mRNA_H-paniculata_contig81735.16198.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig81735.16198.1
Unique NamemRNA_H-paniculata_contig81735.16198.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig81735.16198.1 vs. uniprot
Match: A0A517YZY1_9PLAN (Lipoprotein NlpI n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517YZY1_9PLAN)

HSP 1 Score: 100 bits (249), Expect = 1.830e-21
Identity = 56/130 (43.08%), Postives = 79/130 (60.77%), Query Frame = 1
Query:    1 FLDHVHPTIAVHRELAIQLLIKMQQMQIVRRGDQWKSELPS-VIRTIEQQLDSRQMALAERNLAKVLGWAGKREESDRLIRKAASRLPNDAEAQSLSGDAYVRQQDWQAAETAFRAALKIDPNCTRAMEG 387
            FLDHVHPTI  HR+LA+ LL++M++M++ R G  W  E+ + V   ++  +D  + A A  NL+KVL WAGK EE+DRL  +A   L  DA+A   +G A  RQ +   A   +R A++ DP   RA  G
Sbjct:  415 FLDHVHPTIEGHRDLALALLVRMKEMELYRPGPDWNEEIIARVTDRVKSTIDPAEHAQALVNLSKVLSWAGKYEEADRLALRAGEMLSTDADALYQAGSALYRQGNIAGAMEQYRKAVEADPQSARAQFG 544          
BLAST of mRNA_H-paniculata_contig81735.16198.1 vs. uniprot
Match: A0A2E7EGL1_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7EGL1_9PLAN)

HSP 1 Score: 89.4 bits (220), Expect = 1.390e-17
Identity = 52/130 (40.00%), Postives = 73/130 (56.15%), Query Frame = 1
Query:    1 FLDHVHPTIAVHRELAIQLLIKMQQMQIVRRGDQWKSELPSVIRTIEQQLDSRQMALAERNLAKVLGWAGKREESDRLIRKAASRLPNDAEAQSLSGDAYVRQQDWQAAETAFRAALKIDPNCTRAMEGL 390
            FLDHVHP+I +H++L +QL  ++    IV     W+     V   I  Q+D      A RNLAKVL WAGK EE++RL  +A++ +  DAE   LSG+A + +     A   FR A++I PN   A+  L
Sbjct:  416 FLDHVHPSIELHQQLGLQLFDQLVSDDIVDEPLDWEQRKEQVADRIHSQIDGEAHGAALRNLAKVLNWAGKTEEANRLAMEASTLIRGDAETAYLSGNALLAKGKIPEAIERFREAIQISPNHHLALNSL 545          
BLAST of mRNA_H-paniculata_contig81735.16198.1 vs. uniprot
Match: A0A2E5G668_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2E5G668_9BACT)

HSP 1 Score: 85.1 bits (209), Expect = 4.360e-16
Identity = 52/135 (38.52%), Postives = 82/135 (60.74%), Query Frame = 1
Query:    1 FLDHVHPTIAVHRELAIQLLIKMQQMQIVRRGDQWKS-ELPSVIRTIEQQLDSRQMALAERNLAKVLGWAGKREESDRLIRKAASRLPNDAEAQSLSGDAYVRQQDWQAAETAFRAALKIDPNCTRAMEGLGIVL 402
            F+DHVHPT+A +R LA+ L   ++Q QIV   D   S  +  V   I+ ++D + +  A RNL+ +L WAGK+ ES+R++++AA+ L  DAE   + G     + D QAA   +R AL+++P+   A+  LG+ L
Sbjct:  414 FVDHVHPTLAGYRLLALNLFDFLRQHQIVVVSDTVASGAVREVTDKIDSRVDRQALGTALRNLSGMLSWAGKQAESERVLQQAATLLGEDAEIYRIRGIEATGRGDIQAAIGFYRQALQVNPSFPEALNNLGVAL 548          
BLAST of mRNA_H-paniculata_contig81735.16198.1 vs. uniprot
Match: A0A847GWS0_9BACT (Tetratricopeptide repeat protein n=1 Tax=Candidatus Anammoximicrobium sp. TaxID=2699742 RepID=A0A847GWS0_9BACT)

HSP 1 Score: 81.3 bits (199), Expect = 9.440e-15
Identity = 49/119 (41.18%), Postives = 72/119 (60.50%), Query Frame = 1
Query:    1 FLDHVHPTIAVHRELAIQLLIKMQQMQIVRRGDQWKSE-LPSVIRTIEQQLDSRQMALAERNLAKVLGWAGKREESDRLIRKAASRLPNDAEAQSLSGDAYVRQQDWQAAETAFRAALK 354
            FLDHVHPT   +  +A +L  ++ +++ VR    W  +    V   + +++D R  A+A RNLAKVL WAGK  ++DRL  +AA  LP+DAEAQ ++G A +R      A+  F AAL+
Sbjct:  410 FLDHVHPTSEGNARIARELAGELIRIKAVRPQPSWTPDGFERVAERVLERIDPRDHAVALRNLAKVLNWAGKVVDADRLALEAAEHLPDDAEAQRMAGFARLRLDRTAEAKPLFEAALR 528          
BLAST of mRNA_H-paniculata_contig81735.16198.1 vs. uniprot
Match: A0A2E6AK00_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E6AK00_9PLAN)

