mRNA_H-paniculata_contig81331.16151.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig81331.16151.1
Unique NamemRNA_H-paniculata_contig81331.16151.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig81331.16151.1 vs. uniprot
Match: A0A8F0FDI2_9PHAE (Ribosomal protein S11 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FDI2_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 4.960e-38
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = 1
Query:    1 MGLLIAQKIQDLKYTKISIVLRGLGINRKAIIKGLERSGFIIDKLIDITLSPHNGCRLAKVRRKKFRTKVSYKSANK 231
            MGLL+AQKIQD KYTKISI LRGLG+NRKAI+KGLE SGFIIDKL+D+TLSPHNGCRLAKVRRKKFRTKVSYK+ NK
Sbjct:   70 MGLLMAQKIQDFKYTKISIFLRGLGLNRKAIVKGLECSGFIIDKLMDMTLSPHNGCRLAKVRRKKFRTKVSYKNVNK 146          
BLAST of mRNA_H-paniculata_contig81331.16151.1 vs. uniprot
Match: A0A4Y5T8E1_9PHAE (Ribosomal protein S11 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T8E1_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.220e-18
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 1
Query:   19 QKIQDLKYTKISIVLRGLGINRKAIIKGLERSGFIIDKLIDITLSPHNGCRLAKVRRKKFRTKVSYK 219
            Q++ DLKY ++S+VLRGLG+ R  +I  L  SG  +  + D TLSPHNGCR  KVRRKKFRT+VS+K
Sbjct:   58 QRLIDLKYVRVSVVLRGLGVGRGVVINSLRNSGLHLHTIKDTTLSPHNGCRPPKVRRKKFRTRVSFK 124          
BLAST of mRNA_H-paniculata_contig81331.16151.1 vs. uniprot
Match: Q2TUB4_DICDH (Ribosomal protein S11 n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TUB4_DICDH)

HSP 1 Score: 70.5 bits (171), Expect = 2.330e-13
Identity = 33/68 (48.53%), Postives = 51/68 (75.00%), Query Frame = 1
Query:   19 QKIQDLKYTKISIVLRGLGINRKAIIKGLERSGFIIDKLIDITLSPHNGCRLAKVRRKKFRTKVSYKS 222
            +KIQ+L YT +S++LRGLG++R A+I  +      ++++ D TLS HNGCR +K RRKK RT++S+K+
Sbjct:   63 RKIQELGYTDVSLMLRGLGVSRVALIHVIRDYNLKLNRITDETLSSHNGCRPSKQRRKKIRTRISFKT 130          
BLAST of mRNA_H-paniculata_contig81331.16151.1 vs. uniprot
Match: A0A8F0FC71_9PHAE (Ribosomal protein S11 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FC71_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.930e-10
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 1
Query:    1 MGLLIAQKIQDLKYTKISIVLRGLGINRKAIIKGLERSGFIIDKLIDITLSPHNGCRLAKVRRKKFRTKV 210
            +G L+A+K  DL Y ++ I L G+   + AII+   +    ID ++ +T +PHNGCR AKVRRKKFR+KV
Sbjct:  110 LGRLLAKKTIDLGYKELIIYLTGMNKGQLAIIRSFSKVELEIDSIVLVTSNPHNGCRPAKVRRKKFRSKV 179          
BLAST of mRNA_H-paniculata_contig81331.16151.1 vs. uniprot
Match: Q2TUF3_9PHAE (Ribosomal protein S11 n=1 Tax=Desmarestia viridis TaxID=62313 RepID=Q2TUF3_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 7.450e-10
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    1 MGLLIAQKIQDLKYTKISIVLRGLGINRKAIIKGLERSGFIIDKLIDITLSPHNGCRLAKVRRKKFRTKV 210
            +G L+AQK   L Y ++ I L G+   + AII+   +    ID ++ +T +PHNGCR AKVRRKKFR+KV
Sbjct:   90 LGRLLAQKTIALGYKELIIYLTGMNKGQLAIIRSFSKVEIDIDSIVLLTRNPHNGCRPAKVRRKKFRSKV 159          
BLAST of mRNA_H-paniculata_contig81331.16151.1 vs. uniprot
Match: A0A8F0FCJ6_9PHAE (Ribosomal protein S11 n=1 Tax=Pelagophycus porra TaxID=50953 RepID=A0A8F0FCJ6_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.990e-7
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    1 MGLLIAQKIQDLKYTKISIVLR-GLGINRKAIIKGL-ERSGFIIDKLIDITLSPHNGCRLAKVRRKKFRTK 207
            +G L+  K  +L YT+ +I LR G+   R+ ++KGL ++ G  I  L   T   HNGCR AKVRRKKFRTK
Sbjct:   77 LGNLVGDKAIELGYTEFTIFLRSGINKGRRGVVKGLSKKKGIKITFLYLNTCYTHNGCRPAKVRRKKFRTK 147          
BLAST of mRNA_H-paniculata_contig81331.16151.1 vs. uniprot
Match: Q2TUJ5_FUCVE (Ribosomal protein S11 n=3 Tax=Fucus TaxID=3011 RepID=Q2TUJ5_FUCVE)

