mRNA_H-paniculata_contig81199.16139.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig81199.16139.1
Unique NamemRNA_H-paniculata_contig81199.16139.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig81199.16139.1 vs. uniprot
Match: A0A6H5JI51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI51_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 3.570e-11
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:    7 VYVDSVYETYPDSRLSVCGGAVLLRGGAISWHARTQESTAAGTAEAEYVAFGEMVNAVLFLRQV 198
            VY D+ + +    R SV GG V   GGA+SW +RTQ+     T EAEYVA G++V  +LFLRQ+
Sbjct:   29 VYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQI 92
[Close]
BLAST of mRNA_H-paniculata_contig81199.16139.1 vs. uniprot
Match: A0A6H5LB33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB33_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 4.430e-11
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   10 YVDSVYETYPDSRLSVCGGAVLLRGGAISWHARTQESTAAGTAEAEYVAFGEMVNAVLFLRQV 198
            Y D+ + +    R SV GG V   GGA+SW +RTQ+     T EAEYVA G++V  +LFLRQ+
Sbjct:   30 YADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQI 92
[Close]
BLAST of mRNA_H-paniculata_contig81199.16139.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 6.830e-11
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   10 YVDSVYETYPDSRLSVCGGAVLLRGGAISWHARTQESTAAGTAEAEYVAFGEMVNAVLFLRQV 198
            Y D+ + +    R SV GG V   GGA+SW +RTQ+     T EAEYVA GE+V  +LFLRQ+
Sbjct:   65 YADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQI 127
[Close]
BLAST of mRNA_H-paniculata_contig81199.16139.1 vs. uniprot
Match: A0A6H5JUW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW6_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.450e-10
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   10 YVDSVYETYPDSRLSVCGGAVLLRGGAISWHARTQESTAAGTAEAEYVAFGEMVNAVLFLRQV 198
            Y D+ + +    R SV GG V   GGA+SW +RTQ+     T EAEYVA G++V  +LFLRQ+
Sbjct:   60 YADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQI 122
[Close]
BLAST of mRNA_H-paniculata_contig81199.16139.1 vs. uniprot
Match: A0A6H5KL35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL35_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 3.420e-10
Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:   10 YVDSVYETYPDSRLSVCGGAVLLRGGAISWHARTQESTAAGTAEAEYVAFGEMVNAVLFLRQV 198
            + D+ + +    R SV GG V   GGA+SW +RTQ      T EAEYVA G++V  +LFLRQ+
Sbjct:   34 FADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQRCVTISTTEAEYVALGDVVKEILFLRQI 96
[Close]
BLAST of mRNA_H-paniculata_contig81199.16139.1 vs. uniprot
Match: A0A6H5JWJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ4_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.970e-10
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   10 YVDSVYETYPDSRLSVCGGAVLLRGGAISWHARTQESTAAGTAEAEYVAFGEMVNAVLFLRQV 198
            Y D+ + +    R SV GG V   GGA+SW +RTQ+     T EAEYVA G++V  +LFLRQ+
Sbjct:  105 YADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQI 167
[Close]
BLAST of mRNA_H-paniculata_contig81199.16139.1 vs. uniprot
Match: A0A6H5L8D6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D6_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 4.940e-10
Identity = 31/62 (50.00%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:   10 YVDSVYETYPDSRLSVCGGAVLLRGGAISWHARTQESTAAGTAEAEYVAFGEMVNAVLFLRQ 195
            Y D+ + T    R SV GG V   GGA+SW +RTQ+     T EAEYVA G++V  +LFLRQ
Sbjct:  278 YADADFATKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQ 339
[Close]
BLAST of mRNA_H-paniculata_contig81199.16139.1 vs. uniprot
Match: A0A6H5KN59_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN59_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 5.050e-10
Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:    4 LVYVDSVYETYPDSRLSVCGGAVLLRGGAISWHARTQESTAAGTAEAEYVAFGEMVNAVLFLRQV 198
            L Y D+ + +    R SV GG V   GGA+SW +RTQ+     T EAEYVA G++V  +LFLRQ+
Sbjct:  560 LGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQI 624
[Close]
BLAST of mRNA_H-paniculata_contig81199.16139.1 vs. uniprot
Match: A0A6H5JR79_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR79_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 5.080e-10
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   10 YVDSVYETYPDSRLSVCGGAVLLRGGAISWHARTQESTAAGTAEAEYVAFGEMVNAVLFLRQV 198
            Y D+ + +    R SV GG V   GGA+SW +RTQ+     T EAEYVA G++V  +LFLRQ+
Sbjct:  728 YADADFASQAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQI 790
[Close]
BLAST of mRNA_H-paniculata_contig81199.16139.1 vs. uniprot
Match: A0A6H5KLT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLT9_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 5.550e-10
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   10 YVDSVYETYPDSRLSVCGGAVLLRGGAISWHARTQESTAAGTAEAEYVAFGEMVNAVLFLRQV 198
            Y D+ + +    R SV GG V   GGA+SW +RTQ+     T EAEYVA G++V  +LFLRQ+
Sbjct:  175 YADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQI 237
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig81199.16139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI51_9PHAE3.570e-1148.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LB33_9PHAE4.430e-1147.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEZ8_9PHAE6.830e-1149.21Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUW6_9PHAE2.450e-1047.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL35_9PHAE3.420e-1046.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWJ4_9PHAE3.970e-1047.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8D6_9PHAE4.940e-1050.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN59_9PHAE5.050e-1047.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JR79_9PHAE5.080e-1047.62Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KLT9_9PHAE5.550e-1047.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig81199contigH-paniculata_contig81199:132..332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931017.173649-CDS-H-paniculata_contig81199:131..3321622931017.173649-CDS-H-paniculata_contig81199:131..332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81199 132..332 +
1691481552.328802-CDS-H-paniculata_contig81199:131..3321691481552.328802-CDS-H-paniculata_contig81199:131..332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81199 132..332 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig81199.16139.1prot_H-paniculata_contig81199.16139.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig81199 132..332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig81199.16139.1

>prot_H-paniculata_contig81199.16139.1 ID=prot_H-paniculata_contig81199.16139.1|Name=mRNA_H-paniculata_contig81199.16139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MLVYVDSVYETYPDSRLSVCGGAVLLRGGAISWHARTQESTAAGTAEAEY
VAFGEMVNAVLFLRQV*
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mRNA from alignment at H-paniculata_contig81199:132..332+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig81199.16139.1 ID=mRNA_H-paniculata_contig81199.16139.1|Name=mRNA_H-paniculata_contig81199.16139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig81199:132..332+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGGTTTATGTTGACTCGGTCTACGAAACGTATCCAGACAGCCGACT
CTCGGTCTGCGGCGGAGCGGTACTGCTGAGGGGGGGGGCGATCAGTTGGC
ACGCGAGAACTCAGGAGTCGACAGCGGCGGGGACAGCAGAAGCTGAGTAC
GTCGCGTTCGGGGAGATGGTGAACGCAGTACTGTTTCTGCGCCAAGTGTA
A
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Coding sequence (CDS) from alignment at H-paniculata_contig81199:132..332+

>mRNA_H-paniculata_contig81199.16139.1 ID=mRNA_H-paniculata_contig81199.16139.1|Name=mRNA_H-paniculata_contig81199.16139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig81199:132..332+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGGTTTATGTTGACTCGGTCTACGAAACGTATCCAGACAGCCGACT
CTCGGTCTGCGGCGGAGCGGTACTGCTGAGGGGGGGGGCGATCAGTTGGC
ACGCGAGAACTCAGGAGTCGACAGCGGCGGGGACAGCAGAAGCTGAGTAC
GTCGCGTTCGGGGAGATGGTGAACGCAGTACTGTTTCTGCGCCAAGTGTA
AATGTTGGTTTATGTTGACTCGGTCTACGAAACGTATCCAGACAGCCGAC
TCTCGGTCTGCGGCGGAGCGGTACTGCTGAGGGGGGGGGCGATCAGTTGG
CACGCGAGAACTCAGGAGTCGACAGCGGCGGGGACAGCAGAAGCTGAGTA
CGTCGCGTTCGGGGAGATGGTGAACGCAGTACTGTTTCTGCGCCAAGTGT
AA
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