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Homology
BLAST of mRNA_H-paniculata_contig8175.16199.1 vs. uniprot
Match: A0A6H5KGT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT0_9PHAE) HSP 1 Score: 221 bits (564), Expect = 1.440e-62 Identity = 133/228 (58.33%), Postives = 163/228 (71.49%), Query Frame = 1
Query: 4 KKDIQKLRGLHAKRVSKLEALLREEGGRLAEARREIACCKANLAGDAGKFQRWTEEQRDQSKNVLEELARIQ--------LEAEAREREALAMGRLRKVMEEARLERAEGVEIRRQLREALGELESNRSVQARKARTDIQLQRTAEIAQQEVAMLEAERGRWHKERISMEAALEKLTRLVYGPPRINNNSQNSSXXXXXXXXXVTTAANTPTPRTKQAASPWKPSGFI 663
++DI KLRGLHA+RV +LEALL+EE LA+ARRE+A CKA +AG+A +FQRWTE R++S +L+ELA IQ EA+ARERE LAMGRLRKVMEEARLERAEG E++RQLREAL ELES+R+ QAR+AR ++QLQR AEIAQQEVAM+E+ER RW++ER SME A+E+LTRLVYG S V+ + T P PWKP G I
Sbjct: 952 RRDIDKLRGLHARRVKRLEALLKEERDNLADARRELASCKATMAGEAAEFQRWTENHRNESTKLLKELAVIQKKVDRAVATEAQAREREGLAMGRLRKVMEEARLERAEGAEVKRQLREALAELESDRNAQARRARANLQLQRAAEIAQQEVAMVESERARWYEERRSMETAMERLTRLVYGTTAAAPGGNTSGDGNASAAAAVSKSTWTKAP----TGFPWKPPGCI 1175
BLAST of mRNA_H-paniculata_contig8175.16199.1 vs. uniprot
Match: D8LEQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEQ4_ECTSI) HSP 1 Score: 202 bits (514), Expect = 2.120e-60 Identity = 118/182 (64.84%), Postives = 144/182 (79.12%), Query Frame = 1
Query: 4 KKDIQKLRGLHAKRVSKLEALLREEGGRLAEARREIACCKANLAGDAGKFQRWTEEQRDQSKNVLEELARIQ--------LEAEAREREALAMGRLRKVMEEARLERAEGVEIRRQLREALGELESNRSVQARKARTDIQLQRTAEIAQQEVAMLEAERGRWHKERISMEAALEKLTRLVYG 525
+KDI KLRGLHA+RV +LEALL+EEG LA+ARREIA CKA +AGDA +FQRWTE R++S +L+ELA IQ EA+ARERE LAMGRLRKVME G E++RQLREAL ELES+R+ QAR+AR +++LQR AEIAQQEVAM+E+ER RW++ER SME A+E+LTRLVYG
Sbjct: 57 RKDIDKLRGLHARRVKRLEALLKEEGDNLADARREIASCKAAMAGDAAEFQRWTENHRNESTKLLKELAVIQKKVDRAVATEAQAREREGLAMGRLRKVME--------GAEVKRQLREALAELESDRNAQARRARANLKLQRAAEIAQQEVAMVESERARWYEERRSMETAMERLTRLVYG 230
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 744 |
