mRNA_H-paniculata_contig8122.16144.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8122.16144.1
Unique NamemRNA_H-paniculata_contig8122.16144.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig8122.16144.1 vs. uniprot
Match: D7G130_ECTSI (Tudor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G130_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 2.410e-53
Identity = 111/162 (68.52%), Postives = 121/162 (74.69%), Query Frame = 2 
Query:    2 YECTIQEVTANGYKVAFTSYGNAEEVPFEYLQKKETLSLAKAKQAETLAEAEATFAIPESLRPTDEDTXXXXXXXXXXIKALKGRFKLKQKDAVVNNKQASWQAFQSKGAKKKPKGSMAAVSTKKGSIFASPDGLEGRVGVTGSGQGLTEQAPRKKFKATKD 487
            Y+CTIQEVTANGYK+ F +YGN EEVP EYLQKK T+SLAK                           XXXXXXXXXX+KALKGRFK+KQKDAVVNNKQASWQAFQ+KGAKKK KGSMAAVS KK SIFASP GLEG+VGVTGSGQG+TEQ  RKK K  K+
Sbjct:  202 YDCTIQEVTANGYKIVFPAYGNVEEVPLEYLQKKVTMSLAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKALKGRFKIKQKDAVVNNKQASWQAFQTKGAKKKTKGSMAAVSLKKESIFASPAGLEGKVGVTGSGQGITEQVARKKHKTVKE 363
[Close]
BLAST of mRNA_H-paniculata_contig8122.16144.1 vs. uniprot
Match: A0A6H5JFR7_9PHAE (Tudor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR7_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 4.780e-50
Identity = 105/177 (59.32%), Postives = 116/177 (65.54%), Query Frame = 2 
Query:    2 YECTIQEVTANGYKVAFTSYGNAEEVPFEYLQKKETLSLAKAK-----QAETLAEAEATFAIPESLR----PTDEDTXXXXXXXXXXIKA-------LKGRFKLKQKDAVVNNKQASWQAFQSKGAKKKPKGSMAAVSTKKGSIFASPDGLEGRVGVTGSGQGLTEQAPRKKFKATK 484
            Y+CTIQEVTANGYK+ F +YGN EEVP EYLQKK T+SLAK +     Q       EA      S R    P +              K        + GRFK+KQKDAVVNNKQASWQAFQ+KGAKKK KGSMAAVS KK SIFASP GLEG+VGVTGSGQG+TEQA RKK K  K
Sbjct:  202 YDCTIQEVTANGYKIVFPAYGNVEEVPLEYLQKKVTMSLAKRRRRSRQQVSRAVTGEAGRGAGRSRRVFRHPGEPSVTRGRLRGGAGSKTQEGQGAEVPGRFKIKQKDAVVNNKQASWQAFQTKGAKKKTKGSMAAVSLKKESIFASPAGLEGKVGVTGSGQGITEQATRKKHKTVK 378
[Close]
BLAST of mRNA_H-paniculata_contig8122.16144.1 vs. uniprot
Match: F0Y5G7_AURAN (Tudor domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5G7_AURAN)

HSP 1 Score: 122 bits (305), Expect = 5.290e-31
Identity = 72/158 (45.57%), Postives = 99/158 (62.66%), Query Frame = 2 
Query:    2 YECTIQEVTANGYKVAFTSYGNAEEVPFEYLQKKETLSLAKAKQAETLAEAEATFAIPESLRPTDEDTXXXXXXXXXXIKALKGRFKLKQKDAVVNNKQASWQAFQSKGAKKKPKGSMAAVSTKKGSIFASPDGLEGRVGVTGSGQGLTEQAPRKKFK 475
            YE  ++ +T  GYKV F  YGN+EE+P EYL+ K+     +    E   EA+ ++ IP+ LR +  D+          +KALK + K ++KD V + ++ SW AFQSKGAK+K  GSM     +KGSIFASPD ++GRVGVTGSG  +TE   RKK+K
Sbjct:  112 YEVVVEAITDFGYKVQFQEYGNSEELPLEYLRPKDADG-GRLDANELYREADGSWRIPDHLRVSHTDSEQERLRKRRKVKALKQKDKQREKDEVRDGQKNSWLAFQSKGAKRKVAGSM--KGARKGSIFASPDTVDGRVGVTGSGAEMTEFGERKKYK 266
[Close]
BLAST of mRNA_H-paniculata_contig8122.16144.1 vs. uniprot
Match: A0A7S2USF4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USF4_9STRA)

