mRNA_H-paniculata_contig814.16160.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig814.16160.1 vs. uniprot
Match: A0A6H5KXE1_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXE1_9PHAE) HSP 1 Score: 454 bits (1169), Expect = 1.510e-154 Identity = 235/346 (67.92%), Postives = 279/346 (80.64%), Query Frame = 2
Query: 86 MLGLRYSTRRSGAVLAVAGGAGGCLY--SYNNSNAQQRSALCEAPIIAPVALKEVAQRLGAYVKALDQDDVITLRTEKEKVKIYGIRDEARHKAAGGLPVVRAAQTIIKAPVDEVALCWWQAGRRKEWDSVNTQDSEMVRSLDTTKRLVYLQGKPKKGGIVSSRDFCYVMYRAPPEMIGAKTGSVLFVQANNADGVPPNKASTRGDVNSLLLLEPIDPITTKASYAIEVDVKGWLPVKVVKAAADETPLTLAVMRDHLEQELSEEASLSPEAAAKHALHRRESHESAGQG-AIAGAWATKKDLLATKQLLENQLKKVTADERKTGLDLSTLRTKIKKELAEVERRL 1114
M GL RR LAVAGGA C+ +Y + + Q++ ALC+AP +K VAQRLGAYV+ ++ D ITLR K VK+Y + D+A HKAAGGLPVVR AQ +IKAPVD+VALCWWQAGRRKEWDSVNT DS++VRSL RLVY+QGKPK+GG++SSRDFCYV ++AP E++GAK GS LFVQAN A+ VP N ASTRGDVNS+LLL P+DPITT+A YAIE+DVKGWLPVKVVKAAADE PLTLAV+RDH+E+ELSEEASLSPEAAAKHA+HRRE E G +IAGAWAT++DLL TK+LLE QLKKV+ADERK G+DLS LR IK+E+AEV+RRL
Sbjct: 1 MFGLTQVARRPAVALAVAGGASACMLRNTYLDKSEQEQGALCQAPNAPQSGMKGVAQRLGAYVQNIEDPDKITLRANKLGVKVYDVVDQAAHKAAGGLPVVRVAQALIKAPVDDVALCWWQAGRRKEWDSVNTSDSQLVRSLAPDARLVYMQGKPKRGGMISSRDFCYVSHKAPLELVGAKPGSTLFVQANAANEVPLNNASTRGDVNSVLLLVPVDPITTRAYYAIEMDVKGWLPVKVVKAAADEIPLTLAVLRDHIEKELSEEASLSPEAAAKHAVHRREDSEGKSGGESIAGAWATREDLLETKKLLEKQLKKVSADERKMGIDLSELRKHIKEEIAEVDRRL 346
BLAST of mRNA_H-paniculata_contig814.16160.1 vs. uniprot
Match: D8LQJ8_ECTSI (START domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ8_ECTSI) HSP 1 Score: 353 bits (907), Expect = 2.250e-116 Identity = 172/246 (69.92%), Postives = 207/246 (84.15%), Query Frame = 2
Query: 167 YNNSNAQQRSALCEAPIIAPVALKEVAQRLGAYVKALDQDDVITLRTEKEKVKIYGIRDEARHKAAGGLPVVRAAQTIIKAPVDEVALCWWQAGRRKEWDSVNTQDSEMVRSLDTTKRLVYLQGKPKKGGIVSSRDFCYVMYRAPPEMIGAKTGSVLFVQANNADGVPPNKASTRGDVNSLLLLEPIDPITTKASYAIEVDVKGWLPVKVVKAAADETPLTLAVMRDHLEQELSEEASLSPEAAAK 904
Y + + + + ALC+AP +K VAQRLGAYV+ ++ D ITLR +K VK+Y + D+A HKAAGGLPVVR AQ +IKAPV++VALCWWQAGRRKEWDSVNT DS++VRSL RLVY+QGKPK+GG++SSRDFCYV ++AP E++GAK GS LFVQAN A+ VPPN ASTRGDVNS+LLL P+DPITT+A YAIE+DVKGWLPVKVVKAAADE PLTLAV+RDH+E+ELS+EASLSPEAAAK
Sbjct: 6 YLDKSERDQGALCQAPNAPQSGMKGVAQRLGAYVQNIEDSDKITLRADKLGVKVYDVVDQAAHKAAGGLPVVRVAQALIKAPVEDVALCWWQAGRRKEWDSVNTSDSQLVRSLAPDARLVYMQGKPKRGGMISSRDFCYVSHKAPLELVGAKPGSTLFVQANAANEVPPNNASTRGDVNSVLLLVPVDPITTRAYYAIEMDVKGWLPVKVVKAAADEIPLTLAVLRDHIEKELSDEASLSPEAAAK 251
BLAST of mRNA_H-paniculata_contig814.16160.1 vs. uniprot