| Cds size | 744 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8175.16199.1 >prot_H-paniculata_contig8175.16199.1 ID=prot_H-paniculata_contig8175.16199.1|Name=mRNA_H-paniculata_contig8175.16199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=248bp
MKKDIQKLRGLHAKRVSKLEALLREEGGRLAEARREIACCKANLAGDAGK
FQRWTEEQRDQSKNVLEELARIQLEAEAREREALAMGRLRKVMEEARLER
AEGVEIRRQLREALGELESNRSVQARKARTDIQLQRTAEIAQQEVAMLEA
ERGRWHKERISMEAALEKLTRLVYGPPRINNNSQNSSNNANMTTNTVTTA
ANTPTPRTKQAASPWKPSGFIKASTFKRAQGTAAVGGGCKANVPGVGD back to topmRNA from alignment at H-paniculata_contig8175:1250..6330- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig8175.16199.1 ID=mRNA_H-paniculata_contig8175.16199.1|Name=mRNA_H-paniculata_contig8175.16199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5081bp|location=Sequence derived from alignment at H-paniculata_contig8175:1250..6330- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGAAGGACATTCAAAAGCTAAGGGGATTGCACGCCAAGAGGGTTTC
CAAGCTGGAGGCTTTGTTGCGGGAGGAGGGGGGGCGCTTGGCCGAGGCCC
GGCGAGAGATAGGTGAAACTTGTTGTTGTTGTTGTTGTTGTTGATGGTGA
TGGGGATGATGACGCTTACAAGATGACGCTTATAAGATGACGATTATAAC
GGAAAAGATGGTGGTGGTAGTGGTGGTGATGATGATGTTTTTTTCTCGTT
TGTGACAGTGTTGAAATCATTTATTAAGAAAAACGTTTTCCCCGGCTTCT
CATTCTATTCCCCTTTTTTTCGAAAAAAAAAATGTTCTTCTTTTTCTCAG
CGTGCTGCAAGGCTAATCTCGCGGGCGATGCCGGAAAGTTCCAGCGCTGG
ACCGAAGAACAGCGGGATCAATCCAAGAACGTCCTGGAAGAGCTCGCACG
AATACAGGTACACAGTACTCAATCACGACGTAGAGCACGTCTCGTCGAGA
TGAATTGATGTATTCTCAGGGATGTTCGATTCTCTTTCTAACGCTTGCAT
TTGGTTGCTACCCACAAAGTTTGTGAAAGTGTCGGGGTTCCTCAGCCAAT
CACAGGCCCTAGAAGAATAGAGTCTCGGCTGGAATCGATTAATCCATATA
CCTCGATTCATTAGAATGTTTGCAAAGCAAACATAGTATGGACAATATTT
CAAGTAGTTTTGGAGTGGTAGCGCGGTCACTCACTGGCTGAGTTTGAACC
CTCATCTAACGCAGGGTCGTACGTCTGCTCACGCGTAGCTGAGACGGCGC
TGCAGCTCATGACCCCAGCGAGATATGCGTAATGTTTGGGCAGTGGTCGT
TAGTTCACCGAAAACTAGTCATGAAACAAGAAATGGAATGAATTTCCGAT
GCAAAACTCAGCCACTCGGTACTAGAAAACGGGTAATTGTGCGCAAGCAG
ATCTGGAACATAGCACCTTGAGAGGGCTTGAGCTGGGCTAGGAAGCGACG
CGCTGCCACTACATGACTACTGGCTGATAGATTGAATAAACCATATTCGT
CATTACGCAAATACCCTGTTACTCTTGAAGGTTATGGGGTGACTACCTCC
AATGACGTTTCTATTTGAGGGACCGAGTATACCTGAATCTTGATGCGGCA
