mRNA_H-paniculata_contig8169.16194.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8169.16194.1
Unique NamemRNA_H-paniculata_contig8169.16194.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8169.16194.1 vs. uniprot
Match: A0A6H5JQY5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQY5_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 2.880e-61
Identity = 101/116 (87.07%), Postives = 108/116 (93.10%), Query Frame = 1
Query:   13 QILDKYEDLKFGELQGMDAKKVLLIVFVMTLHSFSEGVGIGVSFGGVNGANLGFLISATLAVHNVPEGLAVALVLNPRGVSKLNTGLWCVFTSLPQPLMAVPAYMFVEQFMPLLPV 360
            ++LD YED+K GEL GMDAKKVLLIVFVMTLHSFSEGVGIGVSFGG  GA LGFLISATLAVHNVPEGLAVALVL+PRGVSKLNTGLWCVFTSLPQPLMAVPA++FV QFMP LP+
Sbjct:  244 KVLDNYEDIKLGELHGMDAKKVLLIVFVMTLHSFSEGVGIGVSFGGDGGARLGFLISATLAVHNVPEGLAVALVLHPRGVSKLNTGLWCVFTSLPQPLMAVPAFLFVGQFMPFLPI 359          
BLAST of mRNA_H-paniculata_contig8169.16194.1 vs. uniprot
Match: A0A7S2UW33_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW33_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.230e-59
Identity = 96/113 (84.96%), Postives = 102/113 (90.27%), Query Frame = 1
Query:   22 DKYEDLKFGELQGMDAKKVLLIVFVMTLHSFSEGVGIGVSFGGVNGANLGFLISATLAVHNVPEGLAVALVLNPRGVSKLNTGLWCVFTSLPQPLMAVPAYMFVEQFMPLLPV 360
            DKYEDLK   LQG DAKKVLLI+FVMTLHSFSEGVGIGVSFGG+ GA LG  ISATLAVHNVPEGLAVALVLNPR VSKLN+ LWCVFTSLPQPLMAVPAY+F+E F+PLLPV
Sbjct:    1 DKYEDLKLCGLQGADAKKVLLIIFVMTLHSFSEGVGIGVSFGGLTGAQLGVFISATLAVHNVPEGLAVALVLNPRKVSKLNSALWCVFTSLPQPLMAVPAYLFIEHFIPLLPV 113          
BLAST of mRNA_H-paniculata_contig8169.16194.1 vs. uniprot
Match: A0A835Z5V1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5V1_9STRA)

HSP 1 Score: 191 bits (486), Expect = 1.060e-58
Identity = 97/116 (83.62%), Postives = 104/116 (89.66%), Query Frame = 1
Query:   13 QILDKYEDLKFGELQGMDAKKVLLIVFVMTLHSFSEGVGIGVSFGGVNGANLGFLISATLAVHNVPEGLAVALVLNPRGVSKLNTGLWCVFTSLPQPLMAVPAYMFVEQFMPLLPV 360
            ++LDKYED+  G+L G DAKK LLIVFVM LHSFSEGVGIGVSFGG  GA LGFLISATLAVHNVPEGLAVALVL+PRGVSKLNTGLWC+FTSLPQPLMAV AY FVEQF+P LPV
Sbjct:  127 RVLDKYEDIHLGDLAGADAKKALLIVFVMFLHSFSEGVGIGVSFGGSTGAQLGFLISATLAVHNVPEGLAVALVLHPRGVSKLNTGLWCIFTSLPQPLMAVLAYAFVEQFLPFLPV 242          
BLAST of mRNA_H-paniculata_contig8169.16194.1 vs. uniprot
Match: A0A836CI09_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI09_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.500e-57
Identity = 95/116 (81.90%), Postives = 104/116 (89.66%), Query Frame = 1
Query:   13 QILDKYEDLKFGELQGMDAKKVLLIVFVMTLHSFSEGVGIGVSFGGVNGANLGFLISATLAVHNVPEGLAVALVLNPRGVSKLNTGLWCVFTSLPQPLMAVPAYMFVEQFMPLLPV 360
            ++LDKYED+  G+L G+DAKK LLIV VM LHSFSEGVGIGVSFGG  GA LGFLISATLAVHN+PEGLAVALVL+PRGVSKLNTGLWC+FTSLPQPLMAV AY FVEQF+P LPV
Sbjct:  146 KVLDKYEDIHIGDLVGVDAKKALLIVLVMFLHSFSEGVGIGVSFGGSTGAQLGFLISATLAVHNIPEGLAVALVLHPRGVSKLNTGLWCIFTSLPQPLMAVLAYKFVEQFLPFLPV 261          
BLAST of mRNA_H-paniculata_contig8169.16194.1 vs. uniprot
Match: A0A7S2PRV5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PRV5_9STRA)

