mRNA_H-paniculata_contig81028.16124.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig81028.16124.1
Unique NamemRNA_H-paniculata_contig81028.16124.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig81028.16124.1 vs. uniprot
Match: A0A6H5L112_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L112_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 5.940e-41
Identity = 70/90 (77.78%), Postives = 79/90 (87.78%), Query Frame = 1
Query:   10 QAKNISSGYASFDYSTAPAEEAGLVKVDIAINGESVDALSFVCHKDVAQKQGREVALRLKNVIDRQQFEVVVHARMGIKPFAKERIPPYR 279
            QAK +SSGYASFDY  A  E A LVKVDI+ING+SVDALSFVCH+D AQ++GR+VA RLK VIDRQQFEVVVHA+MG +PFAKERIPPYR
Sbjct:  168 QAKTVSSGYASFDYCAAEPEAADLVKVDISINGDSVDALSFVCHRDAAQRKGRDVARRLKEVIDRQQFEVVVHAKMGARPFAKERIPPYR 257          
BLAST of mRNA_H-paniculata_contig81028.16124.1 vs. uniprot
Match: D8LK14_ECTSI (Translation factor GUF1 homolog, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK14_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 1.830e-39
Identity = 71/90 (78.89%), Postives = 80/90 (88.89%), Query Frame = 1
Query:   10 QAKNISSGYASFDYSTAPAEEAGLVKVDIAINGESVDALSFVCHKDVAQKQGREVALRLKNVIDRQQFEVVVHARMGIKPFAKERIPPYR 279
            QAK +SSGYASFDYS A  E A LVKVDI+ING+SVDALSFVCH+D AQ++GR+VA RLK VIDRQQFEVVVHA+MG +PFAKERIPPYR
Sbjct:  550 QAKTVSSGYASFDYSAAEPEAADLVKVDISINGDSVDALSFVCHRDAAQRKGRDVARRLKEVIDRQQFEVVVHAKMGARPFAKERIPPYR 639          
BLAST of mRNA_H-paniculata_contig81028.16124.1 vs. uniprot
Match: A0A7S1GBG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GBG0_9STRA)

HSP 1 Score: 113 bits (283), Expect = 9.200e-31
Identity = 50/87 (57.47%), Postives = 70/87 (80.46%), Query Frame = 1
Query:   19 NISSGYASFDYSTAPAEEAGLVKVDIAINGESVDALSFVCHKDVAQKQGREVALRLKNVIDRQQFEVVVHARMGIKPFAKERIPPYR 279
            ++S+GYASFDY  A  E+A +VKVD+ +NG+ +DALSFVCH+D AQ +GR V  RL+ +I+RQQ+E+V+ A +G K FA+ERIPP+R
Sbjct:    1 SVSAGYASFDYEAAGEEQADIVKVDVLLNGDVLDALSFVCHRDAAQAKGRRVCERLRKLINRQQYEIVIQAAIGAKIFARERIPPFR 87          
BLAST of mRNA_H-paniculata_contig81028.16124.1 vs. uniprot
Match: A0A7S2SUD5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUD5_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.480e-28
Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = 1
Query:    1 FFRQAKNISSGYASFDYSTAPAEEAGLVKVDIAINGESVDALSFVCHKDVAQKQGREVALRLKNVIDRQQFEVVVHARMGIKPFAKERIPPYR 279
            F    KN+SSGYA+F+YS A    A LVKVD+++NGE VDALSFV H+D AQ QGR VA RL+ VI RQQFEVV+ A++G+K  A+ERI P+R
Sbjct:  281 FHDTVKNLSSGYATFNYSEATPRAANLVKVDLSVNGEVVDALSFVSHRDKAQIQGRRVAKRLQGVIRRQQFEVVIQAKVGVKVIARERIAPFR 373          
BLAST of mRNA_H-paniculata_contig81028.16124.1 vs. uniprot
Match: A0A067CRD4_SAPPC (Translation factor GUF1 homolog, mitochondrial n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CRD4_SAPPC)

HSP 1 Score: 112 bits (279), Expect = 9.250e-27
Identity = 51/93 (54.84%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    1 FFRQAKNISSGYASFDYSTAPAEEAGLVKVDIAINGESVDALSFVCHKDVAQKQGREVALRLKNVIDRQQFEVVVHARMGIKPFAKERIPPYR 279
            F+ + K ++SGYAS +Y     +EA +VKVD+ ING+ +DALSFVCH+  A   GR + L+LKNVIDRQQ+E+ + A +G K FAKERIPP+R
Sbjct:  496 FYNELKTVTSGYASLNYREIEPQEADIVKVDVLINGKILDALSFVCHRSKATAAGRALCLKLKNVIDRQQYEINIQATLGAKIFAKERIPPFR 588          
BLAST of mRNA_H-paniculata_contig81028.16124.1 vs. uniprot
Match: A0A418F0I7_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418F0I7_9STRA)

