mRNA_H-paniculata_contig80974.16111.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig80974.16111.1
Unique NamemRNA_H-paniculata_contig80974.16111.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig80974.16111.1 vs. uniprot
Match: Q60DG5_ORYSJ (Putative polyprotein n=3 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q60DG5_ORYSJ)

HSP 1 Score: 92.8 bits (229), Expect = 5.320e-20
Identity = 38/76 (50.00%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    7 SAVYCLNRAPTRSHNGGTPYEKWHGETPKLDHVRVFGCTAYVMFQSQQRRKLDDKAWARVFLGHDEDSPSYRVYNP 234
            +AVY LNR+PT+S +G TPYE WHG  P ++H++VFGC  YV       RKLDD+    VF+G+++ S +YR+Y+P
Sbjct:  374 AAVYLLNRSPTKSLDGVTPYEAWHGRRPSVEHLKVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDP 449          
BLAST of mRNA_H-paniculata_contig80974.16111.1 vs. uniprot
Match: Q7XTU6_ORYSJ (OSJNBb0034I13.10 protein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XTU6_ORYSJ)

HSP 1 Score: 92.8 bits (229), Expect = 5.370e-20
Identity = 38/76 (50.00%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    7 SAVYCLNRAPTRSHNGGTPYEKWHGETPKLDHVRVFGCTAYVMFQSQQRRKLDDKAWARVFLGHDEDSPSYRVYNP 234
            +AVY LNR+PT++ +G TPYE WHG  P ++H+RVFGC  YV       RKLDD+    VF+G+++ S +YR+Y+P
Sbjct:  711 AAVYVLNRSPTKALDGVTPYEAWHGRRPSVEHLRVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDP 786          
BLAST of mRNA_H-paniculata_contig80974.16111.1 vs. uniprot
Match: Q7G6A8_ORYSJ (Os10g0130700 protein n=3 Tax=Oryza sativa TaxID=4530 RepID=Q7G6A8_ORYSJ)

HSP 1 Score: 92.8 bits (229), Expect = 5.370e-20
Identity = 38/76 (50.00%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    7 SAVYCLNRAPTRSHNGGTPYEKWHGETPKLDHVRVFGCTAYVMFQSQQRRKLDDKAWARVFLGHDEDSPSYRVYNP 234
            +AVY LNR+PT++ NG TP+E WHG  P ++H+RVFGC  YV       RKLDD+    VF+G+++ S +YR+Y+P
Sbjct:  711 AAVYVLNRSPTKALNGVTPHEAWHGRRPSVEHLRVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDP 786          
BLAST of mRNA_H-paniculata_contig80974.16111.1 vs. uniprot
Match: A0A6G1CEI4_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1CEI4_9ORYZ)

HSP 1 Score: 86.7 bits (213), Expect = 1.660e-19
Identity = 35/76 (46.05%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    7 SAVYCLNRAPTRSHNGGTPYEKWHGETPKLDHVRVFGCTAYVMFQSQQRRKLDDKAWARVFLGHDEDSPSYRVYNP 234
            +AVY LNR+PT+S +G  PYE WHG  P ++H+RVFGC  +V       RKLDD+    VF+G+++ + +Y++Y+P
Sbjct:   32 AAVYVLNRSPTKSLDGVMPYEAWHGRRPMVEHLRVFGCVGHVKTARPNLRKLDDRGTRMVFIGYEDGTKAYQMYDP 107          
BLAST of mRNA_H-paniculata_contig80974.16111.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 91.3 bits (225), Expect = 1.860e-19
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = 1
Query:    1 MRSAVYCLNRAPTRSHNGGTPYEKWHGETPKLDHVRVFGCTAYVMFQSQQRRKLDDKAWARVFLGHDEDSPSYRVYNPENK------SMRFDE 261
            + ++VY LN  PT++  G TP+E WHG TP ++H++VFGC  Y +    +R KLD K+   +FLG+   S  YR+YNP  K      +++FDE
Sbjct:  588 VNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNPATKKILVSRNVKFDE 680          
BLAST of mRNA_H-paniculata_contig80974.16111.1 vs. uniprot
Match: A0A6A3C4D2_HIBSY (FAD-binding Berberine family protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C4D2_HIBSY)