HSP 1 Score: 169 bits (429), Expect = 2.440e-51
Identity = 86/122 (70.49%), Postives = 100/122 (81.97%), Query Frame = 1
Query:    1 FFLG--QILDKYEDLKFGELQGMDAKKVLLIVFVMTLHSFSEGVGIGVSFGGVNGANLGFLISATLAVHNVPEGLAVALVLNPRGVSKLNTGLWCVFTSLPQPLMAVPAYMFVEQFMPLLPV 360
            F LG    LD++EDLK G L G DA+KV+LI+FVMTLHSFSEGVGIGVSFGG NG  LG  ISA+LAVHN+PEGLAVA+VL PR VSKL   +WC+ TSLPQPLMAVPA+MFV  F+P+LP+
Sbjct:   22 FLLGTKSFLDQHEDLKVGGLSGADARKVMLIIFVMTLHSFSEGVGIGVSFGGDNGDKLGMFISASLAVHNIPEGLAVAIVLLPRRVSKLTASMWCIATSLPQPLMAVPAFMFVNTFVPILPI 143          
BLAST of mRNA_H-paniculata_contig8169.16194.1 vs. uniprot
Match: B8C401_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C401_THAPS)

HSP 1 Score: 167 bits (423), Expect = 5.330e-50
Identity = 87/122 (71.31%), Postives = 98/122 (80.33%), Query Frame = 1
Query:    1 FFLG--QILDKYEDLKFGELQGMDAKKVLLIVFVMTLHSFSEGVGIGVSFGGVNGANLGFLISATLAVHNVPEGLAVALVLNPRGVSKLNTGLWCVFTSLPQPLMAVPAYMFVEQFMPLLPV 360
            F LG    L+K ED+K G L G D KK+LLIVFVMTLHSFSEGVGIGVSFGG +G +LG  ISA+LAVHN+PEGLAVA+VL PR VSK    +WCV TSLPQPLMAVPA+MFV  F+PLLPV
Sbjct:   56 FILGTKSFLEKNEDVKVGSLSGADTKKILLIVFVMTLHSFSEGVGIGVSFGGEHGHDLGVFISASLAVHNIPEGLAVAIVLLPRKVSKATAAIWCVVTSLPQPLMAVPAFMFVHSFLPLLPV 177          
BLAST of mRNA_H-paniculata_contig8169.16194.1 vs. uniprot
Match: A0A7S1FWC4_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FWC4_9STRA)

HSP 1 Score: 167 bits (423), Expect = 5.490e-50
Identity = 84/118 (71.19%), Postives = 97/118 (82.20%), Query Frame = 1
Query:    4 FLGQILDKYEDLKFGELQGMDAKKVLLIVFVMTLHSFSEGVGIGVSFGGVNGANLGFLISATLAVHNVPEGLAVALVLNPRGVSKLNTGLWCVFTSLPQPLMAVPAYMFVEQFMPLLP 357
            F    +D +EDL+ G L G DAKKVLLIV VMTLHS +EGVGIGVSFGG +G  LG  ISA+LAVHNVPEGLAVA+VL PRGVSKL+  LWC+FTS+PQP+MAVPAY+FVE F+P LP
Sbjct:   60 FTKSFIDSHEDLEVGNLVGADAKKVLLIVLVMTLHSLTEGVGIGVSFGGSHGHALGVFISASLAVHNVPEGLAVAVVLLPRGVSKLSAALWCIFTSVPQPIMAVPAYLFVEHFIPFLP 177          
BLAST of mRNA_H-paniculata_contig8169.16194.1 vs. uniprot
Match: A0A7S2ELI4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ELI4_9STRA)

HSP 1 Score: 168 bits (425), Expect = 1.610e-49
Identity = 85/114 (74.56%), Postives = 97/114 (85.09%), Query Frame = 1
Query:   19 LDKYEDLKFGELQGMDAKKVLLIVFVMTLHSFSEGVGIGVSFGGVNGANLGFLISATLAVHNVPEGLAVALVLNPRGVSKLNTGLWCVFTSLPQPLMAVPAYMFVEQFMPLLPV 360
            L+++EDLK G L G D +KVLLIVFVMTLHSFSEGVGIGVSFGG NG+ LG  ISA+LAVHNVPEGLAVA+VL PR VSKL   LWC+ TSLPQPLMAVPA++FV  F+P+LPV
Sbjct:  166 LEQHEDLKVGSLGGADLRKVLLIVFVMTLHSFSEGVGIGVSFGGENGSELGVFISASLAVHNVPEGLAVAVVLLPRKVSKLTASLWCIMTSLPQPLMAVPAFLFVHYFIPILPV 279          
BLAST of mRNA_H-paniculata_contig8169.16194.1 vs. uniprot
Match: A0A7S1FXS5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FXS5_9STRA)

