mRNA_H-paniculata_contig8170.16197.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8170.16197.1
Unique NamemRNA_H-paniculata_contig8170.16197.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8170.16197.1 vs. uniprot
Match: D7FLJ7_ECTSI (Glycosyltransferase, family GT49 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ7_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 2.810e-34
Identity = 67/110 (60.91%), Postives = 82/110 (74.55%), Query Frame = 1
Query:    1 PQPSSQVTLVTQCSYDRLEAVLQQALRWGGDVSLAVLIPSAPAMTMARAMEAVETLCSQIDRAWKSRPSL-SALSMDIALLDGVEADISRHDSCGPLYPVNTLRNLALIQ 327
            P P S+VTLVTQCS DRL AVL+QALRWGGD SLAV +PSAP       M  +  LC ++D+  ++ P+    LS+D+A+L+G EAD +RHD CGPLYPVNTLRNLALIQ
Sbjct: 1283 PSPESRVTLVTQCSTDRLPAVLEQALRWGGDTSLAVHVPSAPLSAKDETMSEIRRLCQRVDQEVRAAPNRRKQLSVDVAILEGAEADPARHDHCGPLYPVNTLRNLALIQ 1392          
BLAST of mRNA_H-paniculata_contig8170.16197.1 vs. uniprot
Match: A0A6H5JDE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE2_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 6.730e-15
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  148 MEAVETLCSQIDRAWKSRPS-LSALSMDIALLDGVEADISRHDSCGPLYPVNTLRNLALIQ 327
            M     LC ++D+  ++ PS L  LS+D+A+L+G EAD +RHD CGPLYPVNTLRNLAL+Q
Sbjct:    1 MSETRRLCQRVDQEVRAAPSRLKQLSVDVAILEGAEADPARHDHCGPLYPVNTLRNLALLQ 61          
BLAST of mRNA_H-paniculata_contig8170.16197.1 vs. uniprot
Match: A0A7S0MPE8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MPE8_9CHLO)

HSP 1 Score: 67.0 bits (162), Expect = 5.470e-12
Identity = 44/113 (38.94%), Postives = 56/113 (49.56%), Query Frame = 1
Query:    1 PQPSSQVTLVTQCSYDRLEAVLQQALRWGGDVSLAVLIPSAPAMTMARAMEAVETLCSQIDRAWKSRPSLSALSMDIALLDGVEADISRHDSCGP----LYPVNTLRNLALIQ 327
            P P   VT+VTQCS DRL  + Q A  W G VS A+ +   PA     A      L +  D     R +  A  +D+AL+ G EAD +  +        LYP+N LRNLAL Q
Sbjct:    9 PPPPGSVTVVTQCSVDRLPRLRQLARAWAGPVSAALFVEGGPASPAEEA-----ALAAVADMQEALRAASGACQVDVALMYGAEADAAPANPSAAEYDQLYPINALRNLALDQ 116          
BLAST of mRNA_H-paniculata_contig8170.16197.1 vs. uniprot
Match: A0A7S3XZ30_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ30_HETAK)

HSP 1 Score: 62.0 bits (149), Expect = 6.190e-9
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 1
Query:   19 VTLVTQCSYDRLEAVLQQALRWGGDVSLAVLIPSAPAMTMARAMEAVETLCSQIDRAWKSRPSLSALSMDIALLDGVEADISRHDSCGPLYPVNTLRNLALIQ 327
            V+LVTQCS DRL  +  Q   WGG  S+AV I +  A      ++ VE+        +K+  +L+++ +D+ LL G E           LYP+NTLRNLAL Q
Sbjct:   62 VSLVTQCSVDRLPFLKDQLTAWGGIASIAVYIRTESAEQQTDELKQVESF-------FKAMDALNSVWLDVGLLFGFEEKPWMEFGNTVLYPINTLRNLALAQ 157          
BLAST of mRNA_H-paniculata_contig8170.16197.1 vs. uniprot
Match: I0Z6V9_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z6V9_COCSC)

HSP 1 Score: 55.5 bits (132), Expect = 1.190e-6
Identity = 43/114 (37.72%), Postives = 55/114 (48.25%), Query Frame = 1
Query:    1 PQPSSQVTLVTQCSYDRLEAVLQQALRWGGDVSLAVLIP-----SAPAMTMARAMEAVETLCSQIDRAWKSRPSLSALSMDIALLDGVEADISRHDSCGPLYPVNTLRNLALIQ 327
            P+  + +T++TQCS DRL  + +Q   W G  S+AV  P     S  A  +  A+  VE    QIDR      S     MDI LL  V   I  HD     YP N LRN AL++
Sbjct:   43 PRDKNDITIITQCSLDRLYMLEEQCNTWQGLTSVAVYYPLYIFQSTNADRLREAITTVENFHEQIDR------SHGKCRMDIVLLSEV---IKPHDEWS--YPYNALRNHALVR 145          
BLAST of mRNA_H-paniculata_contig8170.16197.1 vs. uniprot
Match: A0A8J9S4A7_9CHLO (LARGE xylosyl- and glucuronyltransferase 1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S4A7_9CHLO)