HSP 1 Score: 77.4 bits (189), Expect = 2.070e-13
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 1
Query:    1 FLDHVHPTIAVHRELAIQLLIKMQQMQIVRRGDQWKS-ELPSVIRTIEQQLDSRQMALAERNLAKVLGWAGKREESDRLIRKAASRLPNDAEAQSLSGDAYVRQQ 312
            FLDHVHPT+  HR LA+ ++ ++    +V+    W S  +  + + +E  +D R    A RNLAKVL WAGK+EE++RL  KA+  L  D E   L+G+A + Q+
Sbjct:  387 FLDHVHPTVEGHRLLALAIIDQLIDQGVVQPSINWNSVAIAKITQQVESGIDERVQGEALRNLAKVLTWAGKKEEANRLALKASELLSGDDETFYLAGNALLEQR 491          
BLAST of mRNA_H-paniculata_contig81735.16198.1 vs. uniprot
Match: A0A350M464_9FLAO (Uncharacterized protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A350M464_9FLAO)

HSP 1 Score: 74.7 bits (182), Expect = 1.720e-12
Identity = 38/98 (38.78%), Postives = 61/98 (62.24%), Query Frame = 1
Query:    1 FLDHVHPTIAVHRELAIQLLIKMQQMQIVRRGDQWKSE-LPSVIRTIEQQLDSRQMALAERNLAKVLGWAGKREESDRLIRKAASRLPNDAEAQSLSG 291
            FLDHVHPTI  +R LA+ ++ +M +  ++ +   W  + +  +   +E  LD +  A+A RNL+KVL WAGK +E++RLI +A + +P+D E     G
Sbjct:  398 FLDHVHPTIEGNRLLALAIIEEMDKEGMLTKATTWNEDKITELTADLENSLDEKNHAMALRNLSKVLSWAGKHDEAERLINEAVATIPDDGETNVQKG 495          
BLAST of mRNA_H-paniculata_contig81735.16198.1 vs. uniprot
Match: A0A0S7ZTZ9_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonas sp. SG8_17 TaxID=1703355 RepID=A0A0S7ZTZ9_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 4.320e-12
Identity = 46/136 (33.82%), Postives = 70/136 (51.47%), Query Frame = 1
Query:    1 FLDHVHPTIAVHRELAIQLLIKMQQMQIVRRGDQWKSE-LPSVIRTIEQQLDSRQMALAERNLAKVLGWAGKREESDRLIRKAASRLPNDAEAQSLSGDAYVRQQDWQAAETAFRAALKIDPNCTRAMEGLGIVLS 405
            FLDHVHPTI  +R LA+ ++ +M    IV     W +  +  +   +E  LD +  A+A +NL+KVL WAGK +E++RL+  A +    D E          R  D +AA   +R A ++ P         G++LS
Sbjct:  397 FLDHVHPTIEGNRLLALAIVQEMTHEGIVSPAATWNAAAIAEISERLENSLDEQAHAMALKNLSKVLLWAGKHDEAERLLNLAVAATSEDGETHFQKATLLRRAGDTEAALFHYREAARLAPLNPAVHHAFGVLLS 532          
BLAST of mRNA_H-paniculata_contig81735.16198.1 vs. uniprot
Match: A0A5B9M939_9BACT (Tetratricopeptide repeat protein n=2 Tax=Stieleria maiorica TaxID=2795974 RepID=A0A5B9M939_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 2.070e-11
Identity = 48/135 (35.56%), Postives = 72/135 (53.33%), Query Frame = 1
Query:    1 FLDHVHPTIAVHRELAIQLLIKMQQMQIVRRGDQWKSELPSVIRTIEQQLDSRQMALAERNLAKVLGWAGKREESDRLIRKAASRLPNDAEAQSLSGDAYVRQQDWQAAETAFRAALKIDPNCTRAMEGLGIVLS 405
            FLDHVHPTI VHRE+A+ +L  +   +IV        ++ +  +TI  +LD +   +A RNLAK+  WAGK EE+ R    A   LP D E++ +  D  V +    AA   +    +I  +  RA +  G +L+
Sbjct:  565 FLDHVHPTIDVHREIALVILSALVDREIVPEVPS-PDQIAAATQTIHGKLDRQTQGVAFRNLAKLTHWAGKFEEARRSANDALRLLPEDLESRYVLADCLVHEGQIDAAIEQYSELFRIG-HFDRACQPFGELLA 697          
BLAST of mRNA_H-paniculata_contig81735.16198.1 vs. uniprot
Match: A0A5C5YN81_9BACT (Tetratricopeptide repeat protein n=1 Tax=Planctomycetes bacterium CA13 TaxID=2527986 RepID=A0A5C5YN81_9BACT)