HSP 1 Score: 167 bits (423), Expect = 7.610e-49
Identity = 84/118 (71.19%), Postives = 97/118 (82.20%), Query Frame = 1
Query:    4 FLGQILDKYEDLKFGELQGMDAKKVLLIVFVMTLHSFSEGVGIGVSFGGVNGANLGFLISATLAVHNVPEGLAVALVLNPRGVSKLNTGLWCVFTSLPQPLMAVPAYMFVEQFMPLLP 357
            F    +D +EDL+ G L G DAKKVLLIV VMTLHS +EGVGIGVSFGG +G  LG  ISA+LAVHNVPEGLAVA+VL PRGVSKL+  LWC+FTS+PQP+MAVPAY+FVE F+P LP
Sbjct:  156 FTKSFIDSHEDLEVGNLVGADAKKVLLIVLVMTLHSLTEGVGIGVSFGGSHGHALGVFISASLAVHNVPEGLAVAVVLLPRGVSKLSAALWCIFTSVPQPIMAVPAYLFVEHFIPFLP 273          
BLAST of mRNA_H-paniculata_contig8169.16194.1 vs. uniprot
Match: W7TTH2_9STRA (Zinc iron permease n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTH2_9STRA)

HSP 1 Score: 166 bits (421), Expect = 8.840e-48
Identity = 83/116 (71.55%), Postives = 98/116 (84.48%), Query Frame = 1
Query:   13 QILDKYEDLKFGELQGMDAKKVLLIVFVMTLHSFSEGVGIGVSFGGVNGANLGFLISATLAVHNVPEGLAVALVLNPRGVSKLNTGLWCVFTSLPQPLMAVPAYMFVEQFMPLLPV 360
            ++LD++ED+K   L G++A+KVLL++FVMTLHSF+EGVGIGVSFGG  GA LG  IS TLAVHNVPEGLAVALVL P+GV+K  T LW +FTSLPQPLMAVPAY FVE F+P LPV
Sbjct:  233 RLLDQHEDVKVAGLDGLEARKVLLLIFVMTLHSFTEGVGIGVSFGGDKGAKLGVFISLTLAVHNVPEGLAVALVLVPKGVNKWKTALWSIFTSLPQPLMAVPAYCFVESFIPFLPV 348          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8169.16194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQY5_9PHAE2.880e-6187.07Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UW33_9STRA2.230e-5984.96Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z5V1_9STRA1.060e-5883.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CI09_9STRA1.500e-5781.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2PRV5_9STRA2.440e-5170.49Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
B8C401_THAPS5.330e-5071.31Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S1FWC4_9STRA5.490e-5071.19Hypothetical protein n=3 Tax=Corethron hystrix Tax... [more]
A0A7S2ELI4_9STRA1.610e-4974.56Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S1FXS5_9STRA7.610e-4971.19Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
W7TTH2_9STRA8.840e-4871.55Zinc iron permease n=2 Tax=Monodopsidaceae TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8169contigH-paniculata_contig8169:1569..2766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.1
Seed ortholog evalue3e-49
Seed eggNOG ortholog2880.D8LTB8
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008150,GO:0008324,GO:0015075,GO:0015318,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0046873,GO:0046915,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071577,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662
EggNOG free text desc.zinc ion transmembrane transporter activity
EggNOG OGsCOG0428@1,KOG2474@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931023.9452937-CDS-H-paniculata_contig8169:1568..18351622931023.9452937-CDS-H-paniculata_contig8169:1568..1835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8169 1569..1835 +
1691481555.4382792-CDS-H-paniculata_contig8169:1568..18351691481555.4382792-CDS-H-paniculata_contig8169:1568..1835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8169 1569..1835 +
1622931023.966569-CDS-H-paniculata_contig8169:2673..27661622931023.966569-CDS-H-paniculata_contig8169:2673..2766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8169 2674..2766 +
1691481555.4481666-CDS-H-paniculata_contig8169:2673..27661691481555.4481666-CDS-H-paniculata_contig8169:2673..2766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8169 2674..2766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8169.16194.1prot_H-paniculata_contig8169.16194.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8169 1569..2766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8169.16194.1