HSP 1 Score: 90.9 bits (224), Expect = 2.550e-19
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 1
Query:    1 MRSAVYCLNRAPTRSHNGGTPYEKWHGETPKLDHVRVFGCTAYVMFQSQQRRKLDDKAWARVFLGHDEDSPSYRVYNPENKSM------RFDEEDF 270
            +R AVY LNR PT+S    TP E W G+ P + H+++FGC AY     Q R+KLDD+    +F+G+DE S +YR+YNP  K +       FDE D+
Sbjct:  476 VRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 571          
BLAST of mRNA_H-paniculata_contig80974.16111.1 vs. uniprot
Match: A0A6A3ACL1_HIBSY (Putative cyclic nucleotide-gated ion channel 8 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3ACL1_HIBSY)

HSP 1 Score: 90.9 bits (224), Expect = 2.550e-19
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 1
Query:    1 MRSAVYCLNRAPTRSHNGGTPYEKWHGETPKLDHVRVFGCTAYVMFQSQQRRKLDDKAWARVFLGHDEDSPSYRVYNPENKSM------RFDEEDF 270
            +R AVY LNR PT+S    TP E W G+ P + H+++FGC AY     Q R+KLDD+    +F+G+DE S +YR+YNP  K +       FDE D+
Sbjct:  418 VRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 513          
BLAST of mRNA_H-paniculata_contig80974.16111.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY)

HSP 1 Score: 90.9 bits (224), Expect = 2.560e-19
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 1
Query:    1 MRSAVYCLNRAPTRSHNGGTPYEKWHGETPKLDHVRVFGCTAYVMFQSQQRRKLDDKAWARVFLGHDEDSPSYRVYNPENKSM------RFDEEDF 270
            +R AVY LNR PT+S    TP E W G+ P + H+++FGC AY     Q R+KLDD+    +F+G+DE S +YR+YNP  K +       FDE D+
Sbjct: 1444 VRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 1539          
BLAST of mRNA_H-paniculata_contig80974.16111.1 vs. uniprot
Match: A0A2P6PN01_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6PN01_ROSCH)

HSP 1 Score: 89.4 bits (220), Expect = 8.720e-19
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   10 AVYCLNRAPTRSHNGGTPYEKWHGETPKLDHVRVFGCTAYVMFQSQQRRKLDDKAWARVFLGHDEDSPSYRVYNPENKSM 249
            AVY LNR+P+RS +G TPYE W G  P + H+RVFGC A+       R+KLDDKA   +F+G+   +  Y++YNP+ K +
Sbjct:  612 AVYILNRSPSRSIDGSTPYEVWSGHKPNIQHMRVFGCIAFAHVPDHIRKKLDDKADKCIFIGYSTVTKGYKLYNPKTKKV 691          
BLAST of mRNA_H-paniculata_contig80974.16111.1 vs. uniprot
Match: A0A446QWW7_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446QWW7_TRITD)

HSP 1 Score: 88.6 bits (218), Expect = 1.650e-18
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    1 MRSAVYCLNRAPTRSHNGGTPYEKWHGETPKLDHVRVFGCTAYVMFQSQQRRKLDDKAWARVFLGHDEDSPSYRVYNP 234
            + +AVY LNRA TRS +G TPYE WHG  P++ H+RVFGC A+V       +KLDD++   V +G++  S +YRVY+P
Sbjct:  712 VTTAVYLLNRAFTRSVDGATPYEAWHGRKPEVSHLRVFGCVAHVKSARPLLKKLDDRSTPMVHIGYEPGSKAYRVYDP 789          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig80974.16111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q60DG5_ORYSJ5.320e-2050.00Putative polyprotein n=3 Tax=Oryza sativa subsp. j... [more]
Q7XTU6_ORYSJ5.370e-2050.00OSJNBb0034I13.10 protein n=2 Tax=Oryza sativa subs... [more]
Q7G6A8_ORYSJ5.370e-2050.00Os10g0130700 protein n=3 Tax=Oryza sativa TaxID=45... [more]
A0A6G1CEI4_9ORYZ1.660e-1946.05Uncharacterized protein n=1 Tax=Oryza meyeriana va... [more]
A0A151T355_CAJCA1.860e-1941.94Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3C4D2_HIBSY2.550e-1944.79FAD-binding Berberine family protein n=1 Tax=Hibis... [more]
A0A6A3ACL1_HIBSY2.550e-1944.79Putative cyclic nucleotide-gated ion channel 8 n=1... [more]
A0A6A2WXP0_HIBSY2.560e-1944.79Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=10... [more]
A0A2P6PN01_ROSCH8.720e-1947.50Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A446QWW7_TRITD1.650e-1850.00Uncharacterized protein n=1 Tax=Triticum turgidum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig80974contigH-paniculata_contig80974:2..277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score89.0
Seed ortholog evalue1.3e-15
Seed eggNOG ortholog15368.BRADI2G01640.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size276
Cds size276
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931012.9466374-CDS-H-paniculata_contig80974:1..2771622931012.9466374-CDS-H-paniculata_contig80974:1..277Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig80974 2..277 +
1691481550.433998-CDS-H-paniculata_contig80974:1..2771691481550.433998-CDS-H-paniculata_contig80974:1..277Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig80974 2..277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig80974.16111.1prot_H-paniculata_contig80974.16111.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig80974 2..277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig80974.16111.1

>prot_H-paniculata_contig80974.16111.1 ID=prot_H-paniculata_contig80974.16111.1|Name=mRNA_H-paniculata_contig80974.16111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
MRSAVYCLNRAPTRSHNGGTPYEKWHGETPKLDHVRVFGCTAYVMFQSQQ
RRKLDDKAWARVFLGHDEDSPSYRVYNPENKSMRFDEEDFVT
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mRNA from alignment at H-paniculata_contig80974:2..277+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig80974.16111.1 ID=mRNA_H-paniculata_contig80974.16111.1|Name=mRNA_H-paniculata_contig80974.16111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=276bp|location=Sequence derived from alignment at H-paniculata_contig80974:2..277+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCTCGGCAGTGTATTGCCTAAATCGCGCCCCGACACGATCGCACAA CGGAGGAACGCCGTACGAAAAATGGCACGGCGAAACACCAAAGTTGGACC ACGTTCGTGTCTTTGGCTGCACGGCGTATGTTATGTTTCAGTCGCAACAG AGACGCAAGCTCGACGACAAAGCATGGGCGAGGGTGTTTCTGGGGCACGA CGAGGACAGCCCAAGTTATCGCGTATATAACCCAGAAAATAAGAGCATGA GATTTGACGAAGAGGACTTCGTAACG
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Coding sequence (CDS) from alignment at H-paniculata_contig80974:2..277+

>mRNA_H-paniculata_contig80974.16111.1 ID=mRNA_H-paniculata_contig80974.16111.1|Name=mRNA_H-paniculata_contig80974.16111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig80974:2..277+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCTCGGCAGTGTATTGCCTAAATCGCGCCCCGACACGATCGCACAA
CGGAGGAACGCCGTACGAAAAATGGCACGGCGAAACACCAAAGTTGGACC
ACGTTCGTGTCTTTGGCTGCACGGCGTATGTTATGTTTCAGTCGCAACAG
AGACGCAAGCTCGACGACAAAGCATGGGCGAGGGTGTTTCTGGGGCACGA
CGAGGACAGCCCAAGTTATCGCGTATATAACCCAGAAAATAAGAGCATGA
GATTTGACGAAGAGGACTTCGTAACGATGCGCTCGGCAGTGTATTGCCTA
AATCGCGCCCCGACACGATCGCACAACGGAGGAACGCCGTACGAAAAATG
GCACGGCGAAACACCAAAGTTGGACCACGTTCGTGTCTTTGGCTGCACGG
CGTATGTTATGTTTCAGTCGCAACAGAGACGCAAGCTCGACGACAAAGCA
TGGGCGAGGGTGTTTCTGGGGCACGACGAGGACAGCCCAAGTTATCGCGT
ATATAACCCAGAAAATAAGAGCATGAGATTTGACGAAGAGGACTTCGTAA
CG
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