mRNA_H-paniculata_contig8155.16177.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig8155.16177.1 vs. uniprot
Match: A0A6H5KZD9_9PHAE (Chloroplast protein-transporting ATPase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZD9_9PHAE) HSP 1 Score: 458 bits (1179), Expect = 7.540e-160 Identity = 255/345 (73.91%), Postives = 281/345 (81.45%), Query Frame = 1
Query: 31 MAQVTYQALFRGFPKLCGMTGTAATDSDELSNIYGLRVIQ---------------------IPTALPIARRDYPDVVFRNRVGANAAMLKEVERVHKDGRPVLIGTTNVRMSEQTAKDLEERGI----LNANPDLVERESEIVGQAGRLGLVTVATNMAGRGTDILLGGNPAVMARIRVRDALAAELLSDEELAAVPQVSEDYYPCELPEDATAALSESISVCAKSAAAVE--------GKL-SREELEALVSAACEAGPVEGDGAEAVREAAGLVKSCFQEALADEKEKV------LELGGLYVIGTARHESRRVDNQLRGRAGRQGDPGATRFFLSLDDDVFR 945
MAQVTYQALFR FPKLCGMTGTA TD++EL YGL+V+Q IPTALPIARRDYPDVVFRNR GANAAML EVER+HKDGRPVLIGTTNVRMS+QTAKDLEERG+ LNANPDLVERESEIVGQAGRLG+VTVATNMAGRGTDILLGGNP+VMARIRVRDALAAELLSDE+LAAVP+V E+++PCELPE+A++AL E+I+ C +A GKL SRE LE LVSAACEAGPVEGDGA AVREAA +K F +AL++EKEKV LELGGLYV+GTARHESRRVDNQLRGRAGRQGDPGATRFFLSLDDD+FR
Sbjct: 1 MAQVTYQALFRSFPKLCGMTGTAMTDANELGTTYGLQVVQSRARSKTSYGHPTSLLLHVLKIPTALPIARRDYPDVVFRNREGANAAMLNEVERLHKDGRPVLIGTTNVRMSDQTAKDLEERGVPCQTLNANPDLVERESEIVGQAGRLGVVTVATNMAGRGTDILLGGNPSVMARIRVRDALAAELLSDEDLAAVPKVGENFFPCELPEEASSALEEAIAACKGDSALFASDNDSSDAGKLLSREALEGLVSAACEAGPVEGDGAVAVREAATAIKKSFADALSEEKEKVNCAQVVLELGGLYVVGTARHESRRVDNQLRGRAGRQGDPGATRFFLSLDDDIFR 345
BLAST of mRNA_H-paniculata_contig8155.16177.1 vs. uniprot
Match: D8LR85_ECTSI (Protein translocase subunit SecA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR85_ECTSI) HSP 1 Score: 444 bits (1141), Expect = 2.930e-146 Identity = 243/324 (75.00%), Postives = 269/324 (83.02%), Query Frame = 1
Query: 1 GMTVSRQSQVMAQVTYQALFRGFPKLCGMTGTAATDSDELSNIYGLRVIQIPTALPIARRDYPDVVFRNRVGANAAMLKEVERVHKDGRPVLIGTTNVRMSEQTAKDLEERGILNANPDLVERESEIVGQAGRLGLVTVATNMAGRGTDILLGGNPAVMARIRVRDALAAELLSDEELAAVPQVSEDYYPCELPEDATAALSESISVCAKSAAAVEGK---------LSREELEALVSAACEAGPVEGDGAEAVREAAGLVKSCFQEALADEKEKVLELGGLYVIGTARHESRRVDNQLRGRAGRQGDPGATRFFLSLDDDVFR 945
G+TVS+QSQVMAQVTYQALFR FPKLCGMTGTA TD++EL YGL+V+Q R +PDVVFRNR GANAAML EVER+HKDGRPVLIGTTNV MS+QTAK LNANPDLVERESEIVGQAGRLG+VTVATNMAGRGTDILLGGNP+VMARIRVRDALAAELLSDE+LAAVP+V E ++PCELPEDA++AL ++I+ C +A LSRE LE LVSAACEAGPVEG GA AVREAA VK F +AL++EKEKVLELGGLYV+GTARHESRRVDNQLRGRAGRQGDPGATRFFLSLDDD+FR
