mRNA_H-paniculata_contig816.16183.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig816.16183.1
Unique NamemRNA_H-paniculata_contig816.16183.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig816.16183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig816contigH-paniculata_contig816:10592..11021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size430
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig816.16183.1prot_H-paniculata_contig816.16183.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig816 10682..10984 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931022.7422807-UTR-H-paniculata_contig816:10591..106811622931022.7422807-UTR-H-paniculata_contig816:10591..10681Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig816 10592..10681 +
1691481554.9716723-UTR-H-paniculata_contig816:10591..106811691481554.9716723-UTR-H-paniculata_contig816:10591..10681Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig816 10592..10681 +
1622931022.799822-UTR-H-paniculata_contig816:10984..110211622931022.799822-UTR-H-paniculata_contig816:10984..11021Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig816 10985..11021 +
1691481554.9900146-UTR-H-paniculata_contig816:10984..110211691481554.9900146-UTR-H-paniculata_contig816:10984..11021Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig816 10985..11021 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931022.7657235-CDS-H-paniculata_contig816:10681..109841622931022.7657235-CDS-H-paniculata_contig816:10681..10984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig816 10682..10984 +
1691481554.9813387-CDS-H-paniculata_contig816:10681..109841691481554.9813387-CDS-H-paniculata_contig816:10681..10984Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig816 10682..10984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig816.16183.1

>prot_H-paniculata_contig816.16183.1 ID=prot_H-paniculata_contig816.16183.1|Name=mRNA_H-paniculata_contig816.16183.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MFCRRHSDRAPRVKKGGLQNPCDNSRCGVLIPGTHRFFSNLFCTKRYYVV
KKNACVREKRRIHRVDSNVEKLVGLLPPPCDYFKASDEALHSPESNPELR
*
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mRNA from alignment at H-paniculata_contig816:10592..11021+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig816.16183.1 ID=mRNA_H-paniculata_contig816.16183.1|Name=mRNA_H-paniculata_contig816.16183.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=430bp|location=Sequence derived from alignment at H-paniculata_contig816:10592..11021+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAAAATGAGGTAGGCAAACGAATAAAAGATTAAGTAAAAAAAAATGCAT
GCGCTCCCCATAAAAAAATAAATAGTGGACCCTGGGTAGGATGTTCTGTA
GGAGGCATAGTGATCGTGCCCCTCGGGTCAAAAAGGGTGGACTTCAAAAT
CCATGCGATAACAGCAGGTGTGGGGTTTTAATTCCTGGCACTCACCGTTT
TTTCTCAAACCTTTTCTGTACAAAAAGATATTACGTGGTGAAAAAAAATG
CCTGCGTAAGAGAGAAAAGAAGGATACACAGAGTCGACTCTAACGTTGAG
AAGCTAGTGGGGCTGTTGCCCCCACCGTGCGATTATTTCAAGGCAAGTGA
CGAGGCATTACACTCCCCAGAGTCGAACCCGGAGCTCCGATAGATGATTC
AGCCGCGACGGGAAAGGAGGGGGAAAGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig816:10592..11021+

>mRNA_H-paniculata_contig816.16183.1 ID=mRNA_H-paniculata_contig816.16183.1|Name=mRNA_H-paniculata_contig816.16183.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig816:10592..11021+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCTGTAGGAGGCATAGTGATCGTGCCCCTCGGGTCAAAAAGGGTGG
ACTTCAAAATCCATGCGATAACAGCAGGTGTGGGGTTTTAATTCCTGGCA
CTCACCGTTTTTTCTCAAACCTTTTCTGTACAAAAAGATATTACGTGGTG
AAAAAAAATGCCTGCGTAAGAGAGAAAAGAAGGATACACAGAGTCGACTC
TAACGTTGAGAAGCTAGTGGGGCTGTTGCCCCCACCGTGCGATTATTTCA
AGGCAAGTGACGAGGCATTACACTCCCCAGAGTCGAACCCGGAGCTCCGA
TAGATGTTCTGTAGGAGGCATAGTGATCGTGCCCCTCGGGTCAAAAAGGG
TGGACTTCAAAATCCATGCGATAACAGCAGGTGTGGGGTTTTAATTCCTG
GCACTCACCGTTTTTTCTCAAACCTTTTCTGTACAAAAAGATATTACGTG
GTGAAAAAAAATGCCTGCGTAAGAGAGAAAAGAAGGATACACAGAGTCGA
CTCTAACGTTGAGAAGCTAGTGGGGCTGTTGCCCCCACCGTGCGATTATT
TCAAGGCAAGTGACGAGGCATTACACTCCCCAGAGTCGAACCCGGAGCTC
CGATAG
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