HSP 1 Score: 111 bits (277), Expect = 9.030e-27
Identity = 77/182 (42.31%), Postives = 100/182 (54.95%), Query Frame = 2 
Query:    2 YECTIQEVTANGYKVAFTSYGNAEEVPFEYLQ-----KKETLSLAKAKQAETLAEAEAT-------------------FAIPESLRPTDEDTXXXXXXXXXXIKALKGRFKLKQKDAVVNNKQASWQAFQSKGAKKKPKGSMAAVST--KKGSIFASPDGLEGRVGVTGSGQGLTEQAPRKK 469
            YE T+QEVT  G+KVAFT+YGNAEEVP EYLQ     + E  SL +    E  A A                      F IP++LR    DT          IKA+K R KL++ +   N+KQ +WQ F++KG    PKGS  A++   +K SIFA+P  +EG+VGV GSG+G T+   RKK
Sbjct:   95 YEATVQEVTVYGFKVAFTAYGNAEEVPLEYLQLPPQTRGEKRSLLEGTLPEEPARARIPASAPGALALKPVESQALKDFKIPDNLRLLPTDTEQEKLRKRKKIKAIKSRLKLQEAEEERNSKQQNWQKFRTKG----PKGSRKAINVPGRKTSIFAAPTSVEGKVGVVGSGKGTTKFDLRKK 272
[Close]
BLAST of mRNA_H-paniculata_contig8122.16144.1 vs. uniprot
Match: A0A835YIB2_9STRA (Tudor domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIB2_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.870e-25
Identity = 66/158 (41.77%), Postives = 91/158 (57.59%), Query Frame = 2 
Query:    2 YECTIQEVTANGYKVAFTSYGNAEEVPFEYLQKKETLSLAKAKQAETLAEAEATFAIPESLRPTDEDTXXXXXXXXXXIKALKGRFKLKQKDAVVNNKQASWQAFQSKGAKKKPKGSMAAVSTKKGSIFASPDGLEGRVGVTGSGQGLTEQAPRKKFK 475
            Y+C I+  T +GYKV FT YGN EE+P EYLQ+K       A  A   +  + TF IP++LR    DT          +KALK  +K +  +   + KQ+SW+AF      K+  GSM  V  +K SIF SPD L+G+VGV GSGQG+T+   +K+ +
Sbjct:  112 YDCVIESKTEHGYKVLFTQYGNREELPLEYLQQK------PADAAADPSGEDGTFKIPDNLRLQSTDTDADKVRKRNKVKALKMLYKQQLVEQETDKKQSSWKAFAISKGTKRVAGSMKGV--RKESIFKSPDSLDGKVGVVGSGQGMTDFDNKKRTR 261
[Close]
BLAST of mRNA_H-paniculata_contig8122.16144.1 vs. uniprot
Match: A0A7S2F272_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F272_9STRA)

HSP 1 Score: 107 bits (267), Expect = 5.820e-25
Identity = 62/167 (37.13%), Postives = 91/167 (54.49%), Query Frame = 2 
Query:    2 YECTIQEVTANGYKVAFTSYGNAEEVPFEYLQKKETLSLAKAKQAETLAE---------AEATFAIPESLRPTDEDTXXXXXXXXXXIKALKGRFKLKQKDAVVNNKQASWQAFQSKGAKKKPKGSMAAVSTKKGSIFASPDGLEGRVGVTGSGQGLTEQAPRKKFK 475
            Y+  +++   +G +V FT Y N E++P  Y++ K   S+    +  T+           A   F +PE L+    DT          +KALK   K ++ + V   KQASWQ FQ K + K+ KG ++  + KK SIFASPD ++GRVGVT SGQG+T+   RKK+K
Sbjct:  149 YDAIVEKTIEHGVQVKFTEYKNVEDLPLNYIRPKRAASMEAESRPGTVRRENSAVPTSMAGGVFVVPEHLKVLPSDTEEQKNKKRKKVKALKLANKGREVEEVRREKQASWQTFQKKSSGKRTKGFLSTATKKKSSIFASPDSIDGRVGVTNSGQGITDFEQRKKYK 315
[Close]
BLAST of mRNA_H-paniculata_contig8122.16144.1 vs. uniprot
Match: A0A662Y7T4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y7T4_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 4.590e-20
Identity = 76/182 (41.76%), Postives = 102/182 (56.04%), Query Frame = 2 
Query:    2 YECTIQEVTANGYKVAFTSYGNAEEVPFEYLQKKETLSLAK-------------------AKQAETLAEAEAT--FAIPESLRPTDEDTXXXXXXXXXXIKALKGRFKLKQKDAVVNNKQASWQAFQSKGAKKKPKGSMAAVSTKKGS-IFASPDGLEGRVGVTGSGQGLT--EQAPRKKFK 475
