mRNA_H-paniculata_contig8133.16150.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8133.16150.1
Unique NamemRNA_H-paniculata_contig8133.16150.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8133.16150.1 vs. uniprot
Match: A0A6H5KTI0_9PHAE (UMP-CMP kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI0_9PHAE)

HSP 1 Score: 317 bits (813), Expect = 2.540e-100
Identity = 169/243 (69.55%), Postives = 196/243 (80.66%), Query Frame = 2 
Query:  101 GAVGSAVLVATALAIYMCRPSKGKDEERETTNRESDATEQTSRELSTSPPARVVFVLGGPGSGKGTQCALIAENETLGYAHLSAGDLLRAERNSGSELADMINEYIREGKIVPAQVTVGLLQNAMKDSGKSRFLIDGFPRNPENLAAWEVAAAEAGGGIIFDFALFLDCPEEVMTQRIMERGKSSGRVDDNEEAIRKRLSTYRESTMPIIKEFEARGKMRQVNSDQSIEGVAKDVRQHIDSIA 829
            GAV SA++V+  + I      + + +++    R   A   T           VVFVLGGPGSGKGTQCALIAE E LGYAHLSAGDLLRAERNSGSELA MINE+IREGKIVPA+VTVGLL+ AM+ SGKSRFLIDGFPRNP+NLAAWE  A+ AGG ++ DFALFLDCPEE+MT+RIMERG+SSGR+DDNEEAIRKRL TYRESTMPIIKEFEARGK+R+VNSDQ+IE VA +VR+HI +IA
Sbjct:    9 GAVLSAIIVSGVVGIAALLALRNRQQKKSRGARNGGAVGAT---------PHVVFVLGGPGSGKGTQCALIAEEEALGYAHLSAGDLLRAERNSGSELAGMINEFIREGKIVPAEVTVGLLRKAMEKSGKSRFLIDGFPRNPDNLAAWE--ASTAGGAVVVDFALFLDCPEEIMTERIMERGRSSGRIDDNEEAIRKRLMTYRESTMPIIKEFEARGKLREVNSDQTIEEVAIEVRRHISAIA 240
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BLAST of mRNA_H-paniculata_contig8133.16150.1 vs. uniprot
Match: D8LRC1_ECTSI (UMP-CMP kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC1_ECTSI)

HSP 1 Score: 315 bits (808), Expect = 1.610e-99
Identity = 159/191 (83.25%), Postives = 177/191 (92.67%), Query Frame = 2 
Query:  257 VVFVLGGPGSGKGTQCALIAENETLGYAHLSAGDLLRAERNSGSELADMINEYIREGKIVPAQVTVGLLQNAMKDSGKSRFLIDGFPRNPENLAAWEVAAAEAGGGIIFDFALFLDCPEEVMTQRIMERGKSSGRVDDNEEAIRKRLSTYRESTMPIIKEFEARGKMRQVNSDQSIEGVAKDVRQHIDSIA 829
            VVFVLGGPGSGKGTQCALIAE E LGYAHLSAGDLLRAERNSGSELA MINE+IREGKIVPA+VTVGLL+ AM+ SGKSRFLIDGFPRNP+NLAAWE  A+ AGG ++ DFALFLDCPEE+MT+RIMERG+SSGR+DDNEEAIRKRL TYRESTMPIIKEFEARGK+R+VNSDQ+IE VA +VR+HI +IA
Sbjct:   56 VVFVLGGPGSGKGTQCALIAEEEALGYAHLSAGDLLRAERNSGSELAGMINEFIREGKIVPAEVTVGLLRKAMEKSGKSRFLIDGFPRNPDNLAAWE--ASTAGGAVVVDFALFLDCPEEIMTERIMERGRSSGRIDDNEEAIRKRLVTYRESTMPIIKEFEARGKLREVNSDQTIEEVAVEVRRHISAIA 244
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BLAST of mRNA_H-paniculata_contig8133.16150.1 vs. uniprot
Match: A0A7S3H2J5_9STRA (UMP-CMP kinase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H2J5_9STRA)

HSP 1 Score: 225 bits (573), Expect = 3.540e-65
Identity = 115/190 (60.53%), Postives = 140/190 (73.68%), Query Frame = 2 
Query:  254 RVVFVLGGPGSGKGTQCALIAENETLGYAHLSAGDLLRAERNSGSELADMINEYIREGKIVPAQVTVGLLQNAMKDSGKSRFLIDGFPRNPENLAAWEVAAAEAGGGIIFDFALFLDCPEEVMTQRIMERGKSSGRVDDNEEAIRKRLSTYRESTMPIIKEFEARGKMRQVNSDQSIEGVAKDVRQHIDS 823
            ++VFVLGGPGSGKGT C  I E    GY HLSAGDLLRAER SGSELADMIN YI+EGKIVPA+VTV LL+NA++ SG  +FL+DGFPR+ +NL  W+   +         F LFLDCP EVMT R++ERGK+SGR DDNEE++RKRL TY +ST PII  F A GK+R+VNS++  E V  +V  H  +
Sbjct:   42 KIVFVLGGPGSGKGTNCTRIVER--FGYVHLSAGDLLRAERESGSELADMINTYIKEGKIVPAEVTVRLLRNAIESSGNHKFLVDGFPRDLQNLECWKANMSAIAD---VQFLLFLDCPHEVMTARLLERGKTSGRADDNEESVRKRLLTYEQSTRPIIDSFRAEGKVREVNSNRPFEEVFAEVSLHFSA 226