>prot_H-paniculata_contig8169.16194.1 ID=prot_H-paniculata_contig8169.16194.1|Name=mRNA_H-paniculata_contig8169.16194.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
FFLGQILDKYEDLKFGELQGMDAKKVLLIVFVMTLHSFSEGVGIGVSFGG
VNGANLGFLISATLAVHNVPEGLAVALVLNPRGVSKLNTGLWCVFTSLPQ
PLMAVPAYMFVEQFMPLLPV
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mRNA from alignment at H-paniculata_contig8169:1569..2766+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8169.16194.1 ID=mRNA_H-paniculata_contig8169.16194.1|Name=mRNA_H-paniculata_contig8169.16194.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1198bp|location=Sequence derived from alignment at H-paniculata_contig8169:1569..2766+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTTTCTTGGACAGATTTTGGATAAGTACGAGGACCTTAAGTTTGGCGA GCTGCAAGGAATGGACGCAAAGAAAGTGTTGCTGATAGTTTTTGTGATGA CCCTTCACTCCTTCTCTGAGGGTGTGGGCATCGGGGTATCGTTCGGGGGA GTCAACGGCGCCAATCTGGGGTTTCTGATTTCGGCGACGCTGGCGGTGCA CAATGTGCCCGAGGGGTTAGCGGTGGCGCTTGTGCTGAATCCTCGGGGGG TGTCCAAACTCAACACGGTAAGTGGACGAAAGTACGTGTTTTTGTTGTAA GAGGGAGAGAGGGGGATAAGCAGTGTACTCATGTTGAACTGTTGGGCTCG CGCAGCTGCCCTCAAAATTTCGGTCGTGTACTTGAGCAGTATCAGCAAAA GTAGACCATCGTTGTACATCCATCCATTCACTCATTATATTATTATTATT TTTCTTCAAGGGGGGAAGGGATGGGGGGCGTGGATTATGGTTTTGGCTTT TAACCGTCACTTTCATATATTGAAATCGCATGTATACACGCATCAGTTAA TGTTTTGGAGCAAATTTTTCCTAATTCCACATTTTTTTGCCGAGGCGAGT TGGACTGTATAACAGTTAGTTTAGTATGTTACTTGTCATACTTTTACTAT TGGAGGCAACCCCCCCCCCCCCCGAGGAAGAGCATATGAAATACATTGCG TTGACGTTTTCCGTTTGGATAAACAGGGATGCGCTCAGGAGAGGGGAGGG TACTGGCGAGTGAGTTTTCGTTCTCCTCCTTTTTTTTCTGCGAATTTGTC TGTTTTTTTTCTCGTATTCTGTGAAACCTGGATCATGACCAATTGATGTG TGTCTTCATGAATATATTGCTGTGACGAAACCAGCACTTGCGTAGCCAAA AATGCTCCCATGCATTGTGTTGTAAAGACGTGCACCTAATCTAAGCTGAA TCTGTTTAGCTGTTGATTCTGCGTATTTTGTTTTGAAACGTCTCCTGCTG TATATTTTACCCGTTTTTCTTGTGTGTCTTGGTGTTTTTTTGTTTTTTTT GGGGGGGGGGGGGTTGTCGGGGATTGCCGCGTTTTTGTTTTTTTTTCCAT ATCAGGGCCTGTGGTGTGTGTTTACATCTCTTCCTCAGCCGCTGATGGCA GTACCTGCCTACATGTTCGTGGAGCAGTTCATGCCCTTACTGCCGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig8169:1569..2766+

>mRNA_H-paniculata_contig8169.16194.1 ID=mRNA_H-paniculata_contig8169.16194.1|Name=mRNA_H-paniculata_contig8169.16194.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig8169:1569..2766+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTTTCTTGGACAGATTTTGGATAAGTACGAGGACCTTAAGTTTGGCGA
GCTGCAAGGAATGGACGCAAAGAAAGTGTTGCTGATAGTTTTTGTGATGA
CCCTTCACTCCTTCTCTGAGGGTGTGGGCATCGGGGTATCGTTCGGGGGA
GTCAACGGCGCCAATCTGGGGTTTCTGATTTCGGCGACGCTGGCGGTGCA
CAATGTGCCCGAGGGGTTAGCGGTGGCGCTTGTGCTGAATCCTCGGGGGG
TGTCCAAACTCAACACGTTTTTTCTTGGACAGATTTTGGATAAGTACGAG
GACCTTAAGTTTGGCGAGCTGCAAGGAATGGACGCAAAGAAAGTGTTGCT
GATAGTTTTTGTGATGACCCTTCACTCCTTCTCTGAGGGTGTGGGCATCG
GGGTATCGTTCGGGGGAGTCAACGGCGCCAATCTGGGGTTTCTGATTTCG
GCGACGCTGGCGGTGCACAATGTGCCCGAGGGGTTAGCGGTGGCGCTTGT
GCTGAATCCTCGGGGGGTGTCCAAACTCAACACGGGCCTGTGGTGTGTGT
TTACATCTCTTCCTCAGCCGCTGATGGCAGTACCTGCCTACATGTTCGTG
GAGCAGTTCATGCCCTTACTGCCGGTGGGCCTGTGGTGTGTGTTTACATC
TCTTCCTCAGCCGCTGATGGCAGTACCTGCCTACATGTTCGTGGAGCAGT
TCATGCCCTTACTGCCGGTG
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