Sbjct: 375 GITVSKQSQVMAQVTYQALFRSFPKLCGMTGTAMTDANELGTTYGLQVVQ--------ERLFPDVVFRNREGANAAMLNEVERLHKDGRPVLIGTTNVGMSDQTAK------TLNANPDLVERESEIVGQAGRLGVVTVATNMAGRGTDILLGGNPSVMARIRVRDALAAELLSDEDLAAVPKVGETFFPCELPEDASSALEKAIAACKGDSALFASDNDSIDAGELLSREALEGLVSAACEAGPVEGAGAVAVREAATAVKKSFADALSEEKEKVLELGGLYVVGTARHESRRVDNQLRGRAGRQGDPGATRFFLSLDDDIFR 684
BLAST of mRNA_H-paniculata_contig8155.16177.1 vs. uniprot
Match: A0A835ZJ09_9STRA (Protein translocase subunit SecA n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ09_9STRA) HSP 1 Score: 333 bits (854), Expect = 4.460e-103 Identity = 187/320 (58.44%), Postives = 232/320 (72.50%), Query Frame = 1
Query: 1 GMTVSRQSQVMAQVTYQALFRGFPKLCGMTGTAATDSDELSNIYGLRVIQIPTALPIARRDYPDVVFRNRVGANAAMLKEVERVHKD-GRPVLIGTTNVRMSEQTAKDLEERGI----LNANPDLVERESEIVGQAGRLGLVTVATNMAGRGTDILLGGNPAVMARIRVRDALAAELLSDEELAAVPQVSEDYYPCELPEDATAALSESISVCAKSAAAVEGKLSREELEALVSAACEAGPVEGDGAEAVREAAGLVKSCFQEALADEKEKVLELGGLYVIGTARHESRRVDNQLRGRAGRQGDPGATRFFLSLDDDVFR 945
G+ VS Q ++ AQVTYQ+LFR FP+L GM+GTAATD+ E N YGL V++IPTALP+ARRDYPD V+R R + A+L EVER H++ GRP+LIGTT+V MSE AK+L+ERG+ LNA P VERE+EIV QAGR G VTVATNMAGRGTDI+LGG+PAVMAR+R+R ALA L E AA+P ++ +YPC L + A AAL +++ AAA + LSR VE +A R+AA L+KS + AL +E E V GGLYV+GT+RHESRR+DNQLRGR+GRQGDPGA+RFFLSLDDD+FR
Sbjct: 424 GLEVSTQGKITAQVTYQSLFRSFPRLAGMSGTAATDAREFENTYGLLVLRIPTALPLARRDYPDAVYRTRDASLRALLGEVERQHEEEGRPILIGTTSVEMSELIAKELQERGVKCEVLNAKPGSVEREAEIVAQAGRKGRVTVATNMAGRGTDIILGGSPAVMARLRLRAALAERHLEAAERAALPAPADSFYPCALSDGAAAALEAAVA-----AAAADAPLSRGXXXXXXXXXXXXXXVEDAVTKAARKAAALIKSEYAAALKEEGETVRAAGGLYVMGTSRHESRRIDNQLRGRSGRQGDPGASRFFLSLDDDLFR 738
BLAST of mRNA_H-paniculata_contig8155.16177.1 vs. uniprot
Match: A0A7S3Y5Q6_HETAK (Protein translocase subunit SecA n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5Q6_HETAK) HSP 1 Score: 327 bits (837), Expect = 5.030e-101 Identity = 177/320 (55.31%), Postives = 231/320 (72.19%), Query Frame = 1
Query: 1 GMTVSRQSQVMAQVTYQALFRGFPKLCGMTGTAATDSDELSNIYGLRVIQIPTALPIARRDYPDVVFRNRVGANAAMLKEVERVHKDGRPVLIGTTNVRMSEQTAKDLEERGI----LNANPDLVERESEIVGQAGRLGLVTVATNMAGRGTDILLGGNPAVMARIRVRDALAAELLSDEELAAVPQVSEDYYPCELPEDATAALSESISVCAKSAAAVE-GKLSREELEALVSAACEAGPVEGDGAEAVREAAGLVKSCFQEALADEKEKVLELGGLYVIGTARHESRRVDNQLRGRAGRQGDPGATRFFLSLDDDVFR 945