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BLAST of mRNA_H-paniculata_contig8133.16150.1 vs. uniprot
Match: A0A7S2HN02_9STRA (UMP-CMP kinase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HN02_9STRA)

HSP 1 Score: 212 bits (540), Expect = 4.680e-60
Identity = 120/243 (49.38%), Postives = 169/243 (69.55%), Query Frame = 2 
Query:  113 SAVLVATALAIYMC---RPSKGKDEERE---TTNRESDATEQT-SRELSTSPPARVVFVLGGPGSGKGTQCALIAENETLGYAHLSAGDLLRAERN-SGSELADMINEYIREGKIVPAQVTVGLLQNAMKD----SGKSRFLIDGFPRNPENLAAWEVAAAEAGGGIIFDFALFLDCPEEVMTQRIMERGKSSGRVDDNEEAIRKRLSTYRESTMPIIKEFEARGKMRQVNSDQSIEGVAKDV 805
            S  L AT+   Y     R S  +DEE+E    T++++  T+   S   +T+ P +VVFVLGGPG+GKGTQC L+++N  LG+AHLSAGDLLRAER  + SELAD+IN  I  G+IVPA +TV LL+ AM+     SG ++FLIDGFPR+  N+  W+    + G  I+ +F LFLDCPE+VMT R++ERG++SGRVDDN + IRKR  T+R  +MPI+  +E +GK+R+V +D+++E +  +V
Sbjct:    9 SLFLFATSAVAYTMVSNRSSSKEDEEKEGKKVTDKDTSTTKAVESTTAATTSPFKVVFVLGGPGAGKGTQCELLSKN--LGWAHLSAGDLLRAERKKTDSELADLINSKIAAGQIVPASITVRLLREAMESIKSKSGNTKFLIDGFPRSDGNVTVWDEVMTDTGLAIV-EFVLFLDCPEDVMTSRLLERGQTSGRVDDNLDVIRKRFETFRNESMPIVGRYEKKGKVRKVQADRTVEDIYNEV 248
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BLAST of mRNA_H-paniculata_contig8133.16150.1 vs. uniprot
Match: A0A6U4G9K0_9STRA (UMP-CMP kinase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4G9K0_9STRA)

HSP 1 Score: 211 bits (537), Expect = 2.640e-59
Identity = 110/191 (57.59%), Postives = 135/191 (70.68%), Query Frame = 2 
Query:  260 VFVLGGPGSGKGTQCALIAENETLGYAHLSAGDLLRAERNSGSELADMINEYIREGKIVPAQVTVGLLQNAMKDSGKSRFLIDGFPRNPENLAAWEVAAAEAGGGIIFDFALFLDCPEEVMTQRIMERG-KSSGRVDDNEEAIRKRLSTYRESTMPIIKEFEARGKMRQVNSDQSIEGVAKDVRQHIDSIA 829
            +FVLGGPGSGKGTQCAL+ E    GY H+SAGDLLRAER  G  +  +I +YI+EGKIVP+ +TV LL+NAM  SGK RFLIDGFPR+ ENL AW+    E  G I   + LFLDCPEE M +R++ RG + SGR DDNE A+RKRL TY +STMPII  F  +GK  +VN +Q +E V   +  H+D  A
Sbjct:   85 IFVLGGPGSGKGTQCALLQER--FGYVHISAGDLLRAERRKGGPVGTLIEDYIKEGKIVPSSITVQLLRNAMVSSGKQRFLIDGFPRSEENLHAWQ---EELDGVIDVKYLLFLDCPEETMVERVLSRGAQGSGRSDDNEVAVRKRLQTYADSTMPIINYFSKQGKTLKVNGNQPVEEVFSKISPHLDPKA 270
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BLAST of mRNA_H-paniculata_contig8133.16150.1 vs. uniprot
Match: B8BVT3_THAPS (UMP-CMP kinase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVT3_THAPS)

HSP 1 Score: 208 bits (529), Expect = 1.260e-58
Identity = 112/200 (56.00%), Postives = 149/200 (74.50%), Query Frame = 2 
Query:  221 TSRELSTSPPARVVFVLGGPGSGKGTQCALIAENETLGYAHLSAGDLLRAERNS-GSELADMINEYIREGKIVPAQVTVGLLQNAMKD----SGKSRFLIDGFPRNPENLAAWEVAAAEAGGGIIFDFALFLDCPEEVMTQRIMERGKSSGRVDDNEEAIRKRLSTYRESTMPIIKEFEARGKMRQVNSDQSIEGVAKDV 805
            TS   ++  P RVVFVLGGPG+GKGTQC L+++N  L +AHLSAGDLLRAER   GSELAD+IN  I  GKIVP+++TV L++NAM D    SG+++FLIDGFPR+  N+ AW+      GG    +  LF +CPE+V+T R++ERGK+SGR DD+ + IRKR +TYRE +MPII+ +E  GK+RQ+ +D+SIE V K+V
Sbjct:   44 TSPSSTSDEPFRVVFVLGGPGAGKGTQCQLLSDN--LHWAHLSAGDLLRAERQKEGSELADIINSNISAGKIVPSEITVQLIKNAMVDLRKTSGQTKFLIDGFPRSEGNVNAWKEVV---GGAADVELVLFFECPEDVLTSRLLERGKTSGRSDDSIDVIRKRFATYREESMPIIEMYEKEGKVRQIVADRSIEDVYKEV 238
