mRNA_H-paniculata_contig81439.16168.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig81439.16168.1
Unique NamemRNA_H-paniculata_contig81439.16168.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig81439.16168.1 vs. uniprot
Match: A0A7T8G5H8_SCYLO (50S ribosomal protein L35, chloroplastic n=3 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G5H8_SCYLO)

HSP 1 Score: 109 bits (273), Expect = 5.350e-30
Identity = 57/64 (89.06%), Postives = 63/64 (98.44%), Query Frame = 1
Query:    1 MPKLKVRKAAKKRYKLIAGKRFIRRKAFKGHILEKKSPKQKRNLSKLIVVTKPDTKAIRKMLVC 192
            MPKLKVRKAAKKRYKLIAGKRFIRRKAFKGH+LEKKSPKQK+NL+KL+VV+K DTKAIRKML+C
Sbjct:   26 MPKLKVRKAAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKLVVVSKADTKAIRKMLIC 89          
BLAST of mRNA_H-paniculata_contig81439.16168.1 vs. uniprot
Match: A0A8B0R8A0_SCYLO (50S ribosomal protein L35, chloroplastic n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A8B0R8A0_SCYLO)

HSP 1 Score: 108 bits (269), Expect = 1.090e-29
Identity = 56/64 (87.50%), Postives = 62/64 (96.88%), Query Frame = 1
Query:    1 MPKLKVRKAAKKRYKLIAGKRFIRRKAFKGHILEKKSPKQKRNLSKLIVVTKPDTKAIRKMLVC 192
            MPKLKVRKAAKKRYKLIAGKRFIRRKAFKGH+LEKKSPKQK+NL+KL+VV+K DTK IRKML+C
Sbjct:    1 MPKLKVRKAAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKLVVVSKADTKTIRKMLIC 64          
BLAST of mRNA_H-paniculata_contig81439.16168.1 vs. uniprot
Match: D1J760_ECTSI (50S ribosomal protein L35, chloroplastic n=3 Tax=Ectocarpales TaxID=2877 RepID=D1J760_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.550e-29
Identity = 57/63 (90.48%), Postives = 63/63 (100.00%), Query Frame = 1
Query:    1 MPKLKVRKAAKKRYKLIAGKRFIRRKAFKGHILEKKSPKQKRNLSKLIVVTKPDTKAIRKMLV 189
            MPKLKVRK+AKKRYKLIAGKRFIRRKAFKGH+LEKKSPKQK+NL+K+IVV+KPDTKAIRKMLV
Sbjct:    1 MPKLKVRKSAKKRYKLIAGKRFIRRKAFKGHLLEKKSPKQKKNLAKVIVVSKPDTKAIRKMLV 63          
BLAST of mRNA_H-paniculata_contig81439.16168.1 vs. uniprot
Match: A0A8F0F7Q5_9PHAE (50S ribosomal protein L35 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7Q5_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.810e-28
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 1
Query:    1 MPKLKVRKAAKKRYKLIAGKRFIRRKAFKGHILEKKSPKQKRNLSKLIVVTKPDTKAIRKMLVC 192
            MPKLKVRKAAKKRYKLIAGKRF+RRKAFKGH+LEKKSPKQKRNL+  IVV K DTKAIRKMLVC
Sbjct:    1 MPKLKVRKAAKKRYKLIAGKRFVRRKAFKGHLLEKKSPKQKRNLTGNIVVKKSDTKAIRKMLVC 64          
BLAST of mRNA_H-paniculata_contig81439.16168.1 vs. uniprot
Match: A0A6B7EUY3_9PHAE (50S ribosomal protein L35 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EUY3_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 8.640e-27
Identity = 56/64 (87.50%), Postives = 59/64 (92.19%), Query Frame = 1
Query:    1 MPKLKVRKAAKKRYKLIAGKRFIRRKAFKGHILEKKSPKQKRNLSKLIVVTKPDTKAIRKMLVC 192
            MPKLKV+KAAKKRYKLIA KRFIRRKAFK HILEKKSPKQKRNLSK IVV+K DTKAI+KML C
Sbjct:    1 MPKLKVKKAAKKRYKLIAEKRFIRRKAFKSHILEKKSPKQKRNLSKSIVVSKSDTKAIKKMLGC 64          
BLAST of mRNA_H-paniculata_contig81439.16168.1 vs. uniprot
Match: A0A0R6M006_UNDPI (50S ribosomal protein L35, chloroplastic n=24 Tax=Laminariales TaxID=2886 RepID=A0A0R6M006_UNDPI)