            Y CT+ +VT+ G++V F  YGN+EEVP+EYL+     S A                    AK A+ LA A       IPE+L+    D+    XXXXXX++A+K   + K  D   N KQ  W+AFQ K  KKK    ++ V +K+GS +FASPD ++GRVGV GSGQG+T  + A  KK K
Sbjct:  163 YPCTVTKVTSWGFQVLFGGYGNSEEVPYEYLRPSPPSSTASGTVQTQVVAEGLPPRTSSVAKTADALAPAAIAKPIKIPENLQILPTDSEAEKXXXXXXVRAIKSLNRHKNIDNERNVKQHDWKAFQHKAKKKKLTKGVSGVLSKRGSSMFASPDTVQGRVGVVGSGQGMTAFQDARNKKPK 344
[Close]
BLAST of mRNA_H-paniculata_contig8122.16144.1 vs. uniprot
Match: A0A5D6XGX8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XGX8_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 8.580e-19
Identity = 73/188 (38.83%), Postives = 102/188 (54.26%), Query Frame = 2 
Query:    2 YECTIQEVTANGYKVAFTSYGNAEEVPFEYLQKKETLSLAKAKQAETLAEAEAT-----------------------------FAIPESLRPTDEDTXXXXXXXXXXIKALKGRFKLKQKDAVVNNKQASWQAFQSKGAKKKPKGSMAAVSTKKGSIFASPDGLEGRVGVTGSGQGLTEQAP-RKKFK 475
            Y C +  VTA+G++V F+ YGN+EEVP+EYL+     + A A  A+T  +A+A                                IPESL+    D+  XXXXXXXX +A+K   + K  +   N KQ+ WQ+FQ K  K++ +G+   +S K  S+FA P+G+ GRVGV GSGQG+T     RKK K
Sbjct:  170 YACAVTAVTAHGFQVLFSGYGNSEEVPYEYLRALPPATGATAAGADTNTDAKAXXXXXXXXXXXXXXXXXXXXXXXXXVVAKPIKIPESLQILPGDSEAXXXXXXXXQRAIKSLNRHKTIENERNAKQSGWQSFQHKAQKRRVQGATGVLSKKSTSMFAVPEGVGGRVGVVGSGQGMTAYHDGRKKLK 357
[Close]
BLAST of mRNA_H-paniculata_contig8122.16144.1 vs. uniprot
Match: A0A2D4CIW9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIW9_PYTIN)

HSP 1 Score: 89.0 bits (219), Expect = 2.710e-18
Identity = 73/181 (40.33%), Postives = 97/181 (53.59%), Query Frame = 2 
Query:    2 YECTIQEVTANGYKVAFTSYGNAEEVPFEYLQKKETLSLAK-----------------AKQAET-LAEAEATFA----IPESLRPTDEDTXXXXXXXXXXIKALKGRFKLKQKDAVVNNKQASWQAFQSKGAKKKPKGSMAAVSTKKGSIFASPDGLEGRVGVTGSGQGLTE-QAPRKKFK 475
            Y  T+  +TA G +V F  YGN EEVPFEYL+ + +  +A                  AK A T L   EA  A    +PE+L     D+     XXXX +K ++   KLK+ +     KQ  W++FQ K  KK  +GS   V +K+GS+FASPD ++GRVGV GSGQG+T     RKK K
Sbjct:   87 YTATVTAITAYGVQVLFDGYGNTEEVPFEYLRVRSSADVATPAAAPSTTTATLESNKPAKAAVTGLKPLEAVLAKPIKVPENLHILPTDSEAEREXXXXRLKHIQKLNKLKEAENERTIKQHDWKSFQHKAMKKGVRGS--GVLSKRGSMFASPDTVQGRVGVVGSGQGMTAFDDVRKKVK 265
[Close]
BLAST of mRNA_H-paniculata_contig8122.16144.1 vs. uniprot
Match: V9G2M6_PHYPR (Tudor domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=V9G2M6_PHYPR)

HSP 1 Score: 89.4 bits (220), Expect = 4.880e-18
Identity = 66/173 (38.15%), Postives = 90/173 (52.02%), Query Frame = 2 
Query:    2 YECTIQEVTANGYKVAFTSYGNAEEVPFEYLQKKETL---------------------SLAKAKQAETLAEA--EATFAIPESLRPTDEDTXXXXXXXXXXIKALKGRFKLKQKDAVVNNKQASWQAFQSKGAKKKPKGSMAAVSTKKGS-IFASPDGLEGRVGVTGSGQGLT 448
            Y C++ +VT  G++V F  YGN+EEVP+EYL+    L                     +LA A  A  +A A       IPE+L+    DT          I+A+K   + K  D   N KQ  W+AFQ K  KK  K  ++ V +K+GS +FASPD ++GRVGV GSGQG+T
Sbjct:  169 YPCSVTKVTELGFQVLFDGYGNSEEVPYEYLRPTALLQSEVGPTTAQTSPTNAVDGATALAGAATAPKVAPAVIHKPIKIPENLQILPSDTEAEKERKRKRIRAIKSLNRHKTIDNERNIKQHDWKAFQYKAKKKGLKKGVSGVLSKRGSSMFASPDTVQGRVGVVGSGQGMT 341
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8122.16144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G130_ECTSI2.410e-5368.52Tudor domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JFR7_9PHAE4.780e-5059.32Tudor domain-containing protein n=1 Tax=Ectocarpus... [more]
F0Y5G7_AURAN5.290e-3145.57Tudor domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S2USF4_9STRA9.030e-2742.31Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YIB2_9STRA1.870e-2541.77Tudor domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7S2F272_9STRA5.820e-2537.13Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A662Y7T4_9STRA4.590e-2041.76Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A5D6XGX8_9STRA8.580e-1938.83Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2D4CIW9_PYTIN2.710e-1840.33Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
V9G2M6_PHYPR4.880e-1838.15Tudor domain-containing protein n=9 Tax=Phytophtho... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8122contigH-paniculata_contig8122:1717..10599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size505
Cds size291
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8122.16144.1prot_H-paniculata_contig8122.16144.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8122 2250..10599 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931017.961153-UTR-H-paniculata_contig8122:1716..19091622931017.961153-UTR-H-paniculata_contig8122:1716..1909Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8122 1717..1909 -
1691481552.6197066-UTR-H-paniculata_contig8122:1716..19091691481552.6197066-UTR-H-paniculata_contig8122:1716..1909Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8122 1717..1909 -
1622931017.978953-UTR-H-paniculata_contig8122:2230..22491622931017.978953-UTR-H-paniculata_contig8122:2230..2249Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8122 2231..2249 -
1691481552.630652-UTR-H-paniculata_contig8122:2230..22491691481552.630652-UTR-H-paniculata_contig8122:2230..2249Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8122 2231..2249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931017.998101-CDS-H-paniculata_contig8122:2249..22901622931017.998101-CDS-H-paniculata_contig8122:2249..2290Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8122 2250..2290 -
1691481552.6404681-CDS-H-paniculata_contig8122:2249..22901691481552.6404681-CDS-H-paniculata_contig8122:2249..2290Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8122 2250..2290 -
1622931018.0111332-CDS-H-paniculata_contig8122:5621..57471622931018.0111332-CDS-H-paniculata_contig8122:5621..5747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8122 5622..5747 -
