCAGTTACCAATCCGTCAAACTCTGCTTCCATCGATTTTTCCCACA
CATCGGCATATTTGGAAGATCGTGCCGCAGCATATGTTGTCGGTTCAGGT
CCTACCTCCTGTACTGTGCAGTTTGGGAACTCCTTGTCCCGCCAAAATAC
GTGTTCTGGTACTAGTGCATGCGCTATTTGTCCTCCTTCGTTAGGTCCTA
ACATAGCAATTAAACTAGAAGGTCCTTGTGACTGCTGCGATACCATCGTC
TGTCCCCGAATAATCTGAGATTCTACCACATTGTGTCCTTCTGGTACTTC
TGAAATTACACTAAAAGTGCCTGCAGTTACCAATCCGTCAAACTCTGCTT
CCATCGATTTTTCCCACACATCGGCATATTTGGAAGATCGTGCCGCAGCA
TATGTTGTCGGTTCAGGTCCTACCTCCTGTACTGTGCAGTTTGGGAACTC
CTTGTCCCGCCAAAATACGTGTTCTGGTACTAGTGCATGCGCTATTTGTC
CTCCTTCGTTAGGTCCTAACATAGCAATTAAACTAGAAGGTCCTTGTGAC
TGCTGCGATACCATCGTCTGTCCCCGAATAATCTGA
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