HSP 1 Score: 71.2 bits (173), Expect = 2.760e-11
Identity = 46/134 (34.33%), Postives = 68/134 (50.75%), Query Frame = 1
Query:    1 FLDHVHPTIAVHRELAIQLLIKMQQMQIVRRGDQWKSELPSVIRTIEQQLDSRQMALAERNLAKVLGWAGKREESDRLIRKAASRLPNDAEAQSLSGDAYVRQQDWQAAETAFRAALKIDPNCTRAMEGLGIVL 402
            FLDHVHPTI  HR LA+ ++  +Q    +      + ++ +V R +E +++     +A+RNLAKVL WAGK EE++   R A   L  D E+Q +  D   R      A   + + L   P   RA    G +L
Sbjct:  395 FLDHVHPTIEAHRALALWIVECLQDHHSIGGDPIEEVDVATVKRLVESRINLASHGIAQRNLAKVLHWAGKFEEAEPRARDAIETLGGDHESQLVRADCLYRTNRIDEAAAEYESLLVTYPFDARAYHRYGEML 528          
BLAST of mRNA_H-paniculata_contig81735.16198.1 vs. uniprot
Match: A0A3D6D1U7_9BACT (Uncharacterized protein n=5 Tax=Verrucomicrobiales TaxID=48461 RepID=A0A3D6D1U7_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 9.220e-11
Identity = 48/141 (34.04%), Postives = 73/141 (51.77%), Query Frame = 1
Query:    1 FLDHVHPTIAVHRELAIQLLIKMQQMQIVRRGDQWKSELPSVIRTIEQQLDSRQMALAERNLAKVLGWAGKREESDRLIRKAASRLPNDAEAQSLSGDAYVRQQDWQAAETAFRAALKIDPNCTRAMEGLGIVLSAGSQLE 423
            FLDHVHPTI  HR LA++LL  M +   +   ++    +  V +++   +D  + A A  NLAKVLGWAGKR+E+    +K+          Q  +G A         A   +R AL++DP+ + A   LG +L    ++E
Sbjct:  421 FLDHVHPTIESHRLLALELLGTMDRNNWINLKEEGLL-VAKVTKSVMDGVDRAEHAFAMMNLAKVLGWAGKRQEAYDASKKSVELNSKSPNGQFQAGLAAFLADKLDEAMMHYRHALRLDPSHSDAHCNLGGLLEDNGEIE 560          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig81735.16198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517YZY1_9PLAN1.830e-2143.08Lipoprotein NlpI n=1 Tax=Maioricimonas rarisocia T... [more]
A0A2E7EGL1_9PLAN1.390e-1740.00Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A2E5G668_9BACT4.360e-1638.52Uncharacterized protein n=1 Tax=Phycisphaeraceae b... [more]
A0A847GWS0_9BACT9.440e-1541.18Tetratricopeptide repeat protein n=1 Tax=Candidatu... [more]
A0A2E6AK00_9PLAN2.070e-1340.95Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A350M464_9FLAO1.720e-1238.78Uncharacterized protein n=1 Tax=Flavobacteriales b... [more]
A0A0S7ZTZ9_9BACT4.320e-1233.82Uncharacterized protein n=1 Tax=Gemmatimonas sp. S... [more]
A0A5B9M939_9BACT2.070e-1135.56Tetratricopeptide repeat protein n=2 Tax=Stieleria... [more]
A0A5C5YN81_9BACT2.760e-1134.33Tetratricopeptide repeat protein n=1 Tax=Planctomy... [more]
A0A3D6D1U7_9BACT9.220e-1134.04Uncharacterized protein n=5 Tax=Verrucomicrobiales... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig81735contigH-paniculata_contig81735:2..517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score67.0
Seed ortholog evalue9.7e-09
Seed eggNOG ortholog706587.Desti_2437
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Tetratricopeptide repeat
EggNOG OGs1R1JQ@1224,2WTFW@28221,4377S@68525,COG0457@1,COG0457@2
COG Functional cat.S
Best tax levelDeltaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size516
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931024.439919-CDS-H-paniculata_contig81735:1..5171622931024.439919-CDS-H-paniculata_contig81735:1..517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81735 2..517 +
1691481555.6586244-CDS-H-paniculata_contig81735:1..5171691481555.6586244-CDS-H-paniculata_contig81735:1..517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81735 2..517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig81735.16198.1prot_H-paniculata_contig81735.16198.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig81735 2..517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig81735.16198.1