1691481552.6509905-CDS-H-paniculata_contig8122:5621..57471691481552.6509905-CDS-H-paniculata_contig8122:5621..5747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8122 5622..5747 -
1622931018.0274582-CDS-H-paniculata_contig8122:10475..105991622931018.0274582-CDS-H-paniculata_contig8122:10475..10599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8122 10476..10599 -
1691481552.6619558-CDS-H-paniculata_contig8122:10475..105991691481552.6619558-CDS-H-paniculata_contig8122:10475..10599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8122 10476..10599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8122.16144.1

>prot_H-paniculata_contig8122.16144.1 ID=prot_H-paniculata_contig8122.16144.1|Name=mRNA_H-paniculata_contig8122.16144.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
LRVHDPGGDRERLQGGLHIVRQRGRGSFRVPSEEGDPVSREGKASRDVSG
SGGNVRHTGELKANGRRYGGRAREETQENQGPQGPIQAQAEGRRGE*
back to top

mRNA from alignment at H-paniculata_contig8122:1717..10599-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8122.16144.1 ID=mRNA_H-paniculata_contig8122.16144.1|Name=mRNA_H-paniculata_contig8122.16144.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8883bp|location=Sequence derived from alignment at H-paniculata_contig8122:1717..10599- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACGAGTGCACGATCCAGGAGGTGACCGCGAACGGTTACAAGGTGGCCT
TCACATCGTACGGCAACGCGGAAGAGGTTCCTTTCGAGTACCTTCAGAAG
AAGGAGACCCTGTCTCTCGCGAAGGTATGCAATCATTGCATCCCCCCGGA
ACAAATACGAATACTTTGCAAATGGTTTTTACAAATAACTTGAAAGTATT
CGCTTGAGTTTCAGAATGAGCTCGTGTATTTCATATATGCCCCGGACCAT
CCACGACTGCTAATAATACTAATAAAATCGAGTGGATCTGGGTGGGCATT
TTATTTGATGTGTTCGCTCATTCTGAAACTTCGGTTAATACATTTTAATT
TTCGTGGCGTACACGCCAAGTATTCCCGTTTGTCCGTGGGGTGAATTATA
TTATATTGTCTGTGTATGCGTGTATATAAATGATATCATTAGATATCATA
ATGTCGCACCGTAATTCAATATAAGCTGCCCCTTCACGTGGACGTGGACT
GAGAGCGAAGCGGGGTGACGCAAGTAAAACAGCGGGTTTTATGTTTTTGG
TGTATGCAAGAAAAGTCTACGCGGCGGTGAAGCAGAAGACGCAGACGGCG
GTAACGTGAACGAGATGCAGACAAAAAGCAGGAGGAGCATAACACAGCAC
AAACGACATGTACTGAATGTGGAAGCAGCGGAAAAGGTTTTTGCCTCAGC
CTTCTGGGGGTTAAAAAACCCCCAAAAAACCCGACATGTACAGTGACTGC
TTGACAAAATTCGTTGCACTAAAAAAAAAAAAACGAAGCTTCAATAAACA
AGCACTTGTAGTTGGTACCGACGCAGGTTGGCTCGCGTGTTTTTTTTGTT
TTTTTTTGCTATTCTTGATTCCCGCACCGCATCCTACTTTTCGTTATTTT
AGTCACGCTGCGCTCAGCTTTGTCGCACAGACACTTTACTGTACTCCGTA
CTGAACCCGCTCACATGTCGGTCATGAGTCAAAAGGAATAATGACATGTG
GCTTTGTGCCTGTTGAACGTACTAATTTGGATGCATTAACAAGAAAACAA
CTTGTTGGAGTTCGTAGTGTACGAAATCCAGTAAGGAGGCTCGCATTCGT
CTAGGAGTTAGTATGAAGCCCCCAACCCCGGAGACAAAATGCACATCTGG
AGTGGAGGCCTCTCCGCGCTCCGTGAGAAATTCTTCGCGATCAGGAAAGT
TTAGCATTTTGTAGGTTTTTGTCTTGTATGTGGTATATACGACAGTGACA
TTTTTTTCCAGATGTGGCGTGTGTCTCGGTAAATTTGTCTGCATATATAT
ATATATATATTTTTTTTTTATCTATATTTGCCTCTTCAGCTGCACGGATG
CACAAACGAAGAGCCAAGAGGATGACTAGAGCTTAAGCACCAGCAAGCAA
CAGACAAGTCAGTTACCGGACCTGCGACACAGGATCCAACTGGCATCTAC