ACGATGGGACTAGTAGAAACGATACGCGATAAGCAGTGTCATGGAATTTG
AGTTTTTTTCTCTAATTCCTGAGGATTTAAAGACAACCAACGAAATAGGC
ATCACTTGCAACGAGTACACGGTCTCCCGTCCTGACACAGCTGGTACCTC
CATTTTTCCACAAGGGTACGTACTTTTTTCTTTCTTTTTTTTAACCCCCG
GAAGGCCAAGGCAAAACCCTTTCCGCTGCTTCCACTCTTCGGAAGATTAC
TGAGTGTCTGCATTTCCTAAGGGTACGTACTTACCCTCTCTTTAATATTT
AAAAACATTGGGTTGTTCATGAAAGCAAACGAATGGTTATGTACAGTAGA
GTTGGGGAGTACGAAAGCGAGAATTTTACGGTGTGGTCACATCTTGCATG
TGCCTGTGTTATTGAACTAGACTCTTTTTGTTGTGTAATATTGGACTTCA
CTCTGTCACACATAAAGTATTTATGTAGAGGGTCTAATATGTGAAATACG
TCGAAAATTAGAGGCTAGATTTCATGAAAGCAGGTGCAAATGAATGACCA
CTCACATTGATGGACGTACACGTGGATACAAATGTATATACTGTATGGAG
TATCTATATACGTGTCATCTTACAGCAGCTGTCGAAATCGAGGGTAATCC
CGCAGACAGTGTAATAGTCATAACATAAAAATTGAGACAATCAGAAACGT
ACATAACATGGATGAAAGTGGAGCTCTAGAGCTGATGAAAAAAACTCAGA
GATGCGTAGCTCCTCTAGAGAGGTATCTTATACGGGCGGGCCGGCGGAGT
CGTCCTGCAATAGTAGGGGAGGTCGCTTCTGGAGCATGACACTTCTGAGA
GGATGACACAATTATTACTAGCGCATCGCGCGGCCATGGTCCACTCCTGG
TCCATACCTATGGATGAAAATTTTTTGTCTTGAACTTATGTTTTTGCAAT
AGTTATAATATCTCAAATGAGGAGTATGCCGCGCGCTGTCAGTAGGAGGT
CTTTGGTGTCGGTTTTTTTTCTTGCGTGTGTTCTTATTCGCATCTTTACG
TGGACTTTTTTTGCTGGCTTTAGTGTACAAATGTTGTCGATTATCGATCC
CCAAGAGGTATTGAGACAGACAGTAAGTAGCCTGCTAGATCCCTACAAGA
GTTGTCATTACTCCCCCTCGTGTTACCGGTGTAGTGCAAAAATTCGGGTG
TCCCTTGTCGAAGGACAAGACGCCGCAGAGACTGGAAATAGAAAGCTGTT
GACCCGATGGATAAGGGTAATTCGTTGCCGGACGCTCAGGTGATGCAAGG
CTCAATTGGTACACACACGATTGGCCTAGGTCCCAGTCTCGCAGACCTTG
TGTAAGTGGATAGATGATGGAGATGGGGAGAACTGAATTAGATGGGACCA
ATCTCTCATAGGTGAGTAACTGTGTGTGCTCGTGTGTCTAAATTGGCCCG
CAGAACAAAGTGGGAGCCGCTGTCAAGCTGGAAGCGGAAGCGCGAGAGCG
GGAAGCGTTGGCCATGGGCCGCTTGAGGAAGGTTATGGAGGTGCGTTTGT
GCGTTGTGGATGTTGGAATACTTGAGCTTCTATGCGACACATCGGCTGGG
GTTGTTACGGGTAAGGGAGAAGTTAGACAATCAATCGTAAATGTGATGTT
ATCTAGGCGGATACACTTACGTCATAGGAACAGCATGCCAGCTACTAGGT
ACTCGTTTTTCGGGAATGGATGTACAGCGTACGAGGCACTCCTTTCTTGC
CACGGCAGTTTGTCTTTCTCTTCTTATGATCTTGTGTGTCTGTCTGTTTG
TCCCTCTATCGATCTATTGGTCTCTATATTTGTCTGTTGCCTTCTCGTGT
GTCTGTCTCTCTGTATTTGTCTTTCTCCGCATTTCTGTGTCTCTTAGGAA
GCACGCCTGGAGCGTGCAGAGGGTGTCGAGATTCGTCGTCAGCTGAGAGA