>prot_H-paniculata_contig81735.16198.1 ID=prot_H-paniculata_contig81735.16198.1|Name=mRNA_H-paniculata_contig81735.16198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=172bp
FLDHVHPTIAVHRELAIQLLIKMQQMQIVRRGDQWKSELPSVIRTIEQQL
DSRQMALAERNLAKVLGWAGKREESDRLIRKAASRLPNDAEAQSLSGDAY
VRQQDWQAAETAFRAALKIDPNCTRAMEGLGIVLSAGSQLEMAETYFRKA
IKLDPTSVVAHYNLGNVLFDQG
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mRNA from alignment at H-paniculata_contig81735:2..517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig81735.16198.1 ID=mRNA_H-paniculata_contig81735.16198.1|Name=mRNA_H-paniculata_contig81735.16198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=516bp|location=Sequence derived from alignment at H-paniculata_contig81735:2..517+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCTCGACCACGTCCACCCAACCATCGCTGTCCATCGAGAACTCGCGAT CCAGCTGCTGATCAAAATGCAGCAAATGCAAATCGTACGTCGCGGTGATC AGTGGAAGTCGGAATTGCCCAGCGTGATCCGAACGATCGAACAACAACTG GACTCTCGCCAAATGGCATTGGCCGAAAGAAACCTGGCAAAGGTGCTGGG CTGGGCTGGAAAGCGTGAAGAGTCGGATCGGCTGATCAGGAAAGCGGCCA GTCGCCTGCCGAATGACGCCGAAGCTCAGAGCCTGTCCGGAGATGCGTAT GTCCGGCAGCAGGACTGGCAGGCGGCCGAGACCGCATTCCGGGCGGCCCT GAAAATCGACCCTAATTGCACACGTGCGATGGAAGGGCTGGGCATCGTGC TGAGTGCGGGCAGTCAGCTGGAGATGGCAGAAACCTACTTTCGAAAAGCC ATCAAACTCGATCCCACAAGCGTCGTCGCTCACTACAACCTCGGAAACGT CCTGTTCGATCAGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig81735:2..517+

>mRNA_H-paniculata_contig81735.16198.1 ID=mRNA_H-paniculata_contig81735.16198.1|Name=mRNA_H-paniculata_contig81735.16198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at H-paniculata_contig81735:2..517+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCTCGACCACGTCCACCCAACCATCGCTGTCCATCGAGAACTCGCGAT
CCAGCTGCTGATCAAAATGCAGCAAATGCAAATCGTACGTCGCGGTGATC
AGTGGAAGTCGGAATTGCCCAGCGTGATCCGAACGATCGAACAACAACTG
GACTCTCGCCAAATGGCATTGGCCGAAAGAAACCTGGCAAAGGTGCTGGG
CTGGGCTGGAAAGCGTGAAGAGTCGGATCGGCTGATCAGGAAAGCGGCCA
GTCGCCTGCCGAATGACGCCGAAGCTCAGAGCCTGTCCGGAGATGCGTAT
GTCCGGCAGCAGGACTGGCAGGCGGCCGAGACCGCATTCCGGGCGGCCCT
GAAAATCGACCCTAATTGCACACGTGCGATGGAAGGGCTGGGCATCGTGC
TGAGTGCGGGCAGTCAGCTGGAGATGGCAGAAACCTACTTTCGAAAAGCC
ATCAAACTCGATCCCACAAGCGTCGTCGCTCACTACAACCTCGGAAACGT
CCTGTTCGATCAGGGGTTTCTCGACCACGTCCACCCAACCATCGCTGTCC
ATCGAGAACTCGCGATCCAGCTGCTGATCAAAATGCAGCAAATGCAAATC
GTACGTCGCGGTGATCAGTGGAAGTCGGAATTGCCCAGCGTGATCCGAAC
GATCGAACAACAACTGGACTCTCGCCAAATGGCATTGGCCGAAAGAAACC
TGGCAAAGGTGCTGGGCTGGGCTGGAAAGCGTGAAGAGTCGGATCGGCTG
ATCAGGAAAGCGGCCAGTCGCCTGCCGAATGACGCCGAAGCTCAGAGCCT
GTCCGGAGATGCGTATGTCCGGCAGCAGGACTGGCAGGCGGCCGAGACCG
CATTCCGGGCGGCCCTGAAAATCGACCCTAATTGCACACGTGCGATGGAA
GGGCTGGGCATCGTGCTGAGTGCGGGCAGTCAGCTGGAGATGGCAGAAAC
CTACTTTCGAAAAGCCATCAAACTCGATCCCACAAGCGTCGTCGCTCACT
ACAACCTCGGAAACGTCCTGTTCGATCAGGGG
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