mRNA_H-paniculata_contig809.16101.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig809.16101.1 vs. uniprot
Match: D8LLI3_ECTSI (Presumed helicase required for RNA polymerase II transcription termination and processing of RNAs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI3_ECTSI) HSP 1 Score: 727 bits (1876), Expect = 4.050e-224 Identity = 497/987 (50.35%), Postives = 598/987 (60.59%), Query Frame = 2
Query: 4913 PERPRLIPLLLWDRLSLEFNPSQLRAVWAAVATVRETQLEREREQERVRRWELEKNAVLTSSKVADSSPSAQ-LASSNDPTGDGGGGPGDGSGGTRGALGEGGVVLLQGPPGTGKTRTVLGVVSAILARDKEKAPGTGAAGTGDGRNGLGMTLEVRPKQKRPGGAARLAAPKTHQRVLVCAPSNGAVDELTQRLADPSGGVWDQRGKPIAPRVIRVGTPSEGAADRVRPVTLDFQVEERVKLHPKSIALRDAEMRINKAYSRIGEAERDMRAAN-GE-----GTASDGNRRHQFMSEIRRLRNEILKAKRVRQDSIRGLEAERGRLRHSLVGNAQASVVCATLSGCGSGNLVDVVASSRKGFDTVVVDEACQATELSTLIPLSLGCKRLILVGDPRQLPATVISQKAAKLNLEISLFERLERAGHPVHMLTIQYRMHPEIRAFPSQSFYEDRLTDAPCVK-QMEVGDTSASSSSSALPLPLGPCFPPFLLIDVSTGQENRAGNSYQNPTESSFVADMLSRLVATGLQRQRAGAISGNG-------------KKAIVRVGVISPYRGQVQRIRQDLRQRRLL-----VEGGPDHGYVNVEISTVDGFQGREVDVVLFSCVRAASAGGGGRWGTIGFLSDRRRMNVAITRARRSLIVFGNVQRLASDRTWRALVEHAASLGRLVP-------GGGENPT---GEALCARLEATAEVHPAAATGSSRGEXXXXXXXXXXXXXXXXEQDVNDAPRR-------KKKIILSQEDERSLSSG-GRQDGEANTGKKDDVQMKNQTRDSASAN-GKPGGDVRARDRDSRREARDGNRAEKTKKPSGASNSRLQRGAGEDTTGDDSTKTTASNLRREQRASVIDRDTKSDGKRRGRDTSGGGSDDVERPPKRVRDIRSDNDTSSDKKVPSGSDEGGFNLGGLLGSIKSTAAGIASGREHEFRRGLQGGMDEERKRAAKAPRLDGAKVTDLGRPREP 7738
P+RP L+P LWDRLS EFN SQLRA+WAA A+ RE Q E A ++P A LA P LLQGPPGTGKTRTVLGVVSAILAR +EK G+ G G+G TL +QKRPG A R A KTHQR+LVCAPSNGAVDEL QRLA SGGVWDQRG +APRV+R+G PSE AADRV+ V+L+F VEERVKLH KS R AE +I + ++RI EA R +R+ GE G S NRRHQ + IRRLR E+L AK+ R+D++R LE ERG++R SLV VCATLSGCGSG +V+ V+ S KGFDTV+VDEACQATE STLIPLSLGCKRLILVGDPRQLPATVISQ+AA+LNLE+SLFERLERAG+PVHMLT+QYRMHPEIRAFPS FY RLTDAPCV+ Q + S SS ++ALP PLGPCFPPFLL+DVS+G E RAG+SYQNP E+SFV+ L+RLVA+GL+ R G K +VRVGVI+PYRGQV I+Q+L ++GG + G V+ E+STVDGFQG+EVDVVLFSCVRA S+G IGFL+D+RRMNVA+TRARRSL+V GNV RL+SD TW+ALV+H+ S RL P GG GEALCARLE TA A R + +DA KK+I + S + G GR DG DD A A+ G+ D RA R G R +KPS ++ AG + + D R E+ S +R GG ++ RP KR R+D ++ K+V + +GGF LGGLL S+ S A GIASG+EH+FR+GL+GG DEER+R A APRL GA+VT+L RP EP