CAACGCCAACCGGCTGGTAAACGTAAAGAATACAACAAGATAGTACGCAG
ACAAATTGTTGCTTACTATACAGACAGGTAGACAGACAGATATATATATA
TATATATATTCGTCCTGGCCTGCATAAATTTTACGCAGAGGAAACATGCA
ACTACTAACTGTACCGATCTGTGTGCATTGTGTAGTTTATGTAAAGTAGT
ACAATACATATACGCATGAGGCGGCAGCCTTTTTTTTTCTGTAGACCTTC
CGTACAAAGATACACAGGGAAATTACCTATAAATATTGACACACCAACCC
TTAATTGGACACACAGACAACACGATGATCCACCAGCAGCAGCAGCAACA
GACTTACAATGAGCACTCATGTAGGGGTACTATAGGCTTTACATCGACCT
TAAGTGCGTAAACAAACGGTCAGATGACGGTTCTGTTGAAGCATCGGATA
AAAGGTTTTGCCTTAGCCGTCCGGTGGTTAGAAAAAAAAAATGACGGTTC
TGTTATCTTGACTTGGCATGTGATCCATTTCGATGGCGATGGAAATGCCT
CACATGGGGCGTCAGCTCAGCACAACCATGTGACCCCCAGTCCCCTTTTA
AGGCTAATACAAGCCTGTAATGTCCCTCAATGTCTGTCCTGGGTGACGTA
GCTGTCGCTGGTGATGGTTGGCAGGCTGCTGCGGCTATTGCCACTAGTGG
TGCATTAGGGTGCCCTCTGTGTCGAAATCTTGACTATGTTGACTTGTGAA
ATTGAGACTCTCCAAAGTCGGGGACAGGAAGCCCTCGCCGGCGGGCACGG
GCTGTTGAATTCAAATCAGCCCCCCCCCCCCCCCTCTCTCTTACTGGTCA
TCATCTAATTATGCTGACAATTGTATACAACTGCAGATTGAAGTAAGCTA
TATGACGTCAACATGGGTACAATGTGGCGATTACACGAGGTTTGGAGTTA
CAGTTCAGCTTACTGTGGTGAGGTGATTTTACTACAATATTGAGAGTTTA
GGGTAGCAAAAATAGAGGATTGTTTTTCATTTTCATGTTGTCGGTTGCGT
ATATGAGGACGATTTCATATTTTTAGCTCCAGTAAAGGACACATGCGAGT
CATGCAGTGAGACTGCCTTGTGCAGGTTGCTGTAGTCTATGTCATGCGTG
ATCGAAGAGGCACGAGAAGTTCCGATAATTGGTCATTATGGGGTCAGAGT
TTAGGGGCATTTGAACAGGATCCTATCGATGAATCCCCCCCCGTTATGGA
TAGGCGCACAACTTTCTTGTGGTTTGTCTCTCTCTCCCAACCCTCGACGC
GTACTGTAGTAGTACCTGAATGGATAACGGCTGTTGTAACCGTTTTGTTT
GACGTTGTTTGACATTGCGTCGTTCTCTGCTGGAAACTTGGAAAAACTTG
GGGAACTCTGTGGAGGGAGGGATGAGGTAGGTGTATGCTCGAACGAACAG
GAAGAGGGACAGCCATGGGGGGTAATACAGACTTTCTCTGTCTTATAAAA
GTCTAGGAGGGTAAGGTGTTATAGTCATAACTTGGATTCAGGTTAGATTA
ATGAAACACCAAGCATTCCACTGGACAGCCCCTGATATCGACTATCTCGT
ACATATCGGAGATGTAGGATTCCGAATGGGGTATATGCAATGGCAGGTTA
GGGGAGTCAGTACGCCAGTATTTACCGAAGTACTGGTTGGTCCCGTCACC
ACAATGAGATGCCGGTGTAATTTTTCAGTTTTGTTCCTCATGTTATTGCC
CGGTAGGTACCGACATGTTCCATCATGCCATATTACACTCATATCCTCAT
GGCATGTGTCATTTTCCATGCGGAAAGTTCTCGTATACATGACGCATACT
GTCGAGGGCGCGTCATCACGTGCCGGCAGATGATTGGTCCGCGTGGAACG
TCAGGATGATGCGCCACCTGACGAGTTGTCCACGCCGAACGTCTGGATGA
CAAGTGATGGCTCTTGGCTTAGGGAGGCGAGGCTTGTGCCTCGCCCCTTG
CCGGTCAGTTCGTATCTTACCTTTCAAGGCACCTTCGTCCTGCCTTGCGT
CGTACCATACCTCGGTGTAGCTCATCACTTGGGTACTCTCACGAAAGGAA
CTCTAACCTCGTAGCCCGCTCGCTGCGGGTTCGTGGGATTCATCTCATCC
TACTTGCTTGGGGGTGAGACTTATACTAAACGTTTTTTTTTTATTGACCT
TGATGCATGCGTATTTTACTGAATTGGTCGGCAATAATTCTTCTGTCGGA
CAGAACATGTTCTAGAATATCTGTTCACAACAGAACAAAGGTGTTTATTC
TTTGTAAGAAATTTTTACTTTGTACTATGTAGAACAATCTTCCAAACCTT
GTAAAGGTATCTGTTCGATTAAAAAAGAAAAATTGGAAACGTTAACAGAA
CATGTGTGAAAAATAGGTTTAAACAGAAGAGTTCTAGAAGATAGAGGGGA
CAGAATATTTTGCTGTGACAGAACAATTTTTCAACAGAGAGTGCAGTGCC
CTAGAGTTAAGTTTTTTTTTGTGTGTGTATCGAGTGTATACAATTCACAA
TGTAAATACGAAACACTGGAATCCCCCGAGTGATTTCTCGCCATTATATA
CGCCTTCAGTCACGCTGACATAACCTGAAACATGTGGGCTGTTGATGAGC
GTTTCGATGAAAATGAACGGTTTTTTGTAGTCAGGGTACTCTACTGCACC
AATGCTGGAACAGTTTGATCGGATGGTATTGCTTACACAATAATCGAATT
ATAATTTTTTTCTTACAGGAAAACGGAAAACACGTTCTCAAGTACGGCGG
CTGCGCATGTGTCCGAACCATTAAGATTCACAATGAATTCCTTGAGTTAT
GATGTCTGGTTTGGATAGACGTTTTCTGTTCGTTCTGTTCGCAGCGACTG
TAACAGGGCAGAACAAGCCTCCCGAAACGTTGTTAGAACATCTGGTTAAA
TGAAATAATTCCCAAACGTTGATGGAAGATCTGATTTAACAGATCAGTTG
CCCAAGCGAACGATGACAGAACATCTGACACGGGGTAAGAAAGATGATGA
GTTCTAGAACAACGTTCTAGAACACACAGAACGTGTTATGTTGTGTCCGA
CAAATTTTGAATAAGAAAACCCTACTCGAAGAGCTATCCAACGTTTAGCA
GCTTCCGGATAGTTATTCTTCCCTCGAGTACTGTGTAAGCAAAGTCACAA
ATGATGCTAAAGACGAATGTGTGATATATTATACTCTAGGCTAGTATATA
TATATATATATACATATATTTGTTATCGTTCGTTTTTTTTTATCCCACAA
ATATTTGGTTGATATTTTTGCGTATAAATATATATTTTGATTTATTTTTC
TCTTTTTTCAACTTGGATTTTTTGGGGCGGGCGGGGGGTTATCTCTCGGC
AGGCAAAGCAAGCCGAGACGTTAGCGGAAGCGGAGGCAACGTTCGCCATA
CCGGAGAGCTTAAGGCCAACGGACGAAGATACGGAGGCAGAGCGAGAGAG
GAAACGCAAGAAAATCAAGGCCCTCAAGGTGATATATAACATGCTCCACA
TGTGTCTGTGTACGAAAGCAGATGCAACGGGTTTGTGTCGTAACTTTATG
TTCCTAAAATAAATTTCGTAGTACAAATGAAGTGTGTCCTACATACATGA
TACGCATGCCTTGATGTGTTGTTGTTCCACGCACCCGACAACTTATCCGT
CGTCTGAAACGACTTAATTACGACGGCCCTTAGTCATAACCCAATATTGG
AAAAATGAAGATCCCTTGTTTTGTTTGTCCCCCCGGTCTTACTTGTATAT
TTCCCACTTTTTAGATCTATTTTCTTGTTCACTTTCACCACTGTCAGGGG
CTCGAGATTTTGGATGTCAACCCACTTCGGGGGGGGGAGGCATTTTTTTT
TTTTTTTCAAGAAACGCCACTTTTATCATGTGTAGGAATCAATCGTTCAG
TGGAAGGCTGCAAACAAGCCGACGAGTCATGTACCTAATACTACTGCTCT
TTCCAGAGCGGTCAAATCAACGTATACAGTCAATCAATCGTCTCATTGTC
TTTGTACCGTATAACGCTGGATTGTATTGAAAAAACCCCCCAAAAGAACA
CGACCCAAAGGCAGATTCCCAAGAAAACAGATTTTTGAGATGTGGGCGCC
TCTAAGGTCTTGTAAACCCTTCGGGATGCAATGCTTTCCGAAACATGAGG
AAGATTTACATCGGATTCGTGTTGAAAAGCAGCAATTTTTCGGGCGTTCC
AAAGGAGTGTGTGCCTAAAACCAGATCTGGGTTGCCAAAATGAGATCTGC
GATGGGCTGCGTTCCCAGGTCTGATACACCTTATTTTTTTACTATGGAAA
GGCATATCCCCCAAAACGCAGATCTCATAGAGCGGGGTCGCGACAGGGTA
TAAAGGGAAGCGGTATTTTAAAACGATTGCTGTAGAGTGCTCTGGGAACG
CGTGGGGGGCGTTTTTTTTTCGAAGTCCATTTGTATCGACAGCAAAGGCC
ATGTGCTTTTGAACGAGCAGGTCGATCACCAGATGTCGACGAGGCCTTTC
TAGCGGTACAATTTTCCATGGTCGGTAGCATCGTAGTTGGCGACAAAATC
GGGTCTGGATTTTTTTGTCGCTCCGGGGCGATCTCAGAGCACTCTACCGG
AGGCGGAAGGAGGGAAAAGGGTTGAACGCTGGTGAAGACGGGTACGCAGG
TCTTCCAGCAAAACAGACAAGCCATCTGATGACAGAATTTTTCACAATGT
ACAGCATGTCGGGTATATGTGTCTGTGTGTCTCTGTGTGTGTGTGAGTAT
GAGTGTGTGTGTGTATCTATATACAGTTAGGGGTGCGCCTAACCCTGATT
TGCAGCAAAAAATTGGCGACAACGACCACACGATAAAGCGCCGAATAAAG
ACAAAAAAAGTGTTTATCCCCTGATAGATAATGCCACCTACATCCCGCAA
AGTATTTCTATTCAGTGTCGGGTTTCCACGCATTGTAACCTGAATTACTC
GATACAGGTTAGGGATTAGCTCGTGAGACTCAACACACACTTGGGTATGT
GCCTAATCTAGGGGTTGATTTTATGGGACTTTTAATCCGCGTTATGAGAA
TTCCAAATGCCCCAATAAGTAGTGTTTTTTTTTTTTTGCTACTTTCTCTG
TGAAGATGTTTCGTCCTCATGACTTCAAAATTTCACAAGATGAGCCCCTA
GCCGTGGTTTTCGCGCACACGACGAAAAAAAACGTACCCCAATCGACGAC
CTTGCTGAGGAGTATATTTATTCACAAGATATTCTATCAGCACAAACAAG
TACCCCAAACTACTCGAATTTAGAGTGCGGGAGAGGGCATCCTTTTCGAA
CGTAAATATTTTTCACACATGTGGTCGTTAGGGTTACGTTCGGTGGTCGT
CGGGGCATAATTAGCGTTGCATATTGTAATGGTTGTAGCTCGTTGTTGTA
ACCAGCATTCTCAGGGTCCCAAAGCACTCGAAACTTAGCTTTGCTCAGCC
TTTTTACCGTCTAGCTGTGAGCTGCACCAGTACATGATAAAAGGCGACAA
