mRNA_H-paniculata_contig80962.16110.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig80962.16110.1
Unique NamemRNA_H-paniculata_contig80962.16110.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig80962.16110.1 vs. uniprot
Match: A0A6H5KUT1_9PHAE (Aldo_ket_red domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUT1_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.450e-25
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 1
Query:    1 WEIAWRELEALYNEGSVRAIGVSNFSASLLRELLAMATVPPVVVQNWMDPFNQDKAVRSLCAENG 195
            W+ AWR+LE +Y++G+VRAIGVSNFS SLLRELL MATV P  VQNWMDPF+QD+ VR+LCAE+G
Sbjct:  189 WQDAWRQLEDMYSKGAVRAIGVSNFSESLLRELLGMATVAPAAVQNWMDPFHQDREVRALCAEHG 253          
BLAST of mRNA_H-paniculata_contig80962.16110.1 vs. uniprot
Match: A0A7S2SM38_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SM38_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 8.270e-18
Identity = 38/64 (59.38%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    1 WEIAWRELEALYNEGSVRAIGVSNFSASLLRELLAMATVPPVVVQNWMDPFNQDKAVRSLCAEN 192
            W+ +WR LE  YN+G ++AIGVSNF    ++ELL  A V P +VQNWMDPFNQD  VR LC EN
Sbjct:  156 WKDSWRVLEDYYNKGIIKAIGVSNFEYDQMQELLEFANVKPHMVQNWMDPFNQDTDVRRLCDEN 219          
BLAST of mRNA_H-paniculata_contig80962.16110.1 vs. uniprot
Match: UPI000C04E55C (uncharacterized protein LOC111337205 isoform X2 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C04E55C)

HSP 1 Score: 82.0 bits (201), Expect = 1.070e-16
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 WEIAWRELEALYNEGSVRAIGVSNFSASLLRELLAMATVPPVVVQNWMDPFNQDKAVRSLCAENG 195
            WE +W+ LE+L N+G +R+IGVSNF    L+ LL +A V P +VQN+ DPFNQD+A R  C +NG
Sbjct:  544 WEDSWKALESLVNKGKIRSIGVSNFEVEDLKRLLEIAKVRPSIVQNFFDPFNQDRATREFCEQNG 608          
BLAST of mRNA_H-paniculata_contig80962.16110.1 vs. uniprot
Match: A0A2B4RRF1_STYPI (Prostaglandin F synthase n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RRF1_STYPI)

HSP 1 Score: 82.0 bits (201), Expect = 1.070e-16
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 WEIAWRELEALYNEGSVRAIGVSNFSASLLRELLAMATVPPVVVQNWMDPFNQDKAVRSLCAENG 195
            WE +W+ LE+L N+G +R+IGVSNF    L+ LL +A V P +VQN+ DPFNQD+A R  C +NG
Sbjct:  580 WEDSWKALESLVNKGKIRSIGVSNFEVEDLKRLLEIAKVRPSIVQNFFDPFNQDRATREFCEQNG 644          
BLAST of mRNA_H-paniculata_contig80962.16110.1 vs. uniprot
Match: R1FJK4_EMIHU (ShKT domain-containing protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FJK4_EMIHU)

HSP 1 Score: 80.5 bits (197), Expect = 1.750e-16
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 WEIAWRELEALYNEGSVRAIGVSNFSASLLRELLAMATVPPVVVQNWMDPFNQDKAVRSLCAENG 195
            W  +WR LE+LY +G VRA+GVSNFS   L++LL  A  PP +VQ+WMDP +Q++ +R +C  +G
Sbjct:  112 WRESWRALESLYEQGQVRALGVSNFSPDELQQLLGFARTPPHIVQSWMDPLHQERPLREVCRAHG 176          
BLAST of mRNA_H-paniculata_contig80962.16110.1 vs. uniprot
Match: A0A7S2UWQ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWQ9_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.930e-16
Identity = 39/69 (56.52%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    1 WEIAWRELEALYNEGSVRAIGVSNFSASLLRELLAMATVP----PVVVQNWMDPFNQDKAVRSLCAENG 195
            W+ AW  L+  Y  G VRAIGVSNF+ + LREL  M  +P    P VVQNWMDP++QD+AVR  C ENG
Sbjct:  138 WKDAWEVLQEWYLAGKVRAIGVSNFNTAQLRELWVMGGLPGGVRPHVVQNWMDPYHQDRAVRRWCKENG 206          
BLAST of mRNA_H-paniculata_contig80962.16110.1 vs. uniprot
Match: A0A067D488_SAPPC (Aldo_ket_red domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D488_SAPPC)

HSP 1 Score: 79.7 bits (195), Expect = 3.570e-16
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    1 WEIAWRELEALYNEGSVRAIGVSNFSASLLRELLAMATVPPVVVQNWMDPFNQDKAVRSLCAENG 195
            W +AWRELE LY  G +RA+G SNF A+ L++L AMAT PP VVQ W+DPF+Q    R+     G
Sbjct:  164 WRLAWRELERLYENGKIRALGASNFDATQLQDLWAMATTPPHVVQMWVDPFHQANDERAFVTRRG 228          
BLAST of mRNA_H-paniculata_contig80962.16110.1 vs. uniprot
Match: A0A7S3JU92_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JU92_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 4.110e-16
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 WEIAWRELEALYNEGSVRAIGVSNFSASLLRELLAMATVPPVVVQNWMDPFNQDKAVRSLCAEN 192
            W  +WR +E  Y +G VRAIG+SNF+   LR L   A + P +VQNWMDPF+QD AVR+ C +N
Sbjct:  144 WRDSWRAMETAYRQGLVRAIGISNFNLDELRHLQDFAAIKPHLVQNWMDPFHQDSAVRAFCQQN 207          
BLAST of mRNA_H-paniculata_contig80962.16110.1 vs. uniprot
Match: A0A1V9ZPV7_9STRA (Aldo_ket_red domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZPV7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 9.600e-16
Identity = 34/65 (52.31%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 WEIAWRELEALYNEGSVRAIGVSNFSASLLRELLAMATVPPVVVQNWMDPFNQDKAVRSLCAENG 195
            W+ AW++LE LY++G +RA+GVSNF+ + L+EL ++A++PP VVQ W+DPF+Q K   SL   NG
Sbjct:  102 WKSAWKDLENLYHDGKIRALGVSNFNLNQLQELWSVASIPPHVVQIWIDPFHQAKPEGSLFLGNG 166          
BLAST of mRNA_H-paniculata_contig80962.16110.1 vs. uniprot
Match: A7RUA2_NEMVE (Predicted protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RUA2_NEMVE)

HSP 1 Score: 75.9 bits (185), Expect = 3.970e-15
Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 WEIAWRELEALYNEGSVRAIGVSNFSASLLRELLAMATVPPVVVQNWMDPFNQDKAVRSLCAENG 195
            W+ +W+ +E L+ +G +R++GVSNF+   L+EL+  ATVP   VQNW DPF+QD+  R  C ++G
Sbjct:  101 WKESWKAMEELHRQGKIRSLGVSNFNVDELQELVNFATVPVSAVQNWFDPFHQDRKARRFCNKHG 165          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig80962.16110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUT1_9PHAE2.450e-2572.31Aldo_ket_red domain-containing protein n=2 Tax=Ect... [more]
A0A7S2SM38_9STRA8.270e-1859.38Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
UPI000C04E55C1.070e-1653.85uncharacterized protein LOC111337205 isoform X2 n=... [more]
A0A2B4RRF1_STYPI1.070e-1653.85Prostaglandin F synthase n=1 Tax=Stylophora pistil... [more]
R1FJK4_EMIHU1.750e-1650.77ShKT domain-containing protein n=3 Tax=Emiliania h... [more]
A0A7S2UWQ9_9STRA2.930e-1656.52Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A067D488_SAPPC3.570e-1653.85Aldo_ket_red domain-containing protein n=1 Tax=Sap... [more]
A0A7S3JU92_9STRA4.110e-1653.13Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A1V9ZPV7_9STRA9.600e-1652.31Aldo_ket_red domain-containing protein n=1 Tax=Thr... [more]
A7RUA2_NEMVE3.970e-1546.15Predicted protein (Fragment) n=1 Tax=Nematostella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig80962contigH-paniculata_contig80962:4..198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue1.4e-21
Seed eggNOG ortholog2880.D8LDN7
KEGG rclassRC00087,RC00088,RC00099,RC00108,RC00133,RC00205,RC00670
KEGG koko:K00002,ko:K00011
KEGG ReactionR00746,R01036,R01041,R01093,R01095,R01431,R01481,R01758,R01759,R01787,R02531,R02577,R04285,R05231,R11764
KEGG Pathwayko00010,ko00040,ko00051,ko00052,ko00561,ko00790,ko00930,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00040,map00051,map00052,map00561,map00790,map00930,map01100,map01110,map01120,map01130,map01220
KEGG ModuleM00014
Hectar predicted targeting categoryother localisation
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG0656@1,KOG1577@2759
EC1.1.1.2,1.1.1.21
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931012.9027781-CDS-H-paniculata_contig80962:3..1981622931012.9027781-CDS-H-paniculata_contig80962:3..198Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig80962 4..198 +
1691481550.4229856-CDS-H-paniculata_contig80962:3..1981691481550.4229856-CDS-H-paniculata_contig80962:3..198Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig80962 4..198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig80962.16110.1prot_H-paniculata_contig80962.16110.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig80962 4..198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig80962.16110.1

>prot_H-paniculata_contig80962.16110.1 ID=prot_H-paniculata_contig80962.16110.1|Name=mRNA_H-paniculata_contig80962.16110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
WEIAWRELEALYNEGSVRAIGVSNFSASLLRELLAMATVPPVVVQNWMDP
FNQDKAVRSLCAENG
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mRNA from alignment at H-paniculata_contig80962:4..198+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig80962.16110.1 ID=mRNA_H-paniculata_contig80962.16110.1|Name=mRNA_H-paniculata_contig80962.16110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig80962:4..198+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGAAATCGCGTGGAGGGAGCTAGAGGCACTCTACAACGAGGGCTCCGT TCGGGCGATAGGAGTCTCTAACTTCTCGGCGAGTTTGTTGCGAGAGCTAC TTGCGATGGCAACTGTGCCCCCCGTCGTTGTACAAAACTGGATGGACCCG TTCAATCAAGACAAGGCTGTGCGTTCACTCTGCGCAGAGAACGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig80962:4..198+

>mRNA_H-paniculata_contig80962.16110.1 ID=mRNA_H-paniculata_contig80962.16110.1|Name=mRNA_H-paniculata_contig80962.16110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig80962:4..198+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGAAATCGCGTGGAGGGAGCTAGAGGCACTCTACAACGAGGGCTCCGT
TCGGGCGATAGGAGTCTCTAACTTCTCGGCGAGTTTGTTGCGAGAGCTAC
TTGCGATGGCAACTGTGCCCCCCGTCGTTGTACAAAACTGGATGGACCCG
TTCAATCAAGACAAGGCTGTGCGTTCACTCTGCGCAGAGAACGGTTGGGA
AATCGCGTGGAGGGAGCTAGAGGCACTCTACAACGAGGGCTCCGTTCGGG
CGATAGGAGTCTCTAACTTCTCGGCGAGTTTGTTGCGAGAGCTACTTGCG
ATGGCAACTGTGCCCCCCGTCGTTGTACAAAACTGGATGGACCCGTTCAA
TCAAGACAAGGCTGTGCGTTCACTCTGCGCAGAGAACGGT
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