mRNA_H-paniculata_contig8179.16201.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8179.16201.1
Unique NamemRNA_H-paniculata_contig8179.16201.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8179.16201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8179contigH-paniculata_contig8179:4969..6460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size574
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8179.16201.1prot_H-paniculata_contig8179.16201.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8179 4981..6357 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931025.0974243-UTR-H-paniculata_contig8179:4968..49801622931025.0974243-UTR-H-paniculata_contig8179:4968..4980Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8179 4969..4980 +
1691481555.808616-UTR-H-paniculata_contig8179:4968..49801691481555.808616-UTR-H-paniculata_contig8179:4968..4980Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8179 4969..4980 +
1622931025.1516798-UTR-H-paniculata_contig8179:6357..64601622931025.1516798-UTR-H-paniculata_contig8179:6357..6460Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8179 6358..6460 +
1691481555.8331418-UTR-H-paniculata_contig8179:6357..64601691481555.8331418-UTR-H-paniculata_contig8179:6357..6460Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8179 6358..6460 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931025.118529-CDS-H-paniculata_contig8179:4980..50761622931025.118529-CDS-H-paniculata_contig8179:4980..5076Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8179 4981..5076 +
1691481555.8170931-CDS-H-paniculata_contig8179:4980..50761691481555.8170931-CDS-H-paniculata_contig8179:4980..5076Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8179 4981..5076 +
1622931025.1329715-CDS-H-paniculata_contig8179:5994..63571622931025.1329715-CDS-H-paniculata_contig8179:5994..6357Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8179 5995..6357 +
1691481555.825012-CDS-H-paniculata_contig8179:5994..63571691481555.825012-CDS-H-paniculata_contig8179:5994..6357Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8179 5995..6357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8179.16201.1

>prot_H-paniculata_contig8179.16201.1 ID=prot_H-paniculata_contig8179.16201.1|Name=mRNA_H-paniculata_contig8179.16201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
MIRRLYFHPWMVRVMRPLLIGGVLSKTLFPLGNIGHVHRIFSIHLVLVSM
PGWDWMSCRRDGRGVRTYSCTTRSASCTLSSHNGIGVTNPQAIASSRKSE
YNFPTGRCALNSWFTLYLVSNSHVPLLQTLVRKGIFSCVLSVIDKDFEGH
VE*
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mRNA from alignment at H-paniculata_contig8179:4969..6460+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8179.16201.1 ID=mRNA_H-paniculata_contig8179.16201.1|Name=mRNA_H-paniculata_contig8179.16201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1492bp|location=Sequence derived from alignment at H-paniculata_contig8179:4969..6460+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTTGCCCGTGCATGATCCGTCGATTGTACTTCCATCCATGGATGGTCCG