CATGGCTAACACAGGAACAGCAGTAGCAGCAGCAGCGCTTCTTCGCAATC
AGTTGTACGCCCAGTCCAAGATCTTTGAGGTTAGCTCGTTGGCAAACTTC
GCATGCACGCGGATGGATGGATTATTCATCATGACGTACGATTTATACCA
ATAGCTCCGGAAGGGCGTAGCAAACAGGTTTTTCGGTGCCCATTCTCCTA
CCAGCCATGCAACAGCATCCCAACGTTCCTCGAGAAGCCTCGCGCCGTCC
CAAATCCCATCCACCGCGTTTCGGCGGGCCGCTCATGCCCGCGATCCCGT
GCTAAGGTTGCCCATGAAGCACTCACTCTCCACCCGTGACGTCACGGCGA
TGTGGAGGACATGCAGGACACAACCAATGCGTGTTGCATAGATGGTGGGA
GGTGCGGTCGCTGCTGCTGCTTCTGTTGCTTCTTTTTTTCGGTCCCCAGG
AGACCAGGAAGGAATCCCTGCCATGCACTTATACAGTATTGCTTTCGTGC
GGCGCTTTGCCGGTTTCCCGGTGCGCTCCGCTTTCATGTCATTTCGATCC
CTGTTTGGGATGTCATCATAACGGTTTCCGCGGACGGGTAGGCAGCTAGG
TAAGCTCTACTCCATTTTTACCCAGGTAGTCTCGGAGTCAAAGCGAGTAA
ACTTCCTGCAAACACTCCCAGCTGGACTCTGTACACGAGTTACCCTACCC
ATCTGGGCGTCGGCTGCTTCTATTGCTGTATCCTGGCATGTCGTAGCAAC
GGTCGGGAGCGGCTGCTCTTGCTTATGCTGGACCATTTTCCTAGTGCCGT
CCGACCACAGGATGCGGTCTACTTGGGCTAGTGTGGGATACCGTGCGTGC
TGTGTGCGCAGATGCTACTACTGTTGCACTCAGAGGGAGGCAATGAGAGG
CAGCTCTCGCCTGTGGAGCAGTCTCTCTATTCTGTCTGTAGCTCCTAAAG
ACTTTCTGATGGCTTCTTTAGGGTTGTTCATCAGGTGACGTTGGGTCTCT
CCGTCGTTGTGTATTTGTGTGTTTTGGGGTGACGTCAACTATATATTTTT
TCTTATTTGGCCCAAACCCTCTAAAAAGCCGGCAATAAATACGTGGTCGT
TGCGAAAAATCACGTGGTCTTTGCAACACAATTACCGCCTTATTCGGCAC
TATTCAGGACTTGGGCGCACCCCTAACAGTATATTGAGAGTTGAGGGTAT
GTCGCCCACACTTTACCTATATATATGGCCATAAGGATGAACTTTGAGTA
TTTGATCTTTTTTGTCTGTTTATCAAACTCCGTGCGGCGTTATTTTTTGC
CAACCACAGGGCCGATTCAAGCTCAAGCAGAAGGACGCCGTGGTGAATAA
TAAACAGGCTTCGTGGCAGGTATGTTAGGGGGCAGGGAGGAGAGGAGGAA
GGTACTTTGTTGTATTGTTCACGAGTTGAGCAGGTATGGATCACTCATGT
AATTTACTCCAGCAATCTTCAACTTCATTCAAACGTGACCCCTTCCCTGA
TAGGACGAGAGTTCCGTCCTCTCAAGGATGCATGGCCAATAGTCTCACAA
CTACGACATGCAAAACGTACGCGCAGTAATTTTTCTAATTTTGCTGTACG
CCCCGCCCCCCCTTCTCTCCCCTCCCTCGCTCCTACGGGATCTGGTTTTC
GGACCTCATGCAAAAACGATCATAACAATGATAATAACAGGCATTTCAGT
CGAAGGGCGCGAAGAAAAAACCAAAGGGTAGCATGGCGGCGGTTTCCACT
AAGAAGGGAAGCATTTTCGCGTCCCCTGATGGCTTAGAAGGGCGAGTCGG
TGTCACGGGAAGTGGCCAAGGCTTGACAGAGCAGGCGCCTCGGAAAAAGT
TCAAGGCTACCAAAGATATTTAGGATGGGAGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8122:1717..10599-

>mRNA_H-paniculata_contig8122.16144.1 ID=mRNA_H-paniculata_contig8122.16144.1|Name=mRNA_H-paniculata_contig8122.16144.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig8122:1717..10599- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACGAGTGCACGATCCAGGAGGTGACCGCGAACGGTTACAAGGTGGCCT
TCACATCGTACGGCAACGCGGAAGAGGTTCCTTTCGAGTACCTTCAGAAG
AAGGAGACCCTGTCTCTCGCGAAGTTACGAGTGCACGATCCAGGAGGTGA
CCGCGAACGGTTACAAGGTGGCCTTCACATCGTACGGCAACGCGGAAGAG
GTTCCTTTCGAGTACCTTCAGAAGAAGGAGACCCTGTCTCTCGCGAAGGC
AAAGCAAGCCGAGACGTTAGCGGAAGCGGAGGCAACGTTCGCCATACCGG
AGAGCTTAAGGCCAACGGACGAAGATACGGAGGCAGAGCGAGAGAGGAAA
CGCAAGAAAATCAAGGCCCTCAAGGCAAAGCAAGCCGAGACGTTAGCGGA
AGCGGAGGCAACGTTCGCCATACCGGAGAGCTTAAGGCCAACGGACGAAG
ATACGGAGGCAGAGCGAGAGAGGAAACGCAAGAAAATCAAGGCCCTCAAG
GGCCGATTCAAGCTCAAGCAGAAGGACGCCGTGGTGAATAAGGCCGATTC
AAGCTCAAGCAGAAGGACGCCGTGGTGAATAA
back to top