AGCGTTGGGAGAGCTAGAATCCAACCGTAGCGTGCAGGCACGCAAAGCTA
GAACTGACATCCAGGTACGTAAAACATTCGGGATGGCCCTCGAGTGGTAC
AGCAGCATCTCCACGCAATTTGTAATGTGTAATGTGTAATAATTTTGCGG
AAAATGTTTTACCCTAGTCTGTGGCGCAAAATCCATGGTCGCTGCGGCAC
TGTTTCCTGATGTTGTGTTGTTTCCTGAGACAGCGCGCGTGATCCACATA
TTTTTGCTGCTGCCAGTCGAATGTGCTAGGTGGTGCTATATACATACAGT
ACAGTGCAGAAACATACTTGGATGTCAATGCCAACGTGCCGAACCGCCCC
CCGCCCCCCCCCGCGCGTGTGTGTGTGTGTTTGTTCTTCTTTACTTGTTG
TAATAATCATCAGCTTCAACGCACAGCGGAGATTGCCCAGCAAGAGGTGG
CTATGCTGGAAGCGGAAAGGGGCAGGTGACAGGAAAACAAACATATGCGT
CAAGAAATGTTAGGGCCCTACATAACCGGCACTATCAATGAATCTTAGGC
GTACATTGGAACAAACGGCCATTTTTTCAGTCATAATTGATTGGTATGTT
CTTAGTTCTCGTCTGTCTGTCACACGCTCAGTCAGATTTGTGTGGTTCTT
ATTAGCTAGTAGCAGCTGTCATTAACCAATTTGCTTTCGCCTCTCTCCAG
GATAAAACTGATCTCAATCATGTTGTCATGTTTTTGTGACAGAGAAGGTT
GAACTTAGTGTTGCACGTGACGGACACCGGCTCCGAGCTGCTTCGCGGTA
GCGTTGGTTCTGTTCGATTTTTCCTTCCCTGCAACCAGTTCGTGGTCGGT
TCTGTCTGATTCAAGCCGGTCAATGGTCAGTTTTTCTGACAGACTTTGCC
TTGTGGTCATGCGAACAGCGTTGGGAAAGTAAAAGGCAACGAAAGAGAAA
ACAATCGGCACCGTCAGGTAAAATAACGCCCTTTTCTATGTATATATATC
ATTCAATGTAATAGCCTGAGCATACTTTATTGTACTTCATCGGTAGATGC
ACTGAAACACTGACCATGCCATACTGTATGGACGTGAAGTCTTCACTCAA
CAAGTACCCAACGATGCCCCCGACGAACTGCATGTCTAGGCCTACAAAAC
ATAACAGATAAGGCCAGACTTGAACAGTAGGCTGAACACGACACAGCAAA
GTTAGCTTGTAACGCTGCATGAGCCAGACGTGAACTCTTGCGGCATTTTC
TACGTTTTATTTCATATAGATGCCGCGTCTGTTTTTTTAACTTGACGCTA
ATATTGGGCGTTCTCACAGGCCAATATAAGCCATTCCCCCAACACACACA
GTATGTGACTGTCCAGAACAATGTTTTGTTTGCACTTCCAGAACCCTCGC
TTCTTCAAGCTGAACAGCTATAGTGGGTGTCCCGTCCCGCAATAAGCCAG
TCAAAATGATCTGTCACACTTTCAAAATGTGGTTTTTAGTTGGGATCGGT
CACCTCGAATCGCGTTCCGTCGCGGAACAGTGTTTTTCACTAGCGGATTG
CATTGGTCGTTATCTAAAAACAAGCGGAGTATAAACCCTAGTGTTGAATG
CTATAGTGTGTACGTGTTATTTAGGACATATTCTCGGCAACCATAACGTC
ACCCGCCCCCCGAACCCCCGTCATACCCTGCTCCCCACTACGACAAAGGT
GGCACAAGGAGAGGATATCGATGGAAGCAGCATTGGAGAAGCTGACCAGA
TTGGTATACGGCCCACCCCGCATCAACAACAACAGCCAGAATTCCAGCAA
TAACGCCAACATGACTACAAACACCGTCACCACAGCCGCCAATACCCCAA
CCCCGAGAACAAAACAGGCCGCATCCCCTTGGAAACCCAGCGGGTTCATC
AAGGCGTCAACCTTTAAACGCGCACAAGGAACGGCAGCGGTAGGGGGGGG