G+ +++QS+V+ VTYQ+LF+ FP L GM+GTA T++ EL IY L V+Q+PTALP+ARRDY DV++R + A+L EV RVH+ G PVLIGTT+V SE A L E GI LNA P ++RE+E+V QAGR+G VTVATNMAGRGTDILLGGNPA MARI++R+ A E+ S++ELA P V +YP EL E A L+ S K A+++ G+ +++E+E L++ A EAGP AVREA +K+ + + +EKEKVL LGGLYV+GT +HESRR+DNQLRGRAGRQGDPG +RFFLSL+D+ FR
Sbjct: 413 GLAITKQSKVIGTVTYQSLFKSFPVLAGMSGTAKTEAAELEEIYELEVVQVPTALPVARRDYDDVIYRTKEAKVRALLGEVARVHELGEPVLIGTTSVEDSEAVAAQLREEGIEVAVLNAKPGNIDREAEVVAQAGRVGRVTVATNMAGRGTDILLGGNPAAMARIQLRNTFAKEVASEQELAMCPDVGPGFYPAELSEAAKGLLA---SATEKVVASMKKGEATKDEIEELITVASEAGPSSDPAVLAVREAFNTIKAEYAKPCKEEKEKVLALGGLYVLGTEKHESRRIDNQLRGRAGRQGDPGGSRFFLSLEDETFR 729
BLAST of mRNA_H-paniculata_contig8155.16177.1 vs. uniprot
Match: A0A7S2CRF3_9STRA (Chloroplast protein-transporting ATPase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CRF3_9STRA) HSP 1 Score: 298 bits (764), Expect = 2.070e-93 Identity = 173/331 (52.27%), Postives = 221/331 (66.77%), Query Frame = 1
Query: 1 GMTVSRQSQVMAQVTYQALFRGFPKLCGMTGTAATDSDELSNIYGLRVIQIPTALPIARRDYPDVVFRNRVGANAAMLKEVERVHKDGRPVLIGTTNVRMSEQTAKDLEERGIL----NANPDLVERESEIVGQAGRLGLVTVATNMAGRGTDILLGGNPAVMARIRVRDALAAELLSDE--------ELAAVPQVS---EDYYPCELPEDATAALSESISVCAKSAA-AVEGKLSREELEALVSAACEAGPVEGDGAEAVREAAGLVKSCFQEALADEKEKVLELGGLYVIGTARHESRRVDNQLRGRAGRQGDPGATRFFLSLDDDVFR 945
G+ V +SQV+A VTYQ+LFR F KLCGMTGTA +D+ E +YGL V IPTALP+ARRDYPDVVF+ + AML EV RVH+ GRPVLIGTT+V+ SE+ A L +RGIL NA P+ +RE E++ QAGR+G VTVATNMAGRGTDILLGG+ AVMA++R+RD L + DE E +A +VS + ++P L +A ++ + + + +G L ELE LVS A E P+ A+R A +K+ F + EKE V +LGGLYV+GT RHES R+D+QLRGR+GRQGDPGA+RFFLSLDD R
Sbjct: 52 GIVVGTESQVIATVTYQSLFRTFSKLCGMTGTAMSDAKEFRKVYGLPVTSIPTALPVARRDYPDVVFKTKEAKVNAMLNEVARVHEAGRPVLIGTTSVQDSEEIAGALSDRGILARVLNAKPENCDREGEVISQAGRIGAVTVATNMAGRGTDILLGGSAAVMAKLRIRDGLVSAGCVDESAEGTEGIEGSAAMKVSLMDDSFFPAPLSPNAEGGIATAAAALLSDGSDGGDGPLPLLELEELVSIAAEKAPISDPAVLAIRAAYNTIKAEFAAVVDPEKEAVRKLGGLYVVGTERHESSRIDDQLRGRSGRQGDPGASRFFLSLDDKTLR 382
BLAST of mRNA_H-paniculata_contig8155.16177.1 vs. uniprot
Match: A0A813DDY7_POLGL (Protein translocase subunit SecA (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DDY7_POLGL) HSP 1 Score: 302 bits (774), Expect = 8.490e-93 Identity = 167/323 (51.70%), Postives = 226/323 (69.97%), Query Frame = 1