HSP 1 Score: 108 bits (270), Expect = 9.720e-27
Identity = 50/93 (53.76%), Postives = 68/93 (73.12%), Query Frame = 1
Query:    1 FFRQAKNISSGYASFDYSTAPAEEAGLVKVDIAINGESVDALSFVCHKDVAQKQGREVALRLKNVIDRQQFEVVVHARMGIKPFAKERIPPYR 279
            F+ + K I+SGYAS +Y     +++ +VKVDI ING+ +DALSFVCH+  A   GR + L+LKNVIDRQQ+E+ + A +G K FAKERI P+R
Sbjct:  155 FYNELKTITSGYASLNYREVEPQQSDIVKVDILINGKILDALSFVCHRSKATAAGRALCLKLKNVIDRQQYEISIQATLGAKVFAKERIAPFR 247          
BLAST of mRNA_H-paniculata_contig81028.16124.1 vs. uniprot
Match: A0A5D6XXH5_9STRA (Translation factor GUF1 homolog, mitochondrial n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXH5_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.220e-26
Identity = 52/93 (55.91%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    1 FFRQAKNISSGYASFDYSTAPAEEAGLVKVDIAINGESVDALSFVCHKDVAQKQGREVALRLKNVIDRQQFEVVVHARMGIKPFAKERIPPYR 279
            F+ + K ISSGYA+ +Y     ++A +VKVDI ING+ +DALSFVCH+  A + GR + L+LK VIDRQQ+E+ + A +G K FAKERIPPYR
Sbjct:  474 FYNELKTISSGYATLNYREVEPQKADIVKVDILINGKVLDALSFVCHRSKATQDGRALCLKLKKVIDRQQYEIAIQACLGGKVFAKERIPPYR 566          
BLAST of mRNA_H-paniculata_contig81028.16124.1 vs. uniprot
Match: A0A5A8D8U6_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D8U6_CAFRO)

HSP 1 Score: 107 bits (266), Expect = 2.700e-26
Identity = 52/93 (55.91%), Postives = 68/93 (73.12%), Query Frame = 1
Query:    1 FFRQAKNISSGYASFDYSTAPAEEAGLVKVDIAINGESVDALSFVCHKDVAQKQGREVALRLKNVIDRQQFEVVVHARMGIKPFAKERIPPYR 279
            FF + K+ ++GYA+FDY  A  E + +VK+D+ +NG  VD+LSFV H+  A+ QGR VA RL+ VI RQQFEVV+ A  G K FA+ERIPPYR
Sbjct:  135 FFDKLKSATAGYATFDYEPAGYEASNVVKIDMLLNGAPVDSLSFVAHRSSAEVQGRRVAQRLRAVIRRQQFEVVIQAAFGKKIFARERIPPYR 227          
BLAST of mRNA_H-paniculata_contig81028.16124.1 vs. uniprot
Match: W7TE65_9STRA (Translation factor GUF1 homolog, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TE65_9STRA)

HSP 1 Score: 110 bits (274), Expect = 4.630e-26
Identity = 51/88 (57.95%), Postives = 68/88 (77.27%), Query Frame = 1
Query:   16 KNISSGYASFDYSTAPAEEAGLVKVDIAINGESVDALSFVCHKDVAQKQGREVALRLKNVIDRQQFEVVVHARMGIKPFAKERIPPYR 279
            KN+S+GYAS +Y  A      LVKV++A+NGE VDALSFVCH+  A+++GR VAL+LKNVIDRQ FE+ + A++G K  A+ER+ PYR
Sbjct:  550 KNVSAGYASLNYKEAGYASDDLVKVELALNGEEVDALSFVCHRTKAEREGRRVALKLKNVIDRQNFEINIQAKVGRKVVARERVAPYR 637          
BLAST of mRNA_H-paniculata_contig81028.16124.1 vs. uniprot
Match: A0A8K1C3F0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3F0_PYTOL)