Sbjct: 71 PKRPSLVPAALWDRLSQEFNVSQLRAIWAAAASAREAQ---------------EDLAAAARDNDGRATPEAAVLAERRAPVNHAXXXXXXXXXXXXXXXXXXXXXLLQGPPGTGKTRTVLGVVSAILARREEKDCGSXXXXXXXGARGMGTTLAPGARQKRPGVAGRWVAAKTHQRILVCAPSNGAVDELAQRLALESGGVWDQRGNAVAPRVVRLGKPSEDAADRVKAVSLEFMVEERVKLHAKSAEARTAETKIRETHARIDEAGRAVRSGGVGEVGGVAGIGSAENRRHQLNTHIRRLRGELLVAKQRRRDALRSLEVERGKIRRSLV-------VCATLSGCGSGPMVEAVSLSGKGFDTVIVDEACQATEPSTLIPLSLGCKRLILVGDPRQLPATVISQRAARLNLEVSLFERLERAGYPVHMLTVQYRMHPEIRAFPSARFYNGRLTDAPCVRDQAAIPAQSPSSETTALP-PLGPCFPPFLLVDVSSGSERRAGSSYQNPREASFVSAFLARLVASGLRSGRGVKAGGXXXXXXXXXXGQDREKSGVVRVGVITPYRGQVHCIQQELSGXXXXXXXXRLKGGVEDGGVDAEVSTVDGFQGKEVDVVLFSCVRAPSSGXXXXX-XIGFLADQRRMNVALTRARRSLVVLGNVGRLSSDGTWKALVDHSKSRDRLEPEAVKARTSGGXXXXXXDGEALCARLEETA-----AGKKGGRDRSGDRQSTGRNRAGRGGRGEADDAVGSGVAGGSDKKEIQAPRRPAGSRTGGHGRGDGSGGINVPDDRAAAAVVVPPAVADIGEHCADRRANPRHEPESVGSGQR----RKPSSRGGDGVRPSAGLEGSVRDRPPVDKRQQRHEEAGGAKPTPRGSACRR----PDGGAAN---RPQKRA---RADGQGAA-KRVST--PDGGF-LGGLLSSLSSNAGGIASGKEHDFRQGLRGGEDEERRRVAAAPRLGGARVTELSRPVEP 1010
BLAST of mRNA_H-paniculata_contig809.16101.1 vs. uniprot
Match: D8LLI4_ECTSI (SEN1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI4_ECTSI) HSP 1 Score: 575 bits (1481), Expect = 1.200e-165 Identity = 384/836 (45.93%), Postives = 472/836 (56.46%), Query Frame = 1
Query: 1 SPVMDRWVPVLEQGLIALAPGTGSSGSSSAGYASENESLHWSGLHVALQLLEPCAAPLLAAGFPTLVDLTLQKIDEGPGIGVGVPLYLQVCGCFAALLRLLGSRLWNESSLRPREVLAALQRQCCGDDGGMRV--RSSGSSV--NEAVRKKLLEMVPLMVKSTLA---------------------GGSREKNLP-----------GEKGMADTALEFLAKELSPTLAVRVPGRDRGGGYRRM--LTSALLDVLEACYGAL---------SEATGPESWPWNSTSSRMDQENGASSGRRGDYSTSSVGIRSSQRPWWPRTWPVRTFRDWGPRLADAAGDRKGYISSPGISATVVERASELVELVLRRHAQAAWRVTLYALRGGQGQAGFAGAGSGSLQVGAID----VLPLCEPLLTRICVELPVLNFSVRVHAAVFEAHGSIALLPCGNSAVRQF-GSGGAAVS-TLYKLHTGLSNQFTKIFSPYLQRLTEEVKTRGVGVSPVLRLEVAPQMVQALLVPYPSARTTLEQLLFHSVRSNNGSGNSGTSSTASERRDLGSLLRRLPRDCARACFLAMPQALGAMAAAGPHLCIKSWGPLFHVAGVLGCSVLLPSPSSETGLSCGGGGIDEKPTRRGFAGWILPSEEGEKEREQETENQMWAVVEAIWEFAFLQVIPEALPALKAEHHVTLDEALRELFSSLESLWPLLTGKDTRTRRPDLANAFLSSRPLWLEPLHAWVSEPWLSLRARKAAAGFVQRTLLPTLADTSANAAIVLAGDGSGYR---DGTVAHTGKKILGLVGGRLGAYEEEGKEGPGRDLTEKEIEAKTLRALQSAA 2340