TGTGATGAGACCACTTCTGATTGGGGGAGTTCTTTCGAAAACCCTTTTTC
CCTTGGGAGTCACTTTTGTTGGGGGAAAAAACAGTACCCAAGAAAACTCC
ATATATATGATGCGTGATGTGTAAGAGGTGTAATGAAACGTCCGTGTTTA
TTTTTGTTTGCGAGAGATGTTATTGCATGCCACGGGTGCGTGTTGCGTGG
TGTATGATGTGGTGTGGTGATTGGCTACGATCGTGGTCGAGGGACCCTTG
ATATTCGTGCAGCAACCGTGAGCGACAAATACAGGGGTTTCGGGCGTTTG
TCCCTCCCCTCCAAAATGACCGATAAAATGGCGCGGAAATTTCGCCTCCT
TGGGCCATCCGAGGAGGTCTCGCATAAATTAAGGTTGTTTTCTCTCTAAA
AACTTCCCGATAACTTGTATAAGGTAGTGTTTTTTCGGGGCAAAATCGCT
CAAGAAGAAGTTCTCTCGAAAGAGCTCCGCCCACCCTAAGAAGTGGTCTC
AGCGAGGGGACCCGTAACTTTTTTTCTGCAGCCGTGTCTCTGATGATGAC
CCCTACTGATTAAGATTCGCTAGTAAGCCTATAGAACCATAGCCATGCCC
AGCCACCCCCCGTCGTTCCCCCTCCATTGATCTAATTGTACTGATAAGTG
TATGCAACTGCAGATTGAAGTCATCCACATAATCTCAATATCGGTACAAT
GGAGTCATTATATGGGGCTCAGAGCAAAAGTTCAACTGATCGTGGCGGGA
TATTTTTCCTACAAATAATGAGAGTTTCAGTTAGCAAAATGGAGTGTTGT
TTTCAACTTTCATGGTGTCAGTCGTTCATATGACGACTATTATTGTATAT
TTTATCAACAATAAATATACGAGTGATACAGTGATACTCCCCTATGAAGA
TTGCTGTAGCCCGTGTCGTGCGTGATCGAAGAGGCGCGATAAGTTCCGGT
AGTCGGTCATGATATTATGGGGTCAGAATATTGGTCATGTGCATAGGATA
TTTTCGATTCACCTGGTGCTGGTGAGCATGCCTGGGTGGGACTGGATGAG
TTGCAGGCGTGATGGTAGAGGAGTACGTACTTATTCATGCACAACTCGTT
CAGCGTCATGTACTCTAAGCTCTCACAATGGAATTGGGGTAACTAATCCG
CAGGCCATAGCTAGCAGTCGGAAATCTGAGTACAATTTTCCCACGGGGAG
ATGTGCATTGAATTCATGGTTTACTCTCTATTTGGTGTCCAACAGTCATG
TTCCTCTGCTGCAGACGCTGGTCCGTAAAGGCATCTTTTCGTGTGTCCTG
TCTGTTATTGACAAAGATTTCGAAGGGCACGTTGAATAATGAGTAAGTAG
CATTCGACATGGGAGGGGCATATGACATGCTCCCCCAGGTCAAATCGGGT
TACTAATTTACAGTGTCGATGCAACATAAGTGTGAGTACGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig8179:4969..6460+

>mRNA_H-paniculata_contig8179.16201.1 ID=mRNA_H-paniculata_contig8179.16201.1|Name=mRNA_H-paniculata_contig8179.16201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig8179:4969..6460+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCCGTCGATTGTACTTCCATCCATGGATGGTCCGTGTGATGAGACC
ACTTCTGATTGGGGGAGTTCTTTCGAAAACCCTTTTTCCCTTGGGAATGA
TCCGTCGATTGTACTTCCATCCATGGATGGTCCGTGTGATGAGACCACTT
CTGATTGGGGGAGTTCTTTCGAAAACCCTTTTTCCCTTGGGAAATATTGG
TCATGTGCATAGGATATTTTCGATTCACCTGGTGCTGGTGAGCATGCCTG
GGTGGGACTGGATGAGTTGCAGGCGTGATGGTAGAGGAGTACGTACTTAT
TCATGCACAACTCGTTCAGCGTCATGTACTCTAAGCTCTCACAATGGAAT
TGGGGTAACTAATCCGCAGGCCATAGCTAGCAGTCGGAAATCTGAGTACA
ATTTTCCCACGGGGAGATGTGCATTGAATTCATGGTTTACTCTCTATTTG
GTGTCCAACAGTCATGTTCCTCTGCTGCAGACGCTGGTCCGTAAAGGCAT
CTTTTCGTGTGTCCTGTCTGTTATTGACAAAGATTTCGAAGGGCACGTTG
AATAAAATATTGGTCATGTGCATAGGATATTTTCGATTCACCTGGTGCTG
GTGAGCATGCCTGGGTGGGACTGGATGAGTTGCAGGCGTGATGGTAGAGG
AGTACGTACTTATTCATGCACAACTCGTTCAGCGTCATGTACTCTAAGCT
CTCACAATGGAATTGGGGTAACTAATCCGCAGGCCATAGCTAGCAGTCGG
AAATCTGAGTACAATTTTCCCACGGGGAGATGTGCATTGAATTCATGGTT
TACTCTCTATTTGGTGTCCAACAGTCATGTTCCTCTGCTGCAGACGCTGG
TCCGTAAAGGCATCTTTTCGTGTGTCCTGTCTGTTATTGACAAAGATTTC
GAAGGGCACGTTGAATAA
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