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BLAST of mRNA_H-paniculata_contig8133.16150.1 vs. uniprot
Match: A0A6U4GJ68_9STRA (UMP-CMP kinase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4GJ68_9STRA)

HSP 1 Score: 211 bits (537), Expect = 1.410e-58
Identity = 110/191 (57.59%), Postives = 135/191 (70.68%), Query Frame = 2 
Query:  260 VFVLGGPGSGKGTQCALIAENETLGYAHLSAGDLLRAERNSGSELADMINEYIREGKIVPAQVTVGLLQNAMKDSGKSRFLIDGFPRNPENLAAWEVAAAEAGGGIIFDFALFLDCPEEVMTQRIMERG-KSSGRVDDNEEAIRKRLSTYRESTMPIIKEFEARGKMRQVNSDQSIEGVAKDVRQHIDSIA 829
            +FVLGGPGSGKGTQCAL+ E    GY H+SAGDLLRAER  G  +  +I +YI+EGKIVP+ +TV LL+NAM  SGK RFLIDGFPR+ ENL AW+    E  G I   + LFLDCPEE M +R++ RG + SGR DDNE A+RKRL TY +STMPII  F  +GK  +VN +Q +E V   +  H+D  A
Sbjct:  142 IFVLGGPGSGKGTQCALLQER--FGYVHISAGDLLRAERRKGGPVGTLIEDYIKEGKIVPSSITVQLLRNAMVSSGKQRFLIDGFPRSEENLHAWQ---EELDGVIDVKYLLFLDCPEETMVERVLSRGAQGSGRSDDNEVAVRKRLQTYADSTMPIINYFSKQGKTLKVNGNQPVEEVFSKISPHLDPKA 327
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BLAST of mRNA_H-paniculata_contig8133.16150.1 vs. uniprot
Match: A0A7J7K2I1_BUGNE (UMP-CMP kinase n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7K2I1_BUGNE)

HSP 1 Score: 202 bits (514), Expect = 4.590e-57
Identity = 106/189 (56.08%), Postives = 131/189 (69.31%), Query Frame = 2 
Query:  257 VVFVLGGPGSGKGTQCALIAENETLGYAHLSAGDLLRAERNSGSELADMINEYIREGKIVPAQVTVGLLQNAMKDSGKSRFLIDGFPRNPENLAAWEVAAAEAGGGIIFDFALFLDCPEEVMTQRIMERGKSSGRVDDNEEAIRKRLSTYRESTMPIIKEFEARGKMRQVNSDQSIEGVAKDVRQHIDS 823
            VVFVLGGPG+GKGTQC  I +    GY HLSAGDLLRAER  G +LADMI  +I  G IVP +VT  LL  AM+DSGK  FLIDGFPRN  NL  W+ A  +        F LF DCPEE   QR +ERG +SGR DDNEE++RKR+ TY +STMPIIK +E++G +RQ+ +++ I+ V + V+Q   S
Sbjct:   18 VVFVLGGPGAGKGTQCEKIVKE--FGYVHLSAGDLLRAERAKGGKLADMIEHHITNGSIVPVEVTCSLLDKAMEDSGKQDFLIDGFPRNENNLQGWQKAMDDK---TTVKFVLFFDCPEEDCVQRCLERGLTSGRTDDNEESMRKRIVTYTQSTMPIIKYYESQGLVRQIKANRPIDEVFEQVKQAFSS 201
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BLAST of mRNA_H-paniculata_contig8133.16150.1 vs. uniprot
Match: C5LAN5_PERM5 (UMP-CMP kinase n=6 Tax=Perkinsus TaxID=28000 RepID=C5LAN5_PERM5)

HSP 1 Score: 201 bits (510), Expect = 1.290e-56
Identity = 110/193 (56.99%), Postives = 135/193 (69.95%), Query Frame = 2 
Query:  257 VVFVLGGPGSGKGTQCALIAENETLGYAHLSAGDLLRAERN-SGSELADMINEYIREGKIVPAQVTVGLLQNAM--KDSGKSRFLIDGFPRNPENLAAWEVAAAEAGGGIIFDFALFLDCPEEVMTQRIMERGKSSGRVDDNEEAIRKRLSTYRESTMPIIKEFEARGKMRQVNSDQSIEGVAKDVRQHIDSI 826
            VVFVLGGPG+GKGTQC LI +    GY HLSAGDLLR ERN  GSE  D+I +YIREG IVP ++TV LL+ AM  +D    +FLIDGFPRN +NL  WE      GG +   F LF DCPE VM +R++ RGK+SGR DDN E+IRKR  TY   TMPII  F+A+GK R+VN+D+S+E V  DV+   + +
Sbjct:    5 VVFVLGGPGAGKGTQCDLIEKE--YGYVHLSAGDLLREERNREGSEYGDLIEKYIREGAIVPVEITVNLLKRAMEQRDWEHGKFLIDGFPRNEDNLDGWERVL---GGKVDEKFCLFFDCPEGVMEKRLLSRGKTSGRSDDNLESIRKRFRTYEADTMPIIVRFKAKGKERRVNADRSVEEVWFDVKNIFEKM 192
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BLAST of mRNA_H-paniculata_contig8133.16150.1 vs. uniprot
Match: A0A7S2C1B9_9STRA (UMP-CMP kinase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1B9_9STRA)

HSP 1 Score: 201 bits (511), Expect = 4.360e-56