Query: 1 GMTVSRQSQVMAQVTYQALFRGFPKLCGMTGTAATDSDELSNIYGLRVIQIPTALPIARRDYPDVVFRNRVGANAAMLKEVE-RVHKDGRPVLIGTTNVRMSEQTAKDLEERGI----LNANPDLVERESEIVGQAGRLGLVTVATNMAGRGTDILLGGNPAVMARIRVRDALAAELLSDEELAAVPQVSEDYYPCELPEDATAALSESISVCAKSAAAVEGKLSREELEALVSAACEAGPVEGDGAEAV---REAAGLVKSCFQEALADEKEKVLELGGLYVIGTARHESRRVDNQLRGRAGRQGDPGATRFFLSLDDDVFR 945
G+ VS +SQV AQ+TYQ+LFR FP+LC MTGTA T++ E IYGLR +PTA P+ RRDYPDV+++ A+++E+ ++GRP+L+GT+NV+MSE+ L+E G+ LNA P+ V RE+E + QAGRLG VTV+TNMAGRGTDI+LGGN + M + +R LA LL ELA VP V E++YP E+PED L+ +++ A S A E + + E + + A EA EG +A+ REA G +K F+++LA+E+ +V++ GGLYV+GT RHESRR+DNQLRGRAGRQGDPG +RFF+SL DDVFR
Sbjct: 447 GINVSVRSQVTAQITYQSLFRLFPRLCAMTGTALTEAAEFGEIYGLRGTAVPTARPMVRRDYPDVIYKTEDAKINAIVEEIVLNNQRNGRPILVGTSNVKMSERIVAQLKENGVEPQLLNARPESVARENETISQAGRLGKVTVSTNMAGRGTDIILGGNVSQMTMLNLRGRLAEALLELAELAKVPPVDEEFYPAEVPEDLERTLANAVAKIATSEIAEEMRTFLQLEELVATLAGEAPFPEGPSYDALVQLREAYGQLKQLFKDSLAEERIQVIQAGGLYVLGTTRHESRRIDNQLRGRAGRQGDPGTSRFFISLQDDVFR 769
BLAST of mRNA_H-paniculata_contig8155.16177.1 vs. uniprot
Match: W7TYL7_9STRA (Protein translocase subunit SecA n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYL7_9STRA) HSP 1 Score: 301 bits (771), Expect = 3.320e-91 Identity = 174/319 (54.55%), Postives = 223/319 (69.91%), Query Frame = 1
Query: 1 GMTVSRQSQVMAQVTYQALFRGFPKLCGMTGTAATDSDELSNIYGLRVIQIPTALPIARRDYPDVVFRNRVGANAAMLKEVERVHKDGRPVLIGTTNVRMSEQTAKDLEERGI----LNANPDLVERESEIVGQAGRLGLVTVATNMAGRGTDILLGGNPAVMARIRVRDALAAELLSDEELAAVPQVSEDYYPCELPEDATAALSESISVCAKSAAAVEGKLSREELEALVSAACEAGPVEGDGAEAVREAAGLVKSCFQEALADEKEKVLELGGLYVIGTARHESRRVDNQLRGRAGRQGDPGATRFFLSLDDDVFR 945
G+ S QSQV+A +TYQ+LFR F KL GMTGTA TD + Y L V+ IPTALP AR+DYPD +FR++ G A+L+E R HK G+P+LIGTT+V SE A L+E I LNA P+ +E+ES+IV QAGRLG VTVATNMAGRGTDILLGGNPA+MARI+++ LA +L + A + +D++P EL A + ++++ + A EG +S ++E +V+ A E PV A+R+A VK +Q+ LADEK +V LGGLYV+GT RHESRR+DNQLRGRAGRQGD GATRFFLSL+DDVFR
Sbjct: 443 GLPCSSQSQVIATITYQSLFRLFYKLAGMTGTALTDYKDFVTTYNLPVVAIPTALPNARKDYPDAIFRSKEGKLRALLRETRRAHKTGQPILIGTTSVETSELIADALQELNISCKVLNARPENIEKESQIVAQAGRLGAVTVATNMAGRGTDILLGGNPALMARIKLKLELARGVLGSQ---AGAEAMDDFFPVELSPAADQLIQAAVALAKEIGA--EG-MSLFKIEEIVAVAAENSPVTNPVLLALRDAYDEVKRQYQDVLADEKVQVKRLGGLYVLGTERHESRRIDNQLRGRAGRQGDSGATRFFLSLEDDVFR 755
BLAST of mRNA_H-paniculata_contig8155.16177.1 vs. uniprot
Match: A0A1Q9EGY9_SYMMI (Chloroplast protein-transporting ATPase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EGY9_SYMMI) HSP 1 Score: 296 bits (759), Expect = 7.710e-91 Identity = 171/325 (52.62%), Postives = 225/325 (69.23%), Query Frame = 1