GTGCAAGGCAAACGTCCCCGGAGTAGGGGAT back to topCoding sequence (CDS) from alignment at H-paniculata_contig8175:1250..6330- >mRNA_H-paniculata_contig8175.16199.1 ID=mRNA_H-paniculata_contig8175.16199.1|Name=mRNA_H-paniculata_contig8175.16199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1488bp|location=Sequence derived from alignment at H-paniculata_contig8175:1250..6330- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGAAGGACATTCAAAAGCTAAGGGGATTGCACGCCAAGAGGGTTTC
CAAGCTGGAGGCTTTGTTGCGGGAGGAGGGGGGGCGCTTGGCCGAGGCCC
GGCGAGAGATAGATGAAGAAGGACATTCAAAAGCTAAGGGGATTGCACGC
CAAGAGGGTTTCCAAGCTGGAGGCTTTGTTGCGGGAGGAGGGGGGGCGCT
TGGCCGAGGCCCGGCGAGAGATAGCGTGCTGCAAGGCTAATCTCGCGGGC
GATGCCGGAAAGTTCCAGCGCTGGACCGAAGAACAGCGGGATCAATCCAA
GAACGTCCTGGAAGAGCTCGCACGAATACAGCGTGCTGCAAGGCTAATCT
CGCGGGCGATGCCGGAAAGTTCCAGCGCTGGACCGAAGAACAGCGGGATC
AATCCAAGAACGTCCTGGAAGAGCTCGCACGAATACAGCTGGAAGCGGAA
GCGCGAGAGCGGGAAGCGTTGGCCATGGGCCGCTTGAGGAAGGTTATGGA
GCTGGAAGCGGAAGCGCGAGAGCGGGAAGCGTTGGCCATGGGCCGCTTGA
GGAAGGTTATGGAGGAAGCACGCCTGGAGCGTGCAGAGGGTGTCGAGATT
CGTCGTCAGCTGAGAGAAGCGTTGGGAGAGCTAGAATCCAACCGTAGCGT
GCAGGCACGCAAAGCTAGAACTGACATCCAGGAAGCACGCCTGGAGCGTG
CAGAGGGTGTCGAGATTCGTCGTCAGCTGAGAGAAGCGTTGGGAGAGCTA
GAATCCAACCGTAGCGTGCAGGCACGCAAAGCTAGAACTGACATCCAGCT
TCAACGCACAGCGGAGATTGCCCAGCAAGAGGTGGCTATGCTGGAAGCGG
AAAGGGGCAGCTTCAACGCACAGCGGAGATTGCCCAGCAAGAGGTGGCTA
TGCTGGAAGCGGAAAGGGGCAGGTGGCACAAGGAGAGGATATCGATGGAA
GCAGCATTGGAGAAGCTGACCAGATTGGTATACGGCCCACCCCGCATCAA
CAACAACAGCCAGAATTCCAGCAATAACGCCAACATGACTACAAACACCG
TCACCACAGCCGCCAATACCCCAACCCCGAGAACAAAACAGGCCGCATCC
CCTTGGAAACCCAGCGGGTTCATCAAGGCGTCAACCTTTAAACGCGCACA
AGGAACGGCAGCGGTAGGGGGGGGGTGCAAGGCAAACGTCCCCGGAGTAG
GGGATGTGGCACAAGGAGAGGATATCGATGGAAGCAGCATTGGAGAAGCT
GACCAGATTGGTATACGGCCCACCCCGCATCAACAACAACAGCCAGAATT
CCAGCAATAACGCCAACATGACTACAAACACCGTCACCACAGCCGCCAAT
ACCCCAACCCCGAGAACAAAACAGGCCGCATCCCCTTGGAAACCCAGCGG
GTTCATCAAGGCGTCAACCTTTAAACGCGCACAAGGAACGGCAGCGGTAG
GGGGGGGGTGCAAGGCAAACGTCCCCGGAGTAGGGGAT back to top
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