HSP 1 Score: 109 bits (273), Expect = 6.270e-26
Identity = 51/93 (54.84%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    1 FFRQAKNISSGYASFDYSTAPAEEAGLVKVDIAINGESVDALSFVCHKDVAQKQGREVALRLKNVIDRQQFEVVVHARMGIKPFAKERIPPYR 279
            F+ + K ISSGYA+ +Y    A++A +VKVDI ING+ +DALSFVCH+  A  +GR + ++LK VIDRQQ+E+ + A +G K FAKERI PYR
Sbjct:  533 FYNELKTISSGYATLNYREIEAQQADIVKVDILINGKVLDALSFVCHRSKATVEGRALCVKLKKVIDRQQYEISIQASLGAKIFAKERIAPYR 625          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig81028.16124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L112_9PHAE5.940e-4177.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK14_ECTSI1.830e-3978.89Translation factor GUF1 homolog, mitochondrial n=1... [more]
A0A7S1GBG0_9STRA9.200e-3157.47Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2SUD5_9STRA1.480e-2861.29Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A067CRD4_SAPPC9.250e-2754.84Translation factor GUF1 homolog, mitochondrial n=4... [more]
A0A418F0I7_9STRA9.720e-2753.76Uncharacterized protein n=7 Tax=Aphanomyces astaci... [more]
A0A5D6XXH5_9STRA1.220e-2655.91Translation factor GUF1 homolog, mitochondrial n=1... [more]
A0A5A8D8U6_CAFRO2.700e-2655.91Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
W7TE65_9STRA4.630e-2657.95Translation factor GUF1 homolog, mitochondrial n=2... [more]
A0A8K1C3F0_PYTOL6.270e-2654.84Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig81028contigH-paniculata_contig81028:141..422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.1
Seed ortholog evalue4e-33
Seed eggNOG ortholog2880.D8LK14
KEGG koko:K03596,ko:K21594
KEGG Pathwayko05134,map05134
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0097159,GO:0097367,GO:1901265,GO:1901363
EggNOG free text desc.GTPase activity
EggNOG OGsCOG0481@1,KOG0462@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029
Exons1
Model size282
Cds size282
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931015.2103539-CDS-H-paniculata_contig81028:140..4221622931015.2103539-CDS-H-paniculata_contig81028:140..422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81028 141..422 -
1691481551.4035404-CDS-H-paniculata_contig81028:140..4221691481551.4035404-CDS-H-paniculata_contig81028:140..422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81028 141..422 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig81028.16124.1prot_H-paniculata_contig81028.16124.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig81028 141..422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig81028.16124.1

>prot_H-paniculata_contig81028.16124.1 ID=prot_H-paniculata_contig81028.16124.1|Name=mRNA_H-paniculata_contig81028.16124.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
FFRQAKNISSGYASFDYSTAPAEEAGLVKVDIAINGESVDALSFVCHKDV
AQKQGREVALRLKNVIDRQQFEVVVHARMGIKPFAKERIPPYR*
back to top

mRNA from alignment at H-paniculata_contig81028:141..422-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig81028.16124.1 ID=mRNA_H-paniculata_contig81028.16124.1|Name=mRNA_H-paniculata_contig81028.16124.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=282bp|location=Sequence derived from alignment at H-paniculata_contig81028:141..422- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTTTCGGCAGGCTAAAAATATATCTTCGGGCTACGCCAGCTTCGACTA TTCTACGGCGCCGGCTGAAGAGGCGGGTCTTGTGAAAGTCGATATTGCCA TTAACGGAGAGAGTGTGGACGCACTCAGCTTCGTGTGCCACAAAGACGTG GCGCAAAAGCAAGGCCGAGAGGTGGCCCTGAGGCTCAAAAATGTGATCGA CAGGCAGCAGTTCGAGGTGGTTGTGCACGCGAGAATGGGCATTAAGCCTT TCGCCAAGGAGCGCATACCTCCATACCGGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig81028:141..422-

>mRNA_H-paniculata_contig81028.16124.1 ID=mRNA_H-paniculata_contig81028.16124.1|Name=mRNA_H-paniculata_contig81028.16124.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig81028:141..422- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTTTCGGCAGGCTAAAAATATATCTTCGGGCTACGCCAGCTTCGACTA
TTCTACGGCGCCGGCTGAAGAGGCGGGTCTTGTGAAAGTCGATATTGCCA
TTAACGGAGAGAGTGTGGACGCACTCAGCTTCGTGTGCCACAAAGACGTG
GCGCAAAAGCAAGGCCGAGAGGTGGCCCTGAGGCTCAAAAATGTGATCGA
CAGGCAGCAGTTCGAGGTGGTTGTGCACGCGAGAATGGGCATTAAGCCTT
TCGCCAAGGAGCGCATACCTCCATACCGGTGATTTTTTCGGCAGGCTAAA
AATATATCTTCGGGCTACGCCAGCTTCGACTATTCTACGGCGCCGGCTGA
AGAGGCGGGTCTTGTGAAAGTCGATATTGCCATTAACGGAGAGAGTGTGG
ACGCACTCAGCTTCGTGTGCCACAAAGACGTGGCGCAAAAGCAAGGCCGA
GAGGTGGCCCTGAGGCTCAAAAATGTGATCGACAGGCAGCAGTTCGAGGT
GGTTGTGCACGCGAGAATGGGCATTAAGCCTTTCGCCAAGGAGCGCATAC
CTCCATACCGGTGA
back to top