Identity = 108/191 (56.54%), Postives = 133/191 (69.63%), Query Frame = 2 
Query:  254 RVVFVLGGPGSGKGTQCALIAENETLGYAHLSAGDLLRAERNSGSELADMINEYIREGKIVPAQVTVGLLQNAMKDSGKSRFLIDGFPRNPENLAAWEVAAAEAGGGIIFDFALFLDCPEEVMTQRIMERGKSSGRVDDNEEAIRKRLSTYRESTMPIIKEFEARGKMRQVNSDQSIEGVAKDVRQHIDSI 826
            +VVFVLGGPGSGKGT CA I E    G+ HLSAGDLLRAER SGSEL DMI  +I+ G IVPA+VTV LL  AMK S  + FL+DGFPRN +NL  W             +F L L+CPEEVM QR+++RG++SGR DDN E+IRKR  TY+ESTMP+++ F    K+R+V SD++ E V  DVR  I  +
Sbjct:   42 KVVFVLGGPGSGKGTMCARIVEE--FGFMHLSAGDLLRAERKSGSELGDMIEGHIQAGSIVPAEVTVRLLDEAMKKSEATCFLVDGFPRNADNLECWVKLMTHCK----VEFVLMLECPEEVMEQRLLKRGETSGRSDDNIESIRKRFKTYKESTMPVVQVFAKENKVREVVSDRAPEEVYADVRTAICEV 226
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8133.16150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTI0_9PHAE2.540e-10069.55UMP-CMP kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
D8LRC1_ECTSI1.610e-9983.25UMP-CMP kinase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A7S3H2J5_9STRA3.540e-6560.53UMP-CMP kinase n=1 Tax=Spumella elongata TaxID=890... [more]
A0A7S2HN02_9STRA4.680e-6049.38UMP-CMP kinase n=1 Tax=Helicotheca tamesis TaxID=3... [more]
A0A6U4G9K0_9STRA2.640e-5957.59UMP-CMP kinase n=1 Tax=Phaeomonas parva TaxID=1244... [more]
B8BVT3_THAPS1.260e-5856.00UMP-CMP kinase n=1 Tax=Thalassiosira pseudonana Ta... [more]
A0A6U4GJ68_9STRA1.410e-5857.59UMP-CMP kinase n=2 Tax=Phaeomonas parva TaxID=1244... [more]
A0A7J7K2I1_BUGNE4.590e-5756.08UMP-CMP kinase n=1 Tax=Bugula neritina TaxID=10212... [more]
C5LAN5_PERM51.290e-5656.99UMP-CMP kinase n=6 Tax=Perkinsus TaxID=28000 RepID... [more]
A0A7S2C1B9_9STRA4.360e-5656.54UMP-CMP kinase n=1 Tax=Florenciella parvula TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8133contigH-paniculata_contig8133:3178..9775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score317.0
Seed ortholog evalue8e-84
Seed eggNOG ortholog2880.D8LRC1
Preferred nameCMPK1
KEGG rclassRC00002
KEGG koko:K13800
KEGG ReactionR00158,R00512,R01665,R11891,R11892
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
KEGG ModuleM00052
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0003674,GO:0003824,GO:0004127,GO:0004550,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006165,GO:0006206,GO:0006207,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006225,GO:0006227,GO:0006240,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009185,GO:0009186,GO:0009188,GO:0009189,GO:0009193,GO:0009194,GO:0009196,GO:0009197,GO:0009218,GO:0009219,GO:0009220,GO:0009221,GO:0009259,GO:0009260,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0018963,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0019752,GO:0019856,GO:0022414,GO:0022602,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0033862,GO:0034404,GO:0034641,GO:0034654,GO:0036430,GO:0042455,GO:0042537,GO:0042698,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046048,GO:0046049,GO:0046062,GO:0046077,GO:0046112,GO:0046131,GO:0046132,GO:0046134,GO:0046385,GO:0046390,GO:0046483,GO:0046704,GO:0046705,GO:0046939,GO:0046940,GO:0048511,GO:0048609,GO:0050145,GO:0055086,GO:0070013,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
EggNOG free text desc.cytidylate kinase activity
EggNOG OGsCOG0563@1,KOG3079@2759
Ec32 ortholog descriptionflagellar adenylate kinase
Ec32 orthologEc-06_003080.1
EC2.7.4.14
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons4
Model size2191
Cds size765
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8133.16150.1prot_H-paniculata_contig8133.16150.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8133 3245..8416 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931018.5743182-UTR-H-paniculata_contig8133:3177..32441622931018.5743182-UTR-H-paniculata_contig8133:3177..3244Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8133 3178..3244 +
1691481552.912787-UTR-H-paniculata_contig8133:3177..32441691481552.912787-UTR-H-paniculata_contig8133:3177..3244Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8133 3178..3244 +
1622931018.6834044-UTR-H-paniculata_contig8133:8416..97751622931018.6834044-UTR-H-paniculata_contig8133:8416..9775Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8133 8417..9775 +
1691481552.9840913-UTR-H-paniculata_contig8133:8416..97751691481552.9840913-UTR-H-paniculata_contig8133:8416..9775Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8133 8417..9775 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931018.5892427-CDS-H-paniculata_contig8133:3244..35971622931018.5892427-CDS-H-paniculata_contig8133:3244..3597Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8133 3245..3597 +
1691481552.9303877-CDS-H-paniculata_contig8133:3244..35971691481552.9303877-CDS-H-paniculata_contig8133:3244..3597Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8133 3245..3597 +
1622931018.6057048-CDS-H-paniculata_contig8133:7243..74391622931018.6057048-CDS-H-paniculata_contig8133:7243..7439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8133 7244..7439 +
1691481552.94079-CDS-H-paniculata_contig8133:7243..74391691481552.94079-CDS-H-paniculata_contig8133:7243..7439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8133 7244..7439 +
1622931018.6263978-CDS-H-paniculata_contig8133:7811..79801622931018.6263978-CDS-H-paniculata_contig8133:7811..7980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8133 7812..7980 +
1691481552.9516737-CDS-H-paniculata_contig8133:7811..79801691481552.9516737-CDS-H-paniculata_contig8133:7811..7980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8133 7812..7980 +
1622931018.6563308-CDS-H-paniculata_contig8133:8369..84161622931018.6563308-CDS-H-paniculata_contig8133:8369..8416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8133 8370..8416 +
1691481552.966013-CDS-H-paniculata_contig8133:8369..84161691481552.966013-CDS-H-paniculata_contig8133:8369..8416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8133 8370..8416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8133.16150.1

>prot_H-paniculata_contig8133.16150.1 ID=prot_H-paniculata_contig8133.16150.1|Name=mRNA_H-paniculata_contig8133.16150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=255bp
MPGRDKSMLVVGAVGSAVLVATALAIYMCRPSKGKDEERETTNRESDATE
QTSRELSTSPPARVVFVLGGPGSGKGTQCALIAENETLGYAHLSAGDLLR
AERNSGSELADMINEYIREGKIVPAQVTVGLLQNAMKDSGKSRFLIDGFP
RNPENLAAWEVAAAEAGGGIIFDFALFLDCPEEVMTQRIMERGKSSGRVD
DNEEAIRKRLSTYRESTMPIIKEFEARGKMRQVNSDQSIEGVAKDVRQHI
DSIA*
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mRNA from alignment at H-paniculata_contig8133:3178..9775+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8133.16150.1 ID=mRNA_H-paniculata_contig8133.16150.1|Name=mRNA_H-paniculata_contig8133.16150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6598bp|location=Sequence derived from alignment at H-paniculata_contig8133:3178..9775+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGGAGTCAAAGACCCCACAGTAGGCTGCTCAGGACTTTCCTTTCCTCA
GGGACCTAGATTTCACCATGCCTGGTCGCGACAAGAGCATGTTGGTCGTA
GGAGCAGTGGGAAGCGCGGTTCTAGTCGCGACTGCCCTCGCTATCTATAT
GTGTCGACCTTCAAAAGGGAAGGACGAGGAGCGCGAAACTACCAACCGGG
AATCTGACGCCACAGAACAAACATCACGAGAACTCAGCACCAGTCCTCCA
GCGCGGGTAGTGTTTGTTCTTGGTGGGCCGGGGTCTGGTAAGGGCACCCA
GTGTGCCTTGATTGCGGAAAATGAGACCCTGGGATACGCTCATCTTTCTG
CAGGAGACCTGCTCAGGGCGGAGCGTAACTCGGGATCGGAACTGGCCGAT
ATGATCAACGAGTACATCCGGTATGTATCTGAGGGCAAGAAGCGATCTGG
GATATGCGTTCATCTATTCACTACTATTAGGTAGAGATGATCACAGATAC
TGTTGATAATGGACGGCCAATTTATACTCCCCCAATCGGCACTGTTCAGT
AACGGATCGAGTCTTCCCTCTGGGTGTGATTAAAATATCCGGCAACCTAG
GGTTGGGTGATATGCGTCAGTACAGTCAGTGGTACAGATATGCAGTTCAG
GCAGTTCTCTACAGGTAGGCGGTACAATACAGTACGGGCAGTGTTGATGA
AGGGCTGTCCTAATCCCACTTGTCCTTCGGTTACCTCATGAAATTGAGTC
AAGACTTCCCATCGGATGCGATGGACACTCCCGGCACATGGGTTCTGGGA
GCGACGCCAGGTGCGTGTCAACATCTTTTGAAACCCTTGGAACACAGTGT
AAAGTCCAGAGGTGTACATCACTGCAGGTGGCTAATATCCGGCAAGTAAC
AGAATCCGAGCTAAATTCTGGTTGGTCGATATTTTTGGGGGCTGATATAT
CGATCTTTTCGATTGTTCCAATTATATCGTATTTTGTGTCACGGGCCGCG
TAAAATCTTAACTTGAAAGCGAAACACACCGCAACACGGCTGCACGCATG
CACATATATACACACAGGCCAAAATTAGCACTACTTGTGACCTCGGGAAC
ACACACACGCTATTCACCCCCCCGCCCCCCCGCCCCCCCGCCCCCCCACC
CCACAAAACAAGCCATTCGTTATTTCGGAGTGCGGAAATTGTGGGGAGTA
ATTGTTTTGACCCACGATCGATAGTTATCAGTACGTAACATGGCAGCTCT
TTGACGATAATGTACATACATGTCTGATGAAAACTAGTGTCGAAAATCAG
ACGATATTTTTTCATCAGATACGATATGATGTTGTGCAACATGACTATCG
TACATACCCATCTGTGTATACATTGAAATATTGAAAGTCGTTTTTTTATC
TGATGGTCCGATATGGAACAACTTCCAAAACGTGAACAAAACAGTAACAC
CTTTGAAGTGCCGAGCGCTGATTCGAAACCAAATATGCATCTGGAGTAAT
GAATAAAGGTCTCGGGAATAACTTCTCCAGTCGCGGCGGCATGGATTCAG
ACTGAAAATGGAATTTGTCTGTTCGTTCAACTATAGAAATCTGCTGCCTT
ATCAAATGCTGTAGATAATATCCAACCGCGCTCGAAAGTCTTTTAGGTCG
ACTGAACGAATCGAAATACAGGAGTTTCCCTCAATGAAAAGTGACAAACG
GTGCAGGCGAGGGGGGAGGGTGGGGGTCTGTGCACGTGTGGTACCTGCCG
CGAGCATGCGCTTCGTTGCATGGGACATGTGGGGACGCGGTTCGTTGGAA
CTCATACCCTGATTGCCCGCACAACATGTACTACTAGAGTCGAGCGCTGC
AGTTTTGGCGCGCGCAGAAGGCGTATTCCTGCCAGTAGTGGATTATCTAA
ATCATCTGCGGCTCCCTCATCCCCGTGACGATGTGATCAGGCGTTGTGTC
AAGGAAAACTTCACTCTGTTTTATTTTATTTGATGTATTGTTGTGCGGGA
TACAAAACTATGTGATCACGAAGAACGCTTGATCACAAGGCTTGGAAAAA
TAATACTGGTCGTTGATGCAGATTGCATCATAACAGAATGATGGCCCCAC
TACGATCAAAACACAAGGCAAACCTACCGGCGACGTTTTACCCAGTTCCG
GACTCGGAAAGCACAGTCGAGCCCAGCTCGGAACCCGATGATCGCGATGA
AATTATCTGGAAGGGAATCCATCATGTCTATCGTTAAGTGTACCTACCCC
CAAGTAGCGGCAGCCAACAGGTGACTCCTTGAGCGCCTACTTCAGTCGTC
ATTGCTCATCGTTGGGCAGGTGTTTTTTTTTGTTTAATACCTATATACAA
TTGAGCAGTGTTGTCAAATTGGCTTCCCACATATAACTTTTAACCAGATA
GACTCCCTCACCACGCAACAGTTTTTAGGTGAAAATTGGACAGAATTTAG
AGATACCCCGGCGCGAAGAGCGACAAAATAGTTCTCCACTCTTGAGTTTT
TGGTGGAATATAAGATTTACTCGGCCTGTTTGTTGGTGTGCAAGCAAAAT
CTTGGAACTTGATGGTTTCGGTTAGCATTTTTGAGAAAACAGGGTTTCTA
ACCGTAAAATAGCGCTCGAGGCCAGTCACCTCAGGGATCTTGTGATCGGT
ATTCATGATTGAAAGCTACGCAAACTTCATTACATACCTCGCTCAGGCAG
AAAATATTCATCCAGAACGAATGTAAGCTGTCCACTATAGAAGAGGTGAC
CGCGTGGTGGGCTAATGCGACCTACTTGGTGTACATGCTCAGTTGATGTT
TGTGCCCACTTGTAAAATGCGAAAGGGCTTGCATACGCTTTTAAGGCCAT
CACTTATGGTGCAGAAAAACTCGATTCATAATAATAAAATCCCATTTGTT
TTTACTGGAGTTTTTTAACCCATCATCTTGCGGGGTAATTTTTTTTCATC
GGGGAGGATTGACAGCTTGCCTGGTAAAAAAAATGCAATATTTTTGCTGG
AGGATGAGACCCCCTAAAAATGATGATAAAAAATGGGACTTCAACGAGAT
ACACGGGCGTGCTTTCCTAGATTATGTTTCATAGCCTACAGTAAGACACC
CGTGCCGGTCACAAAGGCCAGTACGAAGCACATATACAATCCAAGATGTG
AGCCCAGCCGCCCTACGGGTGATTTGCAAGAATGGCAATCGTTTATGTCA
GCAGCGCTCGCTGCTGGAGTGGTGGCCGTCGGTCTTTTATGTGAAGATCA
CAGACGCGGTCGACGCAAGGGTGCAGCGGCCCTTGCTAATTTCCTAACAG
ACTGTGAGTCGCCCACCCGGGGAGATCCAGCTCGGGGGTTTCCTCCAACC
AGCGGAATAAGCTGTCAACGGCGAAATCCTTGTATAGCTGTACCGCCGTC
TTGTACCTCTCGCTTAGGGGCAGGGTCCCACCGTTCTTCTTAATTGACGT
ACAAGCGTATCACCACTGTGGTACATTCTGTAGTATGATCCACTGTCTTG
CACACACCCGGACTGAACCCTTGAGCCCTCATTTCCTTCCATACCCATTC
CACGCAAGGGTTTGTCTTGATGAACATTGCGGTGGATGGTGCATTCATGG
TGGTTCGCTTTCACAGAATGAGGGTGTGTTGGATGAGAACTCGTGTGTTC
GAAATCCTCTCAACTTAATTGCGCCGCTAGCAAAACGCCATCAAACATTT
AACTAATGACACTTCATGTCTCTGACTCAGGCCCGACCCCGTAAGATGAG
CTATCAATTTTTCCCAACCATTTTATTTCACAGTGAAAAAGATTGGGATG
TTATGATTTTGATTGAAAGTGTTTTTGGCAACCATAAGGGATGGCAAACC
TCAAGCTCCTCGTTTATTTCATGTTTTAAAAACCTGTCGCTGTCTATATA
CTGACCACAGCTCGCCTGGCCTTCATGTGTTGGAATTTTGCTGAGATAAA
GCACGTGAATATTATAGAGATTCAAGATCAGCTGGATAATAACTCAATAC
TCTTCCCTCCTCTTTGCCTCGTCGTTTTTGTCGTCACCGAAACATGAAAC
ACCCCCGCGCGTCCAGGGAAGGCAAGATCGTTCCCGCCCAGGTAACGGTC
GGCTTGCTTCAAAATGCGATGAAGGATTCTGGGAAGTCACGTTTCCTCAT
CGACGGCTTCCCTCGCAACCCCGAGAATCTAGCAGCTTGGGAGGTTGCGG
CGGCCGAGGCAGGAGGAGGCATCATTTTCGACTTCGCCTTGTTTTTGGAC
TGCCCCGAGGAGGTAAGAAAGAGTTGGCCCGAAATACAGGAATACATTTT
CTCTCCGCCTCGTTTCCTCTTCGGGAGGATTGCTGGCTGTATTTTTGACT
CTTCCTCGGATACGTTTCGTTTGTTATTGTGGCATGAGTAGTCGGAAGGC
AGAAGGGATGTTTGGATATTTTGGCGCTTTTCCTTGTGTCAACGTCGTCG
CAGTTGTAGTAGTTGTAATACATATATATAATTTCCTCCTCGACAACTCG
GGCCACCGAGTCTGCACTTGAAGTGTCCGGAAGGACACTGTATGAAAGCT
ACTTGGAAGCAGTGAAGTGGGTGAGTTATTTGATGTTTCACTCATTATTG
GTATTTATTGTGCGTTGCCCCTCTACGGAAGCAGGTGATGACACAGCGCA
TCATGGAGCGCGGGAAGAGCAGCGGGCGTGTGGATGACAACGAAGAGGCT
ATCCGGAAACGGCTGTCCACCTACCGCGAATCCACGATGCCCATCATCAA
GGAGTTCGAGGCTAGAGGGAAGATGCGTCAGGTTAATTCTGACCAGTCTA
TCGGTGAGGAAAGAAGAAATCGAACCCAATGAGAAATGATGTATCGATCC
CAAACAGAATGAGAGGAACAGAAGAAAGGGAATGAAAAGGACAGCAGGTG
ATTTTCAGTAAGGGCCTCTGTCTCTCTCCCCCTTTTTTTTTGTGTGGCTG
TTTTTTTTTTTGGTCAAGTTACACTGTATTTTCCTCCTGAAGATTCAACT
TATATACGCATACGGCTTCCTGATTTTTCACCTGTCTCGTTTTGTGGCTT
TTGCAGCTTTTGCTCCTCTTGTTTTTTTTCTCTGGTATGGCTTGTGTGAC
CCAAAAAATCATGGCAACACCCCCCCCCCCTCCACTCCCCCGTTTTCCTC
TCTTCGTCTTTGTCTGCCTTGTTTTTATTCGTGACTCTGCAGAGGGTGTA
GCTAAGGACGTTAGGCAACACATTGACAGCATCGCTTAAACTAGTGTAGA
ACAGCCAGAGTCTGGACGCCGCCCGCGTGGTTGCGGAAGGGCTTGAGCGA
ATCAGTAGCACGGAGACGGGCACGAAAGACATACCTGAGTTATCCAGGTC
GTCTTCCGTTATGTCCCCCTCCTTGGTCTCCCCAGCGAATGTACGGAAAG
GGTACGGTTGACGAGAAGCGAACAATAGCACTGTACCTTGCTGGAGTCGT
GGGAAACCATTTGTGGGCCCCTACCCAGTTGGGGGGGGTGAGTGTGTAAG
GGGTGGCCGTAGGTTGGGTCATGTGGCGGGTAAGGATTCCTCAAACATGG
TCTTGTAAGCTCCTCTCGGTACTCTAACATCTACAGGTGTGCGAAAAAAT
CTCACGGTAACGTGGAAGTAGTTTCTTTATAAAAGCGAATTGGTGAAGGT
TGGTGGAGAGGGAAAAAGAACAAGGACGCTATTTTTATTCCATGCCTGGT
TTTTGTTTTTGTAGTTGTGAATGTAGCATTATTAGTACGAGGGTTCGTGT
GACACGTCATACAAGGTGATTACTTTTTGTTTTTTTGTGTGTATGTGTGC
GTCCTGTTGTTTTGGTGGGCGGTGCACTTACTACATACTTTGGCGTCGGC
ATTGGCATTGGCGTTGGCGTTGGCGGACGTGATGGATTGGCTTTAGCAGA
CGTATAGGTGTGGTGGGCATGTTGTCCACCTGATCCAGTAATCAGTTTAA
ATACTCTCGACCGGCTGTGTTGATGAGCGCTAAACGCATGGAAGACCTCC
AAGAGGCACTGATCCAGGGAGACGTGTGATGGAGAGCACTGACTGGACTG
GACTGGGCATGAATGGATTTTTCGGGATATACGGTCCTGGACTGACTTGA
AGTGACTCATGTTCCGTCCCCGAAACCTGGCCGTGGGAGTTGTACAAGCT
GATTTGGGGGAATTATCTCGTAGTATGAGGCCAATTTTGATACTTTCTTT
GAGGAATGTGGTCGATTGGTGTAGTAGAGTTGAGCTTTCAGTTTTTCGTG
GTTTCAGATTGGTGGAGATGAGTCGCAAATTTGATGGGCAACGAGGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCCCGGTAAGC
GTACATACGTGCAACTGTAGCCGACGCTGTGTTGTAGATGGTAACTTTCA
TGAATTTATGACGAGCGATTTATCTCTGTACATGAGGAAATGAAAGACGT
ATCGGGTTTTTTGCCCGCGGTTTTAATCAATTGTCGACAATTTTTTTCTT
GTTTGAAACGCAAATAAATTTATTGTCGTAGTACAAGTTACAGGACTCGA
GTATATTCATCATGCAACCTATTTTTGTATATGTTGAGGCGTGGTGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig8133:3178..9775+

>mRNA_H-paniculata_contig8133.16150.1 ID=mRNA_H-paniculata_contig8133.16150.1|Name=mRNA_H-paniculata_contig8133.16150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at H-paniculata_contig8133:3178..9775+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTGGTCGCGACAAGAGCATGTTGGTCGTAGGAGCAGTGGGAAGCGC
GGTTCTAGTCGCGACTGCCCTCGCTATCTATATGTGTCGACCTTCAAAAG
GGAAGGACGAGGAGCGCGAAACTACCAACCGGGAATCTGACGCCACAGAA
CAAACATCACGAGAACTCAGCACCAGTCCTCCAGCGCGGGTAGTGTTTGT
TCTTGGTGGGCCGGGGTCTGGTAAGGGCACCCAGTGTGCCTTGATTGCGG
AAAATGAGACCCTGGGATACGCTCATCTTTCTGCAGGAGACCTGCTCAGG
GCGGAGCGTAACTCGGGATCGGAACTGGCCGATATGATCAACGAGTACAT
CCGATGCCTGGTCGCGACAAGAGCATGTTGGTCGTAGGAGCAGTGGGAAG
CGCGGTTCTAGTCGCGACTGCCCTCGCTATCTATATGTGTCGACCTTCAA
AAGGGAAGGACGAGGAGCGCGAAACTACCAACCGGGAATCTGACGCCACA
GAACAAACATCACGAGAACTCAGCACCAGTCCTCCAGCGCGGGTAGTGTT
TGTTCTTGGTGGGCCGGGGTCTGGTAAGGGCACCCAGTGTGCCTTGATTG
CGGAAAATGAGACCCTGGGATACGCTCATCTTTCTGCAGGAGACCTGCTC
AGGGCGGAGCGTAACTCGGGATCGGAACTGGCCGATATGATCAACGAGTA
CATCCGGGAAGGCAAGATCGTTCCCGCCCAGGTAACGGTCGGCTTGCTTC
AAAATGCGATGAAGGATTCTGGGAAGTCACGTTTCCTCATCGACGGCTTC
CCTCGCAACCCCGAGAATCTAGCAGCTTGGGAGGTTGCGGCGGCCGAGGC
AGGAGGAGGCATCATTTTCGACTTCGCCTTGTTTTTGGACTGCCCCGAGG
AGGGAAGGCAAGATCGTTCCCGCCCAGGTAACGGTCGGCTTGCTTCAAAA
TGCGATGAAGGATTCTGGGAAGTCACGTTTCCTCATCGACGGCTTCCCTC
GCAACCCCGAGAATCTAGCAGCTTGGGAGGTTGCGGCGGCCGAGGCAGGA
GGAGGCATCATTTTCGACTTCGCCTTGTTTTTGGACTGCCCCGAGGAGGT
GATGACACAGCGCATCATGGAGCGCGGGAAGAGCAGCGGGCGTGTGGATG
ACAACGAAGAGGCTATCCGGAAACGGCTGTCCACCTACCGCGAATCCACG
ATGCCCATCATCAAGGAGTTCGAGGCTAGAGGGAAGATGCGTCAGGTTAA
TTCTGACCAGTCTATCGGTGATGACACAGCGCATCATGGAGCGCGGGAAG
AGCAGCGGGCGTGTGGATGACAACGAAGAGGCTATCCGGAAACGGCTGTC
CACCTACCGCGAATCCACGATGCCCATCATCAAGGAGTTCGAGGCTAGAG
GGAAGATGCGTCAGGTTAATTCTGACCAGTCTATCGAGGGTGTAGCTAAG
GACGTTAGGCAACACATTGACAGCATCGCTTAAAGGGTGTAGCTAAGGAC
GTTAGGCAACACATTGACAGCATCGCTTAA
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