HSP 1 Score: 52.0 bits (123), Expect = 1.980e-5
Identity = 42/114 (36.84%), Postives = 54/114 (47.37%), Query Frame = 1
Query:    1 PQPSSQVTLVTQCSYDRLEAVLQQALRWGGDVSLAVLIP-----SAPAMTMARAMEAVETLCSQIDRAWKSRPSLSALSMDIALLDGVEADISRHDSCGPLYPVNTLRNLALIQ 327
            P+    +T++TQCS DRL  + +Q   W G  S+AV  P     +  A  +  A+  VE    QIDR      S     MDI LL  V   I   D+    YP N LRN ALI+
Sbjct:   77 PREKHDITIITQCSLDRLYMLEEQCKTWQGITSVAVYYPLYIFQNTNADRLREAITTVENFHEQIDR------SHGKCRMDIVLLSEV---IKPQDAWS--YPYNALRNHALIR 179          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8170.16197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FLJ7_ECTSI2.810e-3460.91Glycosyltransferase, family GT49 n=1 Tax=Ectocarpu... [more]
A0A6H5JDE2_9PHAE6.730e-1557.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0MPE8_9CHLO5.470e-1238.94Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A7S3XZ30_HETAK6.190e-938.83Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
I0Z6V9_COCSC1.190e-637.72Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
A0A8J9S4A7_9CHLO1.980e-536.84LARGE xylosyl- and glucuronyltransferase 1 n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8170contigH-paniculata_contig8170:9220..9546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.6
Seed ortholog evalue1.4e-29
Seed eggNOG ortholog2880.D7FLJ7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein O-linked glycosylation
EggNOG OGsKOG3765@1,KOG3765@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931024.4079237-CDS-H-paniculata_contig8170:9219..95461622931024.4079237-CDS-H-paniculata_contig8170:9219..9546Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8170 9220..9546 +
1691481555.644833-CDS-H-paniculata_contig8170:9219..95461691481555.644833-CDS-H-paniculata_contig8170:9219..9546Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8170 9220..9546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8170.16197.1prot_H-paniculata_contig8170.16197.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8170 9220..9546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8170.16197.1

>prot_H-paniculata_contig8170.16197.1 ID=prot_H-paniculata_contig8170.16197.1|Name=mRNA_H-paniculata_contig8170.16197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
PQPSSQVTLVTQCSYDRLEAVLQQALRWGGDVSLAVLIPSAPAMTMARAM
EAVETLCSQIDRAWKSRPSLSALSMDIALLDGVEADISRHDSCGPLYPVN
TLRNLALIQ
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mRNA from alignment at H-paniculata_contig8170:9220..9546+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8170.16197.1 ID=mRNA_H-paniculata_contig8170.16197.1|Name=mRNA_H-paniculata_contig8170.16197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at H-paniculata_contig8170:9220..9546+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGCCGTCTAGCCAAGTGACTCTAGTCACGCAATGTTCCTACGACCG GCTCGAGGCGGTGCTGCAGCAAGCACTGAGATGGGGCGGGGATGTGAGTC TCGCCGTGTTGATCCCGTCAGCCCCGGCTATGACGATGGCTCGGGCGATG GAAGCGGTGGAGACCCTGTGCTCGCAGATCGACAGGGCGTGGAAATCACG GCCTTCTCTCTCGGCGCTATCGATGGACATTGCGTTGCTGGATGGAGTGG AGGCGGACATTTCCAGGCACGACTCCTGTGGGCCGCTGTATCCTGTGAAC ACTCTCAGGAATTTGGCTCTCATTCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig8170:9220..9546+

>mRNA_H-paniculata_contig8170.16197.1 ID=mRNA_H-paniculata_contig8170.16197.1|Name=mRNA_H-paniculata_contig8170.16197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig8170:9220..9546+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGCCGTCTAGCCAAGTGACTCTAGTCACGCAATGTTCCTACGACCG
GCTCGAGGCGGTGCTGCAGCAAGCACTGAGATGGGGCGGGGATGTGAGTC
TCGCCGTGTTGATCCCGTCAGCCCCGGCTATGACGATGGCTCGGGCGATG
GAAGCGGTGGAGACCCTGTGCTCGCAGATCGACAGGGCGTGGAAATCACG
GCCTTCTCTCTCGGCGCTATCGATGGACATTGCGTTGCTGGATGGAGTGG
AGGCGGACATTTCCAGGCACGACTCCTGTGGGCCGCTGTATCCTGTGAAC
ACTCTCAGGAATTTGGCTCTCATTCAGCCACAGCCGTCTAGCCAAGTGAC
TCTAGTCACGCAATGTTCCTACGACCGGCTCGAGGCGGTGCTGCAGCAAG
CACTGAGATGGGGCGGGGATGTGAGTCTCGCCGTGTTGATCCCGTCAGCC
CCGGCTATGACGATGGCTCGGGCGATGGAAGCGGTGGAGACCCTGTGCTC
GCAGATCGACAGGGCGTGGAAATCACGGCCTTCTCTCTCGGCGCTATCGA
TGGACATTGCGTTGCTGGATGGAGTGGAGGCGGACATTTCCAGGCACGAC
TCCTGTGGGCCGCTGTATCCTGTGAACACTCTCAGGAATTTGGCTCTCAT
TCAG
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