HSP 1 Score: 99.4 bits (246), Expect = 3.520e-26
Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 1
Query:    1 MPKLKVRKAAKKRYKLIAGKRFIRRKAFKGHILEKKSPKQKRNLSKLIVVTKPDTKAIRKMLVC 192
            MPKLK RKAAKKRYKLIA KRF+RRKAFKGH+LEKKS KQKRNL+  I+V+K DTKAIRKMLVC
Sbjct:    1 MPKLKTRKAAKKRYKLIARKRFVRRKAFKGHLLEKKSAKQKRNLANTIIVSKSDTKAIRKMLVC 64          
BLAST of mRNA_H-paniculata_contig81439.16168.1 vs. uniprot
Match: A0A8F0JZ08_9PHAE (50S ribosomal protein L35 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZ08_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 8.320e-25
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 1
Query:    1 MPKLKVRKAAKKRYKLIAGKRFIRRKAFKGHILEKKSPKQKRNLSKLIVVTKPDTKAIRKMLVC 192
            MPKLK RKAA+KRYK IAGKRF+RRKAFKGH+LEKKSPKQK NL+  +VV+K DTKAIR MLVC
Sbjct:    1 MPKLKTRKAAQKRYKRIAGKRFVRRKAFKGHLLEKKSPKQKNNLANPVVVSKSDTKAIRIMLVC 64          
BLAST of mRNA_H-paniculata_contig81439.16168.1 vs. uniprot
Match: A0A8F0F748_9PHAE (50S ribosomal protein L35 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F748_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.680e-24
Identity = 51/64 (79.69%), Postives = 58/64 (90.62%), Query Frame = 1
Query:    1 MPKLKVRKAAKKRYKLIAGKRFIRRKAFKGHILEKKSPKQKRNLSKLIVVTKPDTKAIRKMLVC 192
            M KLKVRKAAKKRYKLI GKRFIR+KAFKGH+LEKKS K+KRNL+  ++V+KPDTKAIR MLVC
Sbjct:    1 MRKLKVRKAAKKRYKLITGKRFIRQKAFKGHLLEKKSTKRKRNLTNAVLVSKPDTKAIRIMLVC 64          
BLAST of mRNA_H-paniculata_contig81439.16168.1 vs. uniprot
Match: A0A2R4QPW2_9PHAE (50S ribosomal protein L35 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPW2_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.790e-23
Identity = 47/64 (73.44%), Postives = 57/64 (89.06%), Query Frame = 1
Query:    1 MPKLKVRKAAKKRYKLIAGKRFIRRKAFKGHILEKKSPKQKRNLSKLIVVTKPDTKAIRKMLVC 192
            MPKLKVRK+AKKRYKLI GK+F+R+KAFKGH+LEKK  K+KRNLS  ++V + DTKAI+KMLVC
Sbjct:    1 MPKLKVRKSAKKRYKLIKGKKFVRQKAFKGHLLEKKCSKRKRNLSSRVIVNQSDTKAIKKMLVC 64          
BLAST of mRNA_H-paniculata_contig81439.16168.1 vs. uniprot
Match: A0A141BSE4_9PHAE (50S ribosomal protein L35, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSE4_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 4.640e-22
Identity = 48/64 (75.00%), Postives = 55/64 (85.94%), Query Frame = 1
Query:    1 MPKLKVRKAAKKRYKLIAGKRFIRRKAFKGHILEKKSPKQKRNLSKLIVVTKPDTKAIRKMLVC 192
            MPKLKV+KAAKKRYK I  K+FIRRKAFKGH+L+KKS KQKRNLS  I+V+  D K+IRKMLVC
Sbjct:    1 MPKLKVKKAAKKRYKTIKAKKFIRRKAFKGHLLQKKSSKQKRNLSTQIIVSYSDIKSIRKMLVC 64          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig81439.16168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7T8G5H8_SCYLO5.350e-3089.0650S ribosomal protein L35, chloroplastic n=3 Tax=S... [more]
A0A8B0R8A0_SCYLO1.090e-2987.5050S ribosomal protein L35, chloroplastic n=2 Tax=S... [more]
D1J760_ECTSI1.550e-2990.4850S ribosomal protein L35, chloroplastic n=3 Tax=E... [more]
A0A8F0F7Q5_9PHAE1.810e-2889.0650S ribosomal protein L35 n=2 Tax=Laminariales Tax... [more]
A0A6B7EUY3_9PHAE8.640e-2787.5050S ribosomal protein L35 n=1 Tax=Cladosiphon okam... [more]
A0A0R6M006_UNDPI3.520e-2682.8150S ribosomal protein L35, chloroplastic n=24 Tax=... [more]
A0A8F0JZ08_9PHAE8.320e-2579.6950S ribosomal protein L35 n=1 Tax=Desmarestia acul... [more]
A0A8F0F748_9PHAE1.680e-2479.6950S ribosomal protein L35 n=1 Tax=Protohalopteris ... [more]
A0A2R4QPW2_9PHAE2.790e-2373.4450S ribosomal protein L35 n=3 Tax=Fucaceae TaxID=3... [more]
A0A141BSE4_9PHAE4.640e-2275.0050S ribosomal protein L35, chloroplastic n=14 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig81439contigH-paniculata_contig81439:329..520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue1.9e-21
Seed eggNOG ortholog2880.D1J760
Preferred namerpl35
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Ribosomal protein L35
EggNOG OGs2E9KB@1,2SFXQ@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size192
Cds size192
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931020.4815626-CDS-H-paniculata_contig81439:328..5201622931020.4815626-CDS-H-paniculata_contig81439:328..520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81439 329..520 +
1691481553.8268917-CDS-H-paniculata_contig81439:328..5201691481553.8268917-CDS-H-paniculata_contig81439:328..520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81439 329..520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig81439.16168.1prot_H-paniculata_contig81439.16168.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig81439 329..520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig81439.16168.1

>prot_H-paniculata_contig81439.16168.1 ID=prot_H-paniculata_contig81439.16168.1|Name=mRNA_H-paniculata_contig81439.16168.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MPKLKVRKAAKKRYKLIAGKRFIRRKAFKGHILEKKSPKQKRNLSKLIVV
TKPDTKAIRKMLVC
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mRNA from alignment at H-paniculata_contig81439:329..520+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig81439.16168.1 ID=mRNA_H-paniculata_contig81439.16168.1|Name=mRNA_H-paniculata_contig81439.16168.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=192bp|location=Sequence derived from alignment at H-paniculata_contig81439:329..520+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAAAATTGAAAGTAAGAAAAGCTGCAAAAAAACGTTATAAACTTAT TGCGGGGAAACGGTTCATTAGACGCAAAGCTTTTAAGGGTCATATTTTAG AAAAAAAATCTCCCAAACAAAAACGAAATTTATCAAAACTTATTGTGGTT ACTAAACCAGACACAAAAGCAATAAGAAAAATGTTGGTTTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig81439:329..520+

>mRNA_H-paniculata_contig81439.16168.1 ID=mRNA_H-paniculata_contig81439.16168.1|Name=mRNA_H-paniculata_contig81439.16168.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig81439:329..520+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAAAATTGAAAGTAAGAAAAGCTGCAAAAAAACGTTATAAACTTAT
TGCGGGGAAACGGTTCATTAGACGCAAAGCTTTTAAGGGTCATATTTTAG
AAAAAAAATCTCCCAAACAAAAACGAAATTTATCAAAACTTATTGTGGTT
ACTAAACCAGACACAAAAGCAATAAGAAAAATGTTGGTTTGTATGCCAAA
ATTGAAAGTAAGAAAAGCTGCAAAAAAACGTTATAAACTTATTGCGGGGA
AACGGTTCATTAGACGCAAAGCTTTTAAGGGTCATATTTTAGAAAAAAAA
TCTCCCAAACAAAAACGAAATTTATCAAAACTTATTGTGGTTACTAAACC
AGACACAAAAGCAATAAGAAAAATGTTGGTTTGT
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