HSP 1 Score: 54.3 bits (129), Expect = 8.240e-7
Identity = 29/70 (41.43%), Postives = 38/70 (54.29%), Query Frame = 1
Query:    1 MGLLIAQKIQDLKYTKISIVLRGLGINRKAIIKGLERSGFIIDKLIDITLSPHNGCRLAKVRRKKFRTKV 210
            +G     K+  L Y KI +   G    R  +++ L ++G  I   + IT   HNGCR AK RRKKFRTKV
Sbjct:  107 LGKFFGSKVVSLGYKKILLYFTGSNKGRSGVLRSLSKTGIKIYSTVLITQKAHNGCRPAKNRRKKFRTKV 176          
BLAST of mRNA_H-paniculata_contig81331.16151.1 vs. uniprot
Match: A0A5P8DJX1_9EUKA (Ribosomal protein S11 n=1 Tax=Telonemida sp. TaxID=2652706 RepID=A0A5P8DJX1_9EUKA)

HSP 1 Score: 52.8 bits (125), Expect = 1.290e-6
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 1
Query:   13 IAQKIQDLKYTKISIVLRGLGINRKAIIKGLERSGFIIDKLIDITLSPHNGCRLAKVRR 189
            +  K+  L Y+KI I ++G G  R++ I G   S  +I ++ID+T  PHNGCR  K RR
Sbjct:   65 VVSKLTSLGYSKIIIQVKGFGRGRESAIYGFSSSTLVIQRVIDVTPKPHNGCRPKKSRR 123          
BLAST of mRNA_H-paniculata_contig81331.16151.1 vs. uniprot
Match: A0A4D6E527_9PHAE (Ribosomal protein S11 n=1 Tax=Macrocystis integrifolia TaxID=169774 RepID=A0A4D6E527_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 5.070e-6
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 1
Query:    1 MGLLIAQKIQDLKYTKISIVLR-GLGINRKAIIKGL-ERSGFIIDKLIDITLSPHNGCRLAKVRRKKFRTK 207
            +G LI  K   L Y + +I+LR G+   R+ ++KGL ++ G  I  L   T   HNGCR AK RRKKFRTK
Sbjct:   90 LGNLIGDKAIKLGYKEFTILLRSGINKGRRGVVKGLSKKKGIKITFLYLSTCYTHNGCRPAKARRKKFRTK 160          
BLAST of mRNA_H-paniculata_contig81331.16151.1 vs. uniprot
Match: Q94Z02_PYLLI (Ribosomal protein S11 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z02_PYLLI)

HSP 1 Score: 50.4 bits (119), Expect = 1.660e-5
Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 1
Query:    1 MGLLIAQKIQDLKYTKISIVLRGLGIN--RKAIIKGLERSGFIIDKLIDITLSPHNGCRLAKVRRKKFRTK 207
            +G L   KI +L YT++ I L   GIN  RK ++KG+      I  +  I   PHNGCR AK+RRKK RTK
Sbjct:   82 LGQLFGDKIIELGYTEVYIYL-DYGINKARKGVVKGIGEKKIKISFIRLIKGYPHNGCRPAKLRRKKVRTK 151          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig81331.16151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A8F0FDI2_9PHAE4.960e-3887.01Ribosomal protein S11 n=1 Tax=Protohalopteris sp. ... [more]
A0A4Y5T8E1_9PHAE2.220e-1858.21Ribosomal protein S11 n=1 Tax=Dictyopteris divaric... [more]
Q2TUB4_DICDH2.330e-1348.53Ribosomal protein S11 n=1 Tax=Dictyota dichotoma T... [more]
A0A8F0FC71_9PHAE1.930e-1047.14Ribosomal protein S11 n=1 Tax=Desmarestia aculeata... [more]
Q2TUF3_9PHAE7.450e-1047.14Ribosomal protein S11 n=1 Tax=Desmarestia viridis ... [more]
A0A8F0FCJ6_9PHAE1.990e-747.89Ribosomal protein S11 n=1 Tax=Pelagophycus porra T... [more]
Q2TUJ5_FUCVE8.240e-741.43Ribosomal protein S11 n=3 Tax=Fucus TaxID=3011 Rep... [more]
A0A5P8DJX1_9EUKA1.290e-642.37Ribosomal protein S11 n=1 Tax=Telonemida sp. TaxID... [more]
A0A4D6E527_9PHAE5.070e-646.48Ribosomal protein S11 n=1 Tax=Macrocystis integrif... [more]
Q94Z02_PYLLI1.660e-546.48Ribosomal protein S11 n=1 Tax=Pylaiella littoralis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig81331contigH-paniculata_contig81331:123..467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size297
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931018.7418783-CDS-H-paniculata_contig81331:122..1881622931018.7418783-CDS-H-paniculata_contig81331:122..188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81331 123..188 -
1691481552.9963202-CDS-H-paniculata_contig81331:122..1881691481552.9963202-CDS-H-paniculata_contig81331:122..188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81331 123..188 -
1622931018.7647684-CDS-H-paniculata_contig81331:236..4671622931018.7647684-CDS-H-paniculata_contig81331:236..467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81331 237..467 -
1691481553.008701-CDS-H-paniculata_contig81331:236..4671691481553.008701-CDS-H-paniculata_contig81331:236..467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81331 237..467 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig81331.16151.1prot_H-paniculata_contig81331.16151.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig81331 123..467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig81331.16151.1

>prot_H-paniculata_contig81331.16151.1 ID=prot_H-paniculata_contig81331.16151.1|Name=mRNA_H-paniculata_contig81331.16151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
MGLLIAQKIQDLKYTKISIVLRGLGINRKAIIKGLERSGFIIDKLIDITL
SPHNGCRLAKVRRKKFRTKVSYKSANKWQIVNLLVFAIVGSNPTFFYP*
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mRNA from alignment at H-paniculata_contig81331:123..467-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig81331.16151.1 ID=mRNA_H-paniculata_contig81331.16151.1|Name=mRNA_H-paniculata_contig81331.16151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at H-paniculata_contig81331:123..467- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGATTGCTTATTGCTCAAAAGATTCAAGATTTAAAATATACTAAAAT TTCAATTGTTTTACGTGGTTTAGGTATAAACCGTAAAGCTATTATTAAAG GTTTAGAACGCTCAGGTTTTATTATCGATAAGTTAATAGATATTACTTTA TCCCCGCACAACGGATGCCGTTTAGCTAAAGTAAGACGAAAAAAATTTCG TACTAAAGTTAGCTATAAAAGTGCAAATAAAGTTGTTGGTATTTAATTTT TAAAGAAGGAGTGACTGAGTGGTTAAAAGTGGCAGATTGTAAATCTGTTG GTTTTTGCCATCGTAGGTTCGAATCCTACCTTCTTCTACCCTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig81331:123..467-

>mRNA_H-paniculata_contig81331.16151.1 ID=mRNA_H-paniculata_contig81331.16151.1|Name=mRNA_H-paniculata_contig81331.16151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig81331:123..467- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGATTGCTTATTGCTCAAAAGATTCAAGATTTAAAATATACTAAAAT
TTCAATTGTTTTACGTGGTTTAGGTATAAACCGTAAAGCTATTATTAAAG
GTTTAGAACGCTCAGGTTTTATTATCGATAAGTTAATAGATATTACTTTA
TCCCCGCACAACGGATGCCGTTTAGCTAAAGTAAGACGAAAAAAATTTCG
TACTAAAGTTAGCTATAAAAGTGCAAATAAAATGGGATTGCTTATTGCTC
AAAAGATTCAAGATTTAAAATATACTAAAATTTCAATTGTTTTACGTGGT
TTAGGTATAAACCGTAAAGCTATTATTAAAGGTTTAGAACGCTCAGGTTT
TATTATCGATAAGTTAATAGATATTACTTTATCCCCGCACAACGGATGCC
GTTTAGCTAAAGTAAGACGAAAAAAATTTCGTACTAAAGTTAGCTATAAA
AGTGCAAATAAATGGCAGATTGTAAATCTGTTGGTTTTTGCCATCGTAGG
TTCGAATCCTACCTTCTTCTACCCTTAATGGCAGATTGTAAATCTGTTGG
TTTTTGCCATCGTAGGTTCGAATCCTACCTTCTTCTACCCTTAA
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