Query: 1 GMTVSRQSQVMAQVTYQALFRGFPKLCGMTGTAATDSDELSNIYGLRVIQIPTALPIARRDYPDVVFRNRVGANAAMLKEVE-RVHKDGRPVLIGTTNVRMSEQTAKDLEERGI----LNANPDLVERESEIVGQAGRLGLVTVATNMAGRGTDILLGGNPAVMARIRVRDALAAELLSDEELAAVPQVSEDYYPCELPEDATAALSESISVCAKSAAA--VEGKLSREELEALVSAACEAGPVEGDGAEAV---REAAGLVKSCFQEALADEKEKVLELGGLYVIGTARHESRRVDNQLRGRAGRQGDPGATRFFLSLDDDVFR 945
+ VS +SQV AQ+TYQ+LFR FP+LC MTGTA T+S E IYGLR IPTA P+ RRDYPDVV++ A+++E+ ++GRPVLIGT NV+MSE L E G+ LNA P+ + RE+E + QAGRLG+VTV+TNMAGRGTDI+LGGN + MA + +R LA LL +E + V SE++YP ++P+D + L +++ A+ VE L EEL A V EA EG+ EA+ R+A +K+ F++ALA+EK++V++ GGLYV+GT RHESRR+DNQLRGRAGRQGDPG TRFF+SL DDVFR
Sbjct: 420 NIDVSVRSQVSAQITYQSLFRLFPRLCAMTGTALTESAEFEEIYGLRCTGIPTARPMVRRDYPDVVYKTEEAKVNAIVEEIILNNQRNGRPVLIGTANVKMSEAIVTRLREAGVEPQLLNARPESIARENETISQAGRLGMVTVSTNMAGRGTDIILGGNHSQMAALNLRSRLAEVLLDIQESSKVFNPSEEFYPTDIPDDLDSRLEKAVQAVAEKPVGKDVETFLDVEELVATVGG--EAPFEEGESKEALMGLRKAYADLKALFKDALAEEKDQVIKAGGLYVLGTTRHESRRIDNQLRGRAGRQGDPGTTRFFISLQDDVFR 742
BLAST of mRNA_H-paniculata_contig8155.16177.1 vs. uniprot
Match: A0A0G4GWG1_VITBC (Protein translocase subunit SecA n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GWG1_VITBC) HSP 1 Score: 299 bits (765), Expect = 3.560e-90 Identity = 171/324 (52.78%), Postives = 220/324 (67.90%), Query Frame = 1
Query: 1 GMTVSRQSQVMAQVTYQALFRGFPKLCGMTGTAATDSDELSNIYGLRVIQIPTALPIARRDYPDVVFRNRVGANAAMLKEVERVHKDGRPVLIGTTNVRMSEQTAKDLEERGI----LNANPDLVERESEIVGQAGRLGLVTVATNMAGRGTDILLGGNPAVMARIRVRDALA-----AELLSDEELAAVPQVSEDYYPCELPEDATAALSESISVCAKSAAAVEGKLSREELEALVSAACEAGPVEGDGAEAVREAAGLVKSCFQEALADEKEKVLELGGLYVIGTARHESRRVDNQLRGRAGRQGDPGATRFFLSLDDDVFR 945
G+ VS ++Q +A VTYQ+LFR FP+L GMTGTA TD+ E + YGL V+ IPTALP+ARRDYPD VF+ AMLKEV+R H+ GRP+LIGTT+V +SE+ L E GI LNA PD VERE++++ QAGR G VTVATNMAGRGTDI+LGGNPA MA +++R L E S +V E +YP L E+ AA+ + + + A +G +S L+ L++ A + P + D A R A +K FQ AL +E+E+V LGGLYVIGT RHESRR+DNQLRGR+GRQGD GA+RFFLS++DD+FR
Sbjct: 431 GVAVSGETQEIASVTYQSLFRLFPRLAGMTGTAFTDAKEFLDFYGLEVMPIPTALPVARRDYPDAVFKTVEAKLNAMLKEVDRAHRTGRPILIGTTSVDLSEKIQAALVESGIDAQVLNARPDSVEREAQVIAQAGRKGKVTVATNMAGRGTDIILGGNPAAMASLKLRSLLRDAIPLPEGASQNRTQQPVEVKEGFYPAPLDEELLAAVGD---LTEELRARGDGTMSERALDDLMAMAADQLPTQDDLVLAARGAFEQIKETFQTALENEQEEVRRLGGLYVIGTQRHESRRIDNQLRGRSGRQGDLGASRFFLSVEDDIFR 751
BLAST of mRNA_H-paniculata_contig8155.16177.1 vs. uniprot