SPV+DRWVPVLE+GL + +SGS S+ E LHWSGLHVALQLLEP AAPLLA GFPTLVDL LQK D+GPG GV LYLQVCGC +ALLRLLG+ +W SS +P EVL AL+RQ DG R +G + NEA++KK+ EM+PL+V S A GG+ + G +AD L FL++E++ AV P +RG RR L ALL VLE CY S+ PESWPWN+ +SG W +WPVR+ WGPRLAD AGDR G S + VV+RA+ +V+LVLR H AAWR L ALR A +G+GS S G ++ V+PLC PLL RIC+ELP+++ VRVHAAVFEAHG ++LLPCG+SA+R G GG A S L LH+G+ +QF ++F PY+Q LTE VK RG ALL P+AR LE+L+ SV S+ G R DL LL R P DCARACF A+PQALGAMAAAGPHL +KSW PLF GVLGC+VLLP S+ G E+++W V+EA+WEF FLQVIPEALPAL+ +H L+EA R LF SLESLWPLLTG + RRP L + F SR LWL+PL +WVS WL AR+AAA FVQR+LLP L +S +A GD G R D +V + +K + LVG +L A E EG+ L+ +E EA L AL+SAA
Sbjct: 349 SPVIDRWVPVLERGLSSGGAHPTASGSDPD---SDGERLHWSGLHVALQLLEPSAAPLLAYGFPTLVDLALQKFDDGPGPR-GVSLYLQVCGCLSALLRLLGAEMWEYSSRQPSEVLEALERQTSYGDGADTADFRGTGRRMLPNEAIQKKVFEMLPLLVSSAAAVDRPSGATGWGTAVYGNQGIGGGTDHPGVAARHIDDAAAAAGVLPVADAVLSFLSREIASLSAV-APENNRGAHGRRQMALAKALLGVLETCYNGSAGGGESDDDSDLLEPESWPWNAXXXXXXXXXXXTSGA-----------------WCYPSWPVRSVPSWGPRLADIAGDRSGRASGESTAVAVVDRAARVVQLVLREHGGAAWRAALSALRLPP-SASSSGSGSASQSSGRMEDEECVVPLCGPLLERICLELPLMDLPVRVHAAVFEAHGWLSLLPCGHSAIRAAEGRGGPAASRVLAALHSGMMSQFVRLFVPYVQGLTEIVKNRG-----------------ALLAAVPTARAALEELVSRSVFSDGG-----------RRGDLRPLLGRFPPDCARACFQAVPQALGAMAAAGPHLSLKSWSPLFQAVGVLGCAVLLPKASAADGXXXXXXXXXXXXXX---------------------EDELWEVLEAVWEFIFLQVIPEALPALREQHATRLEEAFRALFGSLESLWPLLTGPAAQRRRPRLTDGFYRSRSLWLQPLLSWVSAAWLPRVAREAAAIFVQRSLLPFLHASSCGSAAG-GGDERGARGDDDPSVGVSPRKTVRLVGDKLRAVEGEGRSAWA--LSSEEPEADLLAALKSAA 1109
BLAST of mRNA_H-paniculata_contig809.16101.1 vs. uniprot
Match: A0A6H5J5S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5S7_9PHAE) HSP 1 Score: 356 bits (913), Expect = 5.270e-98 Identity = 284/748 (37.97%), Postives = 363/748 (48.53%), Query Frame = 1
Query: 313 LWNESSLRPREVLAALQRQCCGDDGGMRV--RSSGSSV--NEAVRKKLLEMVPLMVKSTLA-----GGSR-------------EKNLPGEKG--------------MADTALEFLAKELSPTLAVRVPGRDRGGGYRRM-LTSALLDVLEACY------GAL-----SEATGPESWPWNSTSSRMDQENGASSGRRGDYSTSSVGIRSSQRPWWPRTWPVRTF-----RDWGPRLADAAGDRKGYISSPGISATVVERASELVELVLRRHAQAAWRVTLYALR----GGQGQAGFAGAGSGSLQVGAIDVLPLCEPLLTRICVELPVLNFSVRVHAAVFEAHGSIALLPCGNSAVRQF-GSGGAAVS-TLYKLHTGLSNQFTKIFSPYLQRLTEEVKTRGVGVSPVLRLEVAPQMVQALLVPYPSARTTLEQLLFHSVRSNNGSGNSGTSSTASