mRNA_H-paniculata_contig8158.16180.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8158.16180.1
Unique NamemRNA_H-paniculata_contig8158.16180.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8158.16180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8158contigH-paniculata_contig8158:6247..6730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size483
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931022.5829606-CDS-H-paniculata_contig8158:6246..67291622931022.5829606-CDS-H-paniculata_contig8158:6246..6729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8158 6247..6729 +
1691481554.913137-CDS-H-paniculata_contig8158:6246..67291691481554.913137-CDS-H-paniculata_contig8158:6246..6729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8158 6247..6729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8158.16180.1prot_H-paniculata_contig8158.16180.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8158 6247..6729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8158.16180.1

>prot_H-paniculata_contig8158.16180.1 ID=prot_H-paniculata_contig8158.16180.1|Name=mRNA_H-paniculata_contig8158.16180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=161bp
GSDVTPTASTVEVDTSDISDMMEAGFLRGYAGAVVDEAAVSSGAMVAAEE
ATVVEKWTPCENTIRFLSRSMTLWRDGTREPNTASYLLVPLFLLALGYDE
LAPVGISWPPGWEVTIALVRYELWTCGFLGDGGHPPVHIPHGYIDGCIQD
VLMESLTFTGV
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mRNA from alignment at H-paniculata_contig8158:6247..6730+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8158.16180.1 ID=mRNA_H-paniculata_contig8158.16180.1|Name=mRNA_H-paniculata_contig8158.16180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=484bp|location=Sequence derived from alignment at H-paniculata_contig8158:6247..6730+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTCCGATGTGACCCCCACCGCGAGCACGGTCGAGGTCGACACGAGCGA
TATTAGTGACATGATGGAGGCGGGATTCCTTCGCGGTTATGCAGGTGCTG
TCGTGGACGAGGCAGCCGTTTCGTCGGGAGCTATGGTGGCGGCTGAAGAA
GCTACCGTGGTAGAGAAGTGGACTCCATGCGAGAACACCATACGGTTTCT
CAGTCGCTCAATGACGCTCTGGAGAGATGGCACACGCGAGCCGAACACGG
CGTCGTACTTGCTAGTACCGCTATTTCTACTTGCCCTCGGATACGACGAG
CTAGCCCCCGTGGGAATCTCGTGGCCTCCCGGCTGGGAGGTGACGATCGC
TTTAGTTCGCTACGAACTCTGGACGTGTGGTTTCTTGGGAGATGGAGGCC
ATCCTCCTGTCCACATCCCTCATGGCTATATCGATGGCTGTATACAGGAC
GTTTTGATGGAGTCCTTGACCTTCACGGGGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig8158:6247..6730+

>mRNA_H-paniculata_contig8158.16180.1 ID=mRNA_H-paniculata_contig8158.16180.1|Name=mRNA_H-paniculata_contig8158.16180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at H-paniculata_contig8158:6247..6730+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTCCGATGTGACCCCCACCGCGAGCACGGTCGAGGTCGACACGAGCGA
TATTAGTGACATGATGGAGGCGGGATTCCTTCGCGGTTATGCAGGTGCTG
TCGTGGACGAGGCAGCCGTTTCGTCGGGAGCTATGGTGGCGGCTGAAGAA
GCTACCGTGGTAGAGAAGTGGACTCCATGCGAGAACACCATACGGTTTCT
CAGTCGCTCAATGACGCTCTGGAGAGATGGCACACGCGAGCCGAACACGG
CGTCGTACTTGCTAGTACCGCTATTTCTACTTGCCCTCGGATACGACGAG
CTAGCCCCCGTGGGAATCTCGTGGCCTCCCGGCTGGGAGGTGACGATCGC
TTTAGTTCGCTACGAACTCTGGACGTGTGGTTTCTTGGGAGATGGAGGCC
ATCCTCCTGTCCACATCCCTCATGGCTATATCGATGGCTGTATACAGGAC
GTTTTGATGGAGTCCTTGACCTTCACGGGGGTAGGTTCCGATGTGACCCC
CACCGCGAGCACGGTCGAGGTCGACACGAGCGATATTAGTGACATGATGG
AGGCGGGATTCCTTCGCGGTTATGCAGGTGCTGTCGTGGACGAGGCAGCC
GTTTCGTCGGGAGCTATGGTGGCGGCTGAAGAAGCTACCGTGGTAGAGAA
GTGGACTCCATGCGAGAACACCATACGGTTTCTCAGTCGCTCAATGACGC
TCTGGAGAGATGGCACACGCGAGCCGAACACGGCGTCGTACTTGCTAGTA
CCGCTATTTCTACTTGCCCTCGGATACGACGAGCTAGCCCCCGTGGGAAT
CTCGTGGCCTCCCGGCTGGGAGGTGACGATCGCTTTAGTTCGCTACGAAC
TCTGGACGTGTGGTTTCTTGGGAGATGGAGGCCATCCTCCTGTCCACATC
CCTCATGGCTATATCGATGGCTGTATACAGGACGTTTTGATGGAGTCCTT
GACCTTCACGGGGGTA
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