mRNA_H-paniculata_contig8136.16154.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8136.16154.1
Unique NamemRNA_H-paniculata_contig8136.16154.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8136.16154.1 vs. uniprot
Match: D8LI43_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI43_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 5.020e-27
Identity = 75/199 (37.69%), Postives = 98/199 (49.25%), Query Frame = 1 
Query:    1 HTLQWLDLSSHLRMRETCLFYSKRVPSLATTLTIGNCRSARRCLETVF---RNSHIRVITADLSCQPSSSLRRRM----------YDELVESHIDDPTLAP-------LIMHYRPREFRVTSMVSGVHFSDALHALEVNLTSAREHLRVVQLELVTGGPRPYQDALAHQECMGRLVRVLVKDAVGEQAGAAVGAGGGSS 537
            H LQWLDL+SHLR+RE   F     P   TTL       ARRC   +F   + + +  IT D++   S S   +           ++    S +D+ + A        LI  +RP E R  +MV G  FS+AL +LE+N+   RE L V+   L  GGPRPYQD  +H  CM RL R+L     G    AAVG  GG S
Sbjct:   11 HILQWLDLASHLRLREASTFDRDETPRRTTTLAARGSEQARRCQLVIFTPDKKTRLHSITLDVTAPSSGSSSSKCGMEPTQHLSSFNSSFSSFLDEASCAKRRNSLPLLIREHRPAEIRFKNMVRGREFSEALRSLELNIDQVRESLCVLDFGLTAGGPRPYQDPRSHHWCMLRLRRLL-----GPAPLAAVGGAGGGS 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8136.16154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LI43_ECTSI5.020e-2737.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8136contigH-paniculata_contig8136:247..783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_003160.1
Exons1
Model size537
Cds size537
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931018.987683-CDS-H-paniculata_contig8136:246..7831622931018.987683-CDS-H-paniculata_contig8136:246..783Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8136 247..783 -
1691481553.1222897-CDS-H-paniculata_contig8136:246..7831691481553.1222897-CDS-H-paniculata_contig8136:246..783Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8136 247..783 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8136.16154.1prot_H-paniculata_contig8136.16154.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8136 247..783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8136.16154.1

>prot_H-paniculata_contig8136.16154.1 ID=prot_H-paniculata_contig8136.16154.1|Name=mRNA_H-paniculata_contig8136.16154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=179bp
HTLQWLDLSSHLRMRETCLFYSKRVPSLATTLTIGNCRSARRCLETVFRN
SHIRVITADLSCQPSSSLRRRMYDELVESHIDDPTLAPLIMHYRPREFRV
TSMVSGVHFSDALHALEVNLTSAREHLRVVQLELVTGGPRPYQDALAHQE
CMGRLVRVLVKDAVGEQAGAAVGAGGGSS
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mRNA from alignment at H-paniculata_contig8136:247..783-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8136.16154.1 ID=mRNA_H-paniculata_contig8136.16154.1|Name=mRNA_H-paniculata_contig8136.16154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=537bp|location=Sequence derived from alignment at H-paniculata_contig8136:247..783- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACACCCTGCAGTGGCTCGACTTGTCGTCCCACTTGCGGATGCGCGAGAC
GTGCCTGTTCTACAGCAAACGGGTCCCAAGCCTCGCGACGACCCTCACCA
TCGGAAATTGCCGATCGGCCAGGCGATGCCTCGAAACGGTGTTTCGCAAC
AGCCACATCCGAGTCATCACGGCGGACTTATCATGCCAGCCCTCCTCCTC
TTTGCGTCGCCGCATGTACGACGAGTTGGTTGAGTCCCACATCGATGACC
CAACACTGGCGCCGCTCATAATGCACTATCGCCCGAGGGAGTTTCGCGTG
ACCAGCATGGTCAGTGGCGTTCATTTTTCCGATGCGCTTCACGCGCTGGA
GGTGAACCTAACCTCGGCACGCGAACACCTGCGCGTGGTTCAGCTGGAGC
TAGTCACGGGAGGGCCTCGACCGTACCAGGACGCCCTCGCACACCAGGAA
TGTATGGGACGGCTGGTGCGTGTGCTGGTCAAGGATGCTGTGGGCGAGCA
GGCGGGAGCGGCAGTCGGAGCAGGAGGTGGTTCTAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig8136:247..783-

>mRNA_H-paniculata_contig8136.16154.1 ID=mRNA_H-paniculata_contig8136.16154.1|Name=mRNA_H-paniculata_contig8136.16154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at H-paniculata_contig8136:247..783- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACACCCTGCAGTGGCTCGACTTGTCGTCCCACTTGCGGATGCGCGAGAC
GTGCCTGTTCTACAGCAAACGGGTCCCAAGCCTCGCGACGACCCTCACCA
TCGGAAATTGCCGATCGGCCAGGCGATGCCTCGAAACGGTGTTTCGCAAC
AGCCACATCCGAGTCATCACGGCGGACTTATCATGCCAGCCCTCCTCCTC
TTTGCGTCGCCGCATGTACGACGAGTTGGTTGAGTCCCACATCGATGACC
CAACACTGGCGCCGCTCATAATGCACTATCGCCCGAGGGAGTTTCGCGTG
ACCAGCATGGTCAGTGGCGTTCATTTTTCCGATGCGCTTCACGCGCTGGA
GGTGAACCTAACCTCGGCACGCGAACACCTGCGCGTGGTTCAGCTGGAGC
TAGTCACGGGAGGGCCTCGACCGTACCAGGACGCCCTCGCACACCAGGAA
TGTATGGGACGGCTGGTGCGTGTGCTGGTCAAGGATGCTGTGGGCGAGCA
GGCGGGAGCGGCAGTCGGAGCAGGAGGTGGTTCTAGCCACACCCTGCAGT
GGCTCGACTTGTCGTCCCACTTGCGGATGCGCGAGACGTGCCTGTTCTAC
AGCAAACGGGTCCCAAGCCTCGCGACGACCCTCACCATCGGAAATTGCCG
ATCGGCCAGGCGATGCCTCGAAACGGTGTTTCGCAACAGCCACATCCGAG
TCATCACGGCGGACTTATCATGCCAGCCCTCCTCCTCTTTGCGTCGCCGC
ATGTACGACGAGTTGGTTGAGTCCCACATCGATGACCCAACACTGGCGCC
GCTCATAATGCACTATCGCCCGAGGGAGTTTCGCGTGACCAGCATGGTCA
GTGGCGTTCATTTTTCCGATGCGCTTCACGCGCTGGAGGTGAACCTAACC
TCGGCACGCGAACACCTGCGCGTGGTTCAGCTGGAGCTAGTCACGGGAGG
GCCTCGACCGTACCAGGACGCCCTCGCACACCAGGAATGTATGGGACGGC
TGGTGCGTGTGCTGGTCAAGGATGCTGTGGGCGAGCAGGCGGGAGCGGCA
GTCGGAGCAGGAGGTGGTTCTAGC
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