mRNA_H-paniculata_contig8168.16193.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8168.16193.1
Unique NamemRNA_H-paniculata_contig8168.16193.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8168.16193.1 vs. uniprot
Match: D8LD57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD57_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 5.150e-16
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 QQHVVFVGVPEESAVLPLKALAQEMISRGYRASLALPKSFQSW 129
            Q+HVVFVGVPEE+AVLPLKALAQEMI RGYRASLALP  FQ+W
Sbjct:  101 QEHVVFVGVPEETAVLPLKALAQEMIGRGYRASLALPHGFQAW 143
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BLAST of mRNA_H-paniculata_contig8168.16193.1 vs. uniprot
Match: A0A6H5K4N1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4N1_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 5.150e-16
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 QQHVVFVGVPEESAVLPLKALAQEMISRGYRASLALPKSFQSW 129
            Q+HVVFVGVPEE+AVLPLKALAQEMI RGYRASLALP  FQ+W
Sbjct:  101 QEHVVFVGVPEENAVLPLKALAQEMIGRGYRASLALPHGFQAW 143
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8168.16193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD57_ECTSI5.150e-1686.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4N1_9PHAE5.150e-1686.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8168contigH-paniculata_contig8168:10273..10404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931023.892589-CDS-H-paniculata_contig8168:10272..104041622931023.892589-CDS-H-paniculata_contig8168:10272..10404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8168 10273..10404 +
1691481555.4284039-CDS-H-paniculata_contig8168:10272..104041691481555.4284039-CDS-H-paniculata_contig8168:10272..10404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8168 10273..10404 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8168.16193.1prot_H-paniculata_contig8168.16193.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8168 10273..10404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8168.16193.1

>prot_H-paniculata_contig8168.16193.1 ID=prot_H-paniculata_contig8168.16193.1|Name=mRNA_H-paniculata_contig8168.16193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
QQHVVFVGVPEESAVLPLKALAQEMISRGYRASLALPKSFQSW*
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mRNA from alignment at H-paniculata_contig8168:10273..10404+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8168.16193.1 ID=mRNA_H-paniculata_contig8168.16193.1|Name=mRNA_H-paniculata_contig8168.16193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at H-paniculata_contig8168:10273..10404+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCAACATGTAGTGTTCGTCGGTGTACCGGAGGAAAGCGCCGTGCTCCC
CCTCAAAGCCTTGGCTCAGGAGATGATCTCGAGAGGCTATCGGGCAAGCT
TGGCTTTGCCTAAATCCTTCCAGAGCTGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig8168:10273..10404+

>mRNA_H-paniculata_contig8168.16193.1 ID=mRNA_H-paniculata_contig8168.16193.1|Name=mRNA_H-paniculata_contig8168.16193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at H-paniculata_contig8168:10273..10404+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCAACATGTAGTGTTCGTCGGTGTACCGGAGGAAAGCGCCGTGCTCCC
CCTCAAAGCCTTGGCTCAGGAGATGATCTCGAGAGGCTATCGGGCAAGCT
TGGCTTTGCCTAAATCCTTCCAGAGCTGGTGACAGCAACATGTAGTGTTC
GTCGGTGTACCGGAGGAAAGCGCCGTGCTCCCCCTCAAAGCCTTGGCTCA
GGAGATGATCTCGAGAGGCTATCGGGCAAGCTTGGCTTTGCCTAAATCCT
TCCAGAGCTGGTGA
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