Match: A0A835YTY3_9STRA (START domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTY3_9STRA) HSP 1 Score: 278 bits (711), Expect = 7.480e-87 Identity = 137/226 (60.62%), Postives = 168/226 (74.34%), Query Frame = 2
Query: 194 SALCEAPIIAPVALKEVAQRLGAYV---KALDQDDVITLRTEKEKVKIYGIRDEARHKAAGGLPVVRAAQTIIKAPVDEVALCWWQAGRRKEWDSVNTQDSEMVRSLDTTKRLVYLQGKPKKGGIVSSRDFCYVMYRAPPEMIGAKTGSVLFVQANNADGVPPNKASTRGDVNSLLLLEPIDPITTKASYAIEVDVKGWLPVKVVKAAADETPLTLAVMRDHLEQE 862
+A C+AP ++K V RLG V L+ V+T RT+ V IY + +EA H AGGLPVVR A+ +IKAPV EVA WW RK+WDSVNTQD ++V++L T +RLVYLQGKPK+GG++SSRDF YVM+R P + +GA+TGS LF+Q N A VP N +S RGDVNSLLLLEP+D TT+A YAIE+DVKGWLP KVV AAADETPLTLAVMRDHLE++
Sbjct: 36 AAACDAP---GASVKSVTARLGRLVVDVPTLEATKVLTRRTDLNGVTIYSVTNEAAHSKAGGLPVVRVAEAVIKAPVAEVAALWWHVQSRKDWDSVNTQDCQLVKALGTDERLVYLQGKPKRGGVISSRDFAYVMHRVPAQELGARTGSALFIQTNTASEVPANSSSVRGDVNSLLLLEPLDATTTRARYAIEIDVKGWLPTKVVNAAADETPLTLAVMRDHLERQ 258
BLAST of mRNA_H-paniculata_contig814.16160.1 vs. uniprot
Match: A0A4D9DBA7_9STRA (START domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DBA7_9STRA) HSP 1 Score: 199 bits (507), Expect = 7.670e-55 Identity = 116/308 (37.66%), Postives = 173/308 (56.17%), Query Frame = 2
Query: 206 EAPIIAPVALKEVAQRLGAYVKALDQDDVITLRTEKEKVKIYGIR-----DEARHKAAGGLPVVRAAQTIIKAPVDEVALCWWQAGRRKEWDSVNTQDSEMVRSLDTTKRLVYLQGKPKKGGIVSSRDFCYVMYRAPPEMIGAKTGSVLFVQANNADGVPPNKASTRGDVNSLLLLEPIDPITTKASYAIEVDVKGWLPVKVVKAAADETPLTLAVMRDHLEQELSEEASLSPEAAAKHALHRRESHESAGQGAIAGAWATKKDLLATKQLLENQLKKVTADERKTGLDLSTLRTKIKKELAEVERRL 1114
+ P P + R+ Y ++V + EK VKIY ++ D A GLPV R + +I AP+++VA WW R WD VNT SE+V RLVY++G PK ++SSRDF +V ++ P +G G+ FVQ N A+ +P N + RG++NS++LLEP+D TT+ Y E++ KGWLP V+AAAD+ P L VM+ HLE E +E+A EA + RE + + A+++DLLA K+LL+ +L++ DE+K L L+ L++KI+ +L +VE RL
Sbjct: 100 QQPATDPADTDSIVFRMQKYFTTASLEEVAKFKKEKAGVKIYTVKEGSIPDPAIGGRKTGLPVARIGEAVINAPLEQVATLWWVFNGRILWDKVNTLASEVVEEYKNA-RLVYIKGTPKP--MISSRDFVFVSHKVPAGDLGGSFGAQAFVQTNAANSLPENSGAVRGNINSIILLEPVDGYTTRVRYVCEIEPKGWLPTMAVEAAADDLPGVLGVMKAHLESEATEDA----EALVRRRASLREKDHTHPL-LVDSVTASREDLLALKKLLQTKLEEAKRDEKKLNLSLAELKSKIQNDLKKVEARL 399
BLAST of mRNA_H-paniculata_contig814.16160.1 vs. uniprot
Match: W7TWL2_9STRA (Lipid-binding START n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWL2_9STRA) HSP 1 Score: 135 bits (341), Expect = 1.380e-33 Identity = 75/186 (40.32%), Postives = 116/186 (62.37%), Query Frame = 2
Query: 557 IVSSRDFCYVMYRAPPEMIGAKTGSVLFVQANNADGVPPNKASTRGDVNSLLLLEPIDPITTKASYAIEVDVKGWLPVKVVKAAADETPLTLAVMRDHLEQELSEEASLSPEAAAKHALHRRESHESAGQGAIAGAWATKKDLLATKQLLENQLKKVTADERKTGLDLSTLRTKIKKELAEVERRL 1114
++SSRDF +V ++ P +G G+ FVQ N A+ +P N + RG++NS++LLEP+D TT+ Y E++ KGWLP V+AAAD+ P L VM+ HLE E +E+A EA + RE + + A+++DLLA K+LL+ +L++ DE+K L L+ L++KI+ +L +VE RL
Sbjct: 1 MISSRDFVFVSHKVPAGDLGGSFGAQAFVQTNAANTLPENSGAVRGNINSIILLEPVDGYTTRVRYVCEIEPKGWLPTMAVEAAADDLPGVLGVMKAHLESEATEDA----EALVRRRASLREKDHTHPL-LVDSVTASREDLLALKKLLQTKLEEAKRDEKKLNLSLAELKSKIQNDLKKVEARL 181
BLAST of mRNA_H-paniculata_contig814.16160.1 vs. uniprot
Match: A0A1Y1Y381_9FUNG (Bet v1-like protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y381_9FUNG) HSP 1 Score: 57.8 bits (138), Expect = 1.720e-5 Identity = 54/212 (25.47%), Postives = 96/212 (45.28%), Query Frame = 2
Query: 230 ALKEVAQRLGAYVKALDQDDVITLRTEKEKVKIYGIRDEARHKAAGGLPVVRAAQTIIKAPVDEVALCWWQAGRRKEWDSVNTQDSEMVRSLDTTKRLVYLQGKPKKGGIVSSRDFCYVM-YRAPPEMIGAKTGSVLFVQANNADGVPPNKASTRGDVN-SLLLLEPIDPITTKASYAIEVDVKGWLPVKVVKAAADETPLTLAVMRDHLEQ 859
A + +++ + +LD T +E + +KIY + K G +P VR + V ++A G R WD +E + L+ T + + K VS RD C V Y PE + +G V + VP K + R D++ +++ + KA+Y I++D+KG +P +V+ + +TPL +A + D L++
Sbjct: 6 AANQAIEKIKQFGNSLDG---WTFHSENKGIKIY-----TQEKEKGAMPAVRGEGILEGYSVHQIAAVAESIGCRPLWDG-RFGGAERIEFLEDTTFVFWNLNKGTWP--VSDRDLCGVCKYETSPEGV-YYSGLTSVVDSR----VPEKKGAVRADLHIGGWIIQKEGENSVKATYIIDIDLKGSIPGPIVRKVSVDTPLCVAYVFDFLKK 201 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig814.16160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig814.16160.1 >prot_H-paniculata_contig814.16160.1 ID=prot_H-paniculata_contig814.16160.1|Name=mRNA_H-paniculata_contig814.16160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=344bp MLGLRYSTRRSGAVLAVAGGAGGCLYSYNNSNAQQRSALCEAPIIAPVALback to top mRNA from alignment at H-paniculata_contig814:13364..20548- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig814.16160.1 ID=mRNA_H-paniculata_contig814.16160.1|Name=mRNA_H-paniculata_contig814.16160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7185bp|location=Sequence derived from alignment at H-paniculata_contig814:13364..20548- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig814:13364..20548- >mRNA_H-paniculata_contig814.16160.1 ID=mRNA_H-paniculata_contig814.16160.1|Name=mRNA_H-paniculata_contig814.16160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2064bp|location=Sequence derived from alignment at H-paniculata_contig814:13364..20548- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |