mRNA_H-paniculata_contig8194.16213.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8194.16213.1
Unique NamemRNA_H-paniculata_contig8194.16213.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8194.16213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8194contigH-paniculata_contig8194:545..1211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size654
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8194.16213.1prot_H-paniculata_contig8194.16213.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8194 789..1176 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931026.8129156-UTR-H-paniculata_contig8194:544..7881622931026.8129156-UTR-H-paniculata_contig8194:544..788Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8194 545..788 -
1691481556.4665-UTR-H-paniculata_contig8194:544..7881691481556.4665-UTR-H-paniculata_contig8194:544..788Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8194 545..788 -
1622931026.8643608-UTR-H-paniculata_contig8194:1176..12111622931026.8643608-UTR-H-paniculata_contig8194:1176..1211Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8194 1177..1211 -
1691481556.4994302-UTR-H-paniculata_contig8194:1176..12111691481556.4994302-UTR-H-paniculata_contig8194:1176..1211Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8194 1177..1211 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931026.8261244-CDS-H-paniculata_contig8194:788..9681622931026.8261244-CDS-H-paniculata_contig8194:788..968Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8194 789..968 -
1691481556.4775465-CDS-H-paniculata_contig8194:788..9681691481556.4775465-CDS-H-paniculata_contig8194:788..968Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8194 789..968 -
1622931026.8430734-CDS-H-paniculata_contig8194:981..11761622931026.8430734-CDS-H-paniculata_contig8194:981..1176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8194 982..1176 -
1691481556.4875534-CDS-H-paniculata_contig8194:981..11761691481556.4875534-CDS-H-paniculata_contig8194:981..1176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8194 982..1176 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8194.16213.1

>prot_H-paniculata_contig8194.16213.1 ID=prot_H-paniculata_contig8194.16213.1|Name=mRNA_H-paniculata_contig8194.16213.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MEESSSAANQLLRSVGKFDGTDFVPWRRTLRATAILIFPEISRILDGQLR
SETTYRARRARGRTTHLSPGARGRPILKTIIHPGGALGAGGDGGGTDEPS
AEDSSATFQATDEFVINNQAEFDA*
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mRNA from alignment at H-paniculata_contig8194:545..1211-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8194.16213.1 ID=mRNA_H-paniculata_contig8194.16213.1|Name=mRNA_H-paniculata_contig8194.16213.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=667bp|location=Sequence derived from alignment at H-paniculata_contig8194:545..1211- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAGGACAACACGAGCTGGACATCACTGTTTACCATGGAAGAGTCATCA
TCAGCAGCTAACCAGCTCCTCCGCAGCGTCGGCAAGTTCGACGGCACCGA
TTTCGTGCCATGGCGAAGAACTCTTCGTGCAACTGCCATCCTCATCTTTC
CAGAAATCTCTAGAATTCTGGATGGCCAACTTCGATCCGAGACAACGTAT
CGGGCACGGCGAGCTCGTGGGAGAACCACGGCTCGCTTTGAAGCACCTGT
CACCCGGAGCTCGGGGCAGGCCCATACTTAAGACGATCATCCACCCAGGA
GGCGCGCTGGGCGCCGGCGGTGACGGCGGCGGAACGGACGAACCGTCCGC
CGAAGATTCGTCGGCGACATTCCAGGCTACCGATGAATTTGTTATTAACA
ACCAGGCCGAGTTCGATGCGTGAGACGGCCTGAACCAGCAGCTTTACAGT
ATCCTGCTCCTGTCCACCAAGGGGGCTGCAAATAATTTCCTCGTTCGATT
CGGGGGTAGACCCGAGGCTGGACAACTACCCAACGGTAAGGCGGCCTGGA
CAGCAATGTGCGAGAAATATCTTGAATCGTCCATGCAGCGCCGCCGTCTA
CTTATGCGCCAGCTGGACAGCAAGGCAATGGTGCCCAATCAAGACCCTGA
TGAGTGTCTGACCGAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig8194:545..1211-

>mRNA_H-paniculata_contig8194.16213.1 ID=mRNA_H-paniculata_contig8194.16213.1|Name=mRNA_H-paniculata_contig8194.16213.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig8194:545..1211- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGAGTCATCATCAGCAGCTAACCAGCTCCTCCGCAGCGTCGGCAA
GTTCGACGGCACCGATTTCGTGCCATGGCGAAGAACTCTTCGTGCAACTG
CCATCCTCATCTTTCCAGAAATCTCTAGAATTCTGGATGGCCAACTTCGA
TCCGAGACAACGTATCGGGCACGGCGAGCTCGTGGGAGAACCACGATGGA
AGAGTCATCATCAGCAGCTAACCAGCTCCTCCGCAGCGTCGGCAAGTTCG
ACGGCACCGATTTCGTGCCATGGCGAAGAACTCTTCGTGCAACTGCCATC
CTCATCTTTCCAGAAATCTCTAGAATTCTGGATGGCCAACTTCGATCCGA
GACAACGTATCGGGCACGGCGAGCTCGTGGGAGAACCACGCACCTGTCAC
CCGGAGCTCGGGGCAGGCCCATACTTAAGACGATCATCCACCCAGGAGGC
GCGCTGGGCGCCGGCGGTGACGGCGGCGGAACGGACGAACCGTCCGCCGA
AGATTCGTCGGCGACATTCCAGGCTACCGATGAATTTGTTATTAACAACC
AGGCCGAGTTCGATGCGTGACACCTGTCACCCGGAGCTCGGGGCAGGCCC
ATACTTAAGACGATCATCCACCCAGGAGGCGCGCTGGGCGCCGGCGGTGA
CGGCGGCGGAACGGACGAACCGTCCGCCGAAGATTCGTCGGCGACATTCC
AGGCTACCGATGAATTTGTTATTAACAACCAGGCCGAGTTCGATGCGTGA
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