mRNA_H-paniculata_contig8170.16197.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig8170.16197.1 vs. uniprot
Match: D7FLJ7_ECTSI (Glycosyltransferase, family GT49 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ7_ECTSI) HSP 1 Score: 134 bits (337), Expect = 2.810e-34 Identity = 67/110 (60.91%), Postives = 82/110 (74.55%), Query Frame = 1
Query: 1 PQPSSQVTLVTQCSYDRLEAVLQQALRWGGDVSLAVLIPSAPAMTMARAMEAVETLCSQIDRAWKSRPSL-SALSMDIALLDGVEADISRHDSCGPLYPVNTLRNLALIQ 327
P P S+VTLVTQCS DRL AVL+QALRWGGD SLAV +PSAP M + LC ++D+ ++ P+ LS+D+A+L+G EAD +RHD CGPLYPVNTLRNLALIQ
Sbjct: 1283 PSPESRVTLVTQCSTDRLPAVLEQALRWGGDTSLAVHVPSAPLSAKDETMSEIRRLCQRVDQEVRAAPNRRKQLSVDVAILEGAEADPARHDHCGPLYPVNTLRNLALIQ 1392
BLAST of mRNA_H-paniculata_contig8170.16197.1 vs. uniprot
Match: A0A6H5JDE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE2_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 6.730e-15 Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 1
Query: 148 MEAVETLCSQIDRAWKSRPS-LSALSMDIALLDGVEADISRHDSCGPLYPVNTLRNLALIQ 327
M LC ++D+ ++ PS L LS+D+A+L+G EAD +RHD CGPLYPVNTLRNLAL+Q
Sbjct: 1 MSETRRLCQRVDQEVRAAPSRLKQLSVDVAILEGAEADPARHDHCGPLYPVNTLRNLALLQ 61
BLAST of mRNA_H-paniculata_contig8170.16197.1 vs. uniprot
Match: A0A7S0MPE8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MPE8_9CHLO) HSP 1 Score: 67.0 bits (162), Expect = 5.470e-12 Identity = 44/113 (38.94%), Postives = 56/113 (49.56%), Query Frame = 1
Query: 1 PQPSSQVTLVTQCSYDRLEAVLQQALRWGGDVSLAVLIPSAPAMTMARAMEAVETLCSQIDRAWKSRPSLSALSMDIALLDGVEADISRHDSCGP----LYPVNTLRNLALIQ 327
P P VT+VTQCS DRL + Q A W G VS A+ + PA A L + D R + A +D+AL+ G EAD + + LYP+N LRNLAL Q
Sbjct: 9 PPPPGSVTVVTQCSVDRLPRLRQLARAWAGPVSAALFVEGGPASPAEEA-----ALAAVADMQEALRAASGACQVDVALMYGAEADAAPANPSAAEYDQLYPINALRNLALDQ 116
BLAST of mRNA_H-paniculata_contig8170.16197.1 vs. uniprot
Match: A0A7S3XZ30_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ30_HETAK) HSP 1 Score: 62.0 bits (149), Expect = 6.190e-9 Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 1
Query: 19 VTLVTQCSYDRLEAVLQQALRWGGDVSLAVLIPSAPAMTMARAMEAVETLCSQIDRAWKSRPSLSALSMDIALLDGVEADISRHDSCGPLYPVNTLRNLALIQ 327
V+LVTQCS DRL + Q WGG S+AV I + A ++ VE+ +K+ +L+++ +D+ LL G E LYP+NTLRNLAL Q
Sbjct: 62 VSLVTQCSVDRLPFLKDQLTAWGGIASIAVYIRTESAEQQTDELKQVESF-------FKAMDALNSVWLDVGLLFGFEEKPWMEFGNTVLYPINTLRNLALAQ 157
BLAST of mRNA_H-paniculata_contig8170.16197.1 vs. uniprot
Match: I0Z6V9_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z6V9_COCSC) HSP 1 Score: 55.5 bits (132), Expect = 1.190e-6 Identity = 43/114 (37.72%), Postives = 55/114 (48.25%), Query Frame = 1
Query: 1 PQPSSQVTLVTQCSYDRLEAVLQQALRWGGDVSLAVLIP-----SAPAMTMARAMEAVETLCSQIDRAWKSRPSLSALSMDIALLDGVEADISRHDSCGPLYPVNTLRNLALIQ 327
P+ + +T++TQCS DRL + +Q W G S+AV P S A + A+ VE QIDR S MDI LL V I HD YP N LRN AL++
Sbjct: 43 PRDKNDITIITQCSLDRLYMLEEQCNTWQGLTSVAVYYPLYIFQSTNADRLREAITTVENFHEQIDR------SHGKCRMDIVLLSEV---IKPHDEWS--YPYNALRNHALVR 145
BLAST of mRNA_H-paniculata_contig8170.16197.1 vs. uniprot
Match: A0A8J9S4A7_9CHLO (LARGE xylosyl- and glucuronyltransferase 1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S4A7_9CHLO) HSP 1 Score: 52.0 bits (123), Expect = 1.980e-5 Identity = 42/114 (36.84%), Postives = 54/114 (47.37%), Query Frame = 1
Query: 1 PQPSSQVTLVTQCSYDRLEAVLQQALRWGGDVSLAVLIP-----SAPAMTMARAMEAVETLCSQIDRAWKSRPSLSALSMDIALLDGVEADISRHDSCGPLYPVNTLRNLALIQ 327
P+ +T++TQCS DRL + +Q W G S+AV P + A + A+ VE QIDR S MDI LL V I D+ YP N LRN ALI+
Sbjct: 77 PREKHDITIITQCSLDRLYMLEEQCKTWQGITSVAVYYPLYIFQNTNADRLREAITTVENFHEQIDR------SHGKCRMDIVLLSEV---IKPQDAWS--YPYNALRNHALIR 179 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8170.16197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8170.16197.1 >prot_H-paniculata_contig8170.16197.1 ID=prot_H-paniculata_contig8170.16197.1|Name=mRNA_H-paniculata_contig8170.16197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp PQPSSQVTLVTQCSYDRLEAVLQQALRWGGDVSLAVLIPSAPAMTMARAMback to top mRNA from alignment at H-paniculata_contig8170:9220..9546+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8170.16197.1 ID=mRNA_H-paniculata_contig8170.16197.1|Name=mRNA_H-paniculata_contig8170.16197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at H-paniculata_contig8170:9220..9546+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8170:9220..9546+ >mRNA_H-paniculata_contig8170.16197.1 ID=mRNA_H-paniculata_contig8170.16197.1|Name=mRNA_H-paniculata_contig8170.16197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig8170:9220..9546+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |