mRNA_H-paniculata_contig8126.16146.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8126.16146.1
Unique NamemRNA_H-paniculata_contig8126.16146.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8126.16146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8126contigH-paniculata_contig8126:4420..4906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size488
Cds size465
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931018.1299696-UTR-H-paniculata_contig8126:4419..44411622931018.1299696-UTR-H-paniculata_contig8126:4419..4441Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8126 4420..4441 +
1691481552.6858597-UTR-H-paniculata_contig8126:4419..44411691481552.6858597-UTR-H-paniculata_contig8126:4419..4441Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8126 4420..4441 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931018.1455276-CDS-H-paniculata_contig8126:4441..49061622931018.1455276-CDS-H-paniculata_contig8126:4441..4906Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8126 4442..4906 +
1691481552.6996126-CDS-H-paniculata_contig8126:4441..49061691481552.6996126-CDS-H-paniculata_contig8126:4441..4906Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8126 4442..4906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8126.16146.1prot_H-paniculata_contig8126.16146.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8126 4442..4906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8126.16146.1

>prot_H-paniculata_contig8126.16146.1 ID=prot_H-paniculata_contig8126.16146.1|Name=mRNA_H-paniculata_contig8126.16146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp
MGFRAKEHHQLGHWLVALDCTNAFNSVQAGGDLGRSGNPHPGTNTLRCQM
LRGEAGRYNFPDGYRRTQEHLLEHRNPPRQQTGTHPLLHARGTDLAQVRR
TIRGSGGGAIGLPGRSDAGNGGADGRKLNGDPFPRARASTHRSADQQRQD
EGGAP
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mRNA from alignment at H-paniculata_contig8126:4420..4906+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8126.16146.1 ID=mRNA_H-paniculata_contig8126.16146.1|Name=mRNA_H-paniculata_contig8126.16146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=487bp|location=Sequence derived from alignment at H-paniculata_contig8126:4420..4906+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCTCGGGCGGCGCGGAGCTCATGGGCTTCCGCGCGAAGGAACACCACC
AATTGGGGCATTGGCTTGTCGCACTCGACTGTACCAATGCATTCAACTCC
GTCCAAGCGGGCGGAGATCTTGGAAGAAGTGGAAATCCGCACCCCGGGAC
TAACACCCTTCGTTGCCAAATGCTACGGGGAGAAGCCGGCAGATATAATT
TTCCAGATGGATACCGGCGAACGCAAGAACACCTCCTCGAACACAGGAAC
CCACCAAGGCAACAGACTGGGACCCACCCTCTTCTGCATGCCCGTGGGAC
TGATCTTGCGCAAGTGCGGAGAACAATTCGAGGCTCTGGGGGTGGAGCTA
TTGGCCTACCTGGACGATCTGATGCTGGCAATGGGGGAGCTGATGGAAGA
AAACTTAACGGCGATCCATTTCCTCGTGCAAGAGCTAGCACGCATAGGAG
TGCAGATCAACAACGCCAAGACGAAGGGGGTGCCCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig8126:4420..4906+

>mRNA_H-paniculata_contig8126.16146.1 ID=mRNA_H-paniculata_contig8126.16146.1|Name=mRNA_H-paniculata_contig8126.16146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig8126:4420..4906+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCTTCCGCGCGAAGGAACACCACCAATTGGGGCATTGGCTTGTCGC
ACTCGACTGTACCAATGCATTCAACTCCGTCCAAGCGGGCGGAGATCTTG
GAAGAAGTGGAAATCCGCACCCCGGGACTAACACCCTTCGTTGCCAAATG
CTACGGGGAGAAGCCGGCAGATATAATTTTCCAGATGGATACCGGCGAAC
GCAAGAACACCTCCTCGAACACAGGAACCCACCAAGGCAACAGACTGGGA
CCCACCCTCTTCTGCATGCCCGTGGGACTGATCTTGCGCAAGTGCGGAGA
ACAATTCGAGGCTCTGGGGGTGGAGCTATTGGCCTACCTGGACGATCTGA
TGCTGGCAATGGGGGAGCTGATGGAAGAAAACTTAACGGCGATCCATTTC
CTCGTGCAAGAGCTAGCACGCATAGGAGTGCAGATCAACAACGCCAAGAC
GAAGGGGGTGCCCCCATGGGCTTCCGCGCGAAGGAACACCACCAATTGGG
GCATTGGCTTGTCGCACTCGACTGTACCAATGCATTCAACTCCGTCCAAG
CGGGCGGAGATCTTGGAAGAAGTGGAAATCCGCACCCCGGGACTAACACC
CTTCGTTGCCAAATGCTACGGGGAGAAGCCGGCAGATATAATTTTCCAGA
TGGATACCGGCGAACGCAAGAACACCTCCTCGAACACAGGAACCCACCAA
GGCAACAGACTGGGACCCACCCTCTTCTGCATGCCCGTGGGACTGATCTT
GCGCAAGTGCGGAGAACAATTCGAGGCTCTGGGGGTGGAGCTATTGGCCT
ACCTGGACGATCTGATGCTGGCAATGGGGGAGCTGATGGAAGAAAACTTA
ACGGCGATCCATTTCCTCGTGCAAGAGCTAGCACGCATAGGAGTGCAGAT
CAACAACGCCAAGACGAAGGGGGTGCCCCC
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