mRNA_H-paniculata_contig81460.16171.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig81460.16171.1
Unique NamemRNA_H-paniculata_contig81460.16171.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig81460.16171.1 vs. uniprot
Match: A0A6H5KEK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK0_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 5.780e-14
Identity = 33/60 (55.00%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    7 VRLLHVANSK*LKNMLLPGVEVCGGNAELYLEILASCPVYYAMWNNARALTQLEVTSAIP 186
            VRLLHVAN+  LK ML+PG EVCG  AELYL +  +CP+YY  W N      +E TS +P
Sbjct:   39 VRLLHVANNVQLKRMLVPGKEVCGPGAELYLRVAPTCPLYYTRWTNDVKQATVEFTSKVP 98
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BLAST of mRNA_H-paniculata_contig81460.16171.1 vs. uniprot
Match: A0A6H5KBS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS8_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 9.190e-14
Identity = 33/60 (55.00%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    7 VRLLHVANSK*LKNMLLPGVEVCGGNAELYLEILASCPVYYAMWNNARALTQLEVTSAIP 186
            VRLLHVAN+  LK ML+PG EVCG  AELYL +  +CP+YY  W N      +E TS +P
Sbjct:   39 VRLLHVANNVQLKRMLVPGKEVCGPGAELYLRVAPTCPLYYMRWTNDVKQATVEFTSKVP 98
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BLAST of mRNA_H-paniculata_contig81460.16171.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 3.130e-13
Identity = 33/60 (55.00%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    7 VRLLHVANSK*LKNMLLPGVEVCGGNAELYLEILASCPVYYAMWNNARALTQLEVTSAIP 186
            VRLLHVAN+  LK ML+PG EVCG  AELYL +  +CP+YY  W N      +E TS +P
Sbjct:  696 VRLLHVANNVQLKRMLVPGKEVCGPGAELYLRVAPTCPLYYMRWTNDVKQATVEFTSKVP 755
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BLAST of mRNA_H-paniculata_contig81460.16171.1 vs. uniprot
Match: D8LJG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG8_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.760e-8
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 1 
Query:    7 VRLLHVANSK*LKNMLLPGVEVCGGNAELYLEILASCPVYYAMWNNARALTQLEVTSAIP 186
            VRL+ VA+S  LK ML+PG E     A LY+ +  +CP YYA W ++   T  E+ S +P
Sbjct:  688 VRLIRVADSAQLKQMLVPGKEFVAPGATLYMRVAKTCPAYYARWESSDPFTHHEILSEVP 747
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BLAST of mRNA_H-paniculata_contig81460.16171.1 vs. uniprot
Match: A0A6H5KN26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN26_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.770e-8
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 1 
Query:    7 VRLLHVANSK*LKNMLLPGVEVCGGNAELYLEILASCPVYYAMWNNARALTQLEVTSAIP 186
            VRL+ VA+S  LK ML+PG E     A LY+ +  +CP YYA W ++   T  E+ S +P
Sbjct: 1091 VRLIRVADSAQLKQMLVPGKEFVAPGATLYMRVAKTCPAYYARWESSDPFTHHEILSEVP 1150
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig81460.16171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KEK0_9PHAE5.780e-1455.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBS8_9PHAE9.190e-1455.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LBJ9_9PHAE3.130e-1355.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJG8_ECTSI1.760e-843.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KN26_9PHAE1.770e-843.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig81460contigH-paniculata_contig81460:53..238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size188
Cds size138
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931020.6330135-UTR-H-paniculata_contig81460:52..1001622931020.6330135-UTR-H-paniculata_contig81460:52..100Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig81460 53..100 +
1691481553.8702617-UTR-H-paniculata_contig81460:52..1001691481553.8702617-UTR-H-paniculata_contig81460:52..100Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig81460 53..100 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931020.6464636-CDS-H-paniculata_contig81460:100..2381622931020.6464636-CDS-H-paniculata_contig81460:100..238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81460 101..238 +
1691481553.8798876-CDS-H-paniculata_contig81460:100..2381691481553.8798876-CDS-H-paniculata_contig81460:100..238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81460 101..238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig81460.16171.1prot_H-paniculata_contig81460.16171.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig81460 101..238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig81460.16171.1

>prot_H-paniculata_contig81460.16171.1 ID=prot_H-paniculata_contig81460.16171.1|Name=mRNA_H-paniculata_contig81460.16171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
MLLPGVEVCGGNAELYLEILASCPVYYAMWNNARALTQLEVTSAIP
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mRNA from alignment at H-paniculata_contig81460:53..238+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig81460.16171.1 ID=mRNA_H-paniculata_contig81460.16171.1|Name=mRNA_H-paniculata_contig81460.16171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at H-paniculata_contig81460:53..238+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCATACGTGCGCCTACTGCATGTGGCAAATAGCAAATAGCTAAAGAACAT
GCTACTCCCCGGCGTTGAGGTTTGCGGTGGGAACGCAGAGCTGTACCTGG
AGATTCTTGCTTCGTGCCCCGTATACTACGCCATGTGGAACAACGCACGT
GCATTGACGCAATTGGAGGTGACATCAGCCATACCG
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Coding sequence (CDS) from alignment at H-paniculata_contig81460:53..238+

>mRNA_H-paniculata_contig81460.16171.1 ID=mRNA_H-paniculata_contig81460.16171.1|Name=mRNA_H-paniculata_contig81460.16171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig81460:53..238+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTACTCCCCGGCGTTGAGGTTTGCGGTGGGAACGCAGAGCTGTACCT
GGAGATTCTTGCTTCGTGCCCCGTATACTACGCCATGTGGAACAACGCAC
GTGCATTGACGCAATTGGAGGTGACATCAGCCATACCGATGCTACTCCCC
GGCGTTGAGGTTTGCGGTGGGAACGCAGAGCTGTACCTGGAGATTCTTGC
TTCGTGCCCCGTATACTACGCCATGTGGAACAACGCACGTGCATTGACGC
AATTGGAGGTGACATCAGCCATACCG
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