Match: A0A7S1LPT9_ALECA (Chloroplast protein-transporting ATPase n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1LPT9_ALECA) HSP 1 Score: 290 bits (743), Expect = 1.140e-89 Identity = 167/324 (51.54%), Postives = 220/324 (67.90%), Query Frame = 1
Query: 1 GMTVSRQSQVMAQVTYQALFRGFPKLCGMTGTAATDSDELSNIYGLRVIQIPTALPIARRDYPDVVFRNRVGANAAMLKEVE-RVHKDGRPVLIGTTNVRMSEQTAKDLEERGI----LNANPDLVERESEIVGQAGRLGLVTVATNMAGRGTDILLGGNPAVMARIRVRDALAAELLSDEELAAVPQVSEDYYPCELPEDATAALSESISVCAKSAAAVEGK--LSREELEALVS--AACEAGPVEGDGAEAVREAAGLVKSCFQEALADEKEKVLELGGLYVIGTARHESRRVDNQLRGRAGRQGDPGATRFFLSLDDDVFR 945
G++VS +SQV AQVTYQ+LFR FP+LC MTGTA T++ E IY LR +PTA P+ RRDYPDVV++ A+++E+ ++GRP+L+GT+NV +SE L ERG+ LNA P+ V RESEI+ QAGR+G VTV+TNMAGRGTDI+LGGN + MA + VR L+ LL EE A VP V E +YP E+PE+ L ++ A E + L EEL AL+ A + GP + +REA +K F+E+L +E++ V++ GGLYV+GT RHESRR+DNQLRGRAGRQGDPG +RFF+SL D+VFR
Sbjct: 126 GISVSVRSQVSAQVTYQSLFRLFPRLCAMTGTALTEAKEFEEIYNLRGTAVPTARPMVRRDYPDVVYKTEDAKMGAIVEEIVLNNERNGRPILVGTSNVGLSELLVSRLRERGVEPQLLNARPESVSRESEIIAQAGRVGKVTVSTNMAGRGTDIILGGNHSQMAALNVRARLSDALLPLEEQARVPSVDEGFYPAEVPEELEEKLESAVDALAACERGEEAQTFLRVEELVALLGGEAPFDKGPSYAALMQ-MREAYAQLKQLFKESLEEERDAVIKCGGLYVLGTTRHESRRIDNQLRGRAGRQGDPGTSRFFISLQDEVFR 448 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8155.16177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8155.16177.1 >prot_H-paniculata_contig8155.16177.1 ID=prot_H-paniculata_contig8155.16177.1|Name=mRNA_H-paniculata_contig8155.16177.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=314bp MTVSRQSQVMAQVTYQALFRGFPKLCGMTGTAATDSDELSNIYGLRVIQIback to top mRNA from alignment at H-paniculata_contig8155:688..5893+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8155.16177.1 ID=mRNA_H-paniculata_contig8155.16177.1|Name=mRNA_H-paniculata_contig8155.16177.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5206bp|location=Sequence derived from alignment at H-paniculata_contig8155:688..5893+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8155:688..5893+ >mRNA_H-paniculata_contig8155.16177.1 ID=mRNA_H-paniculata_contig8155.16177.1|Name=mRNA_H-paniculata_contig8155.16177.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1884bp|location=Sequence derived from alignment at H-paniculata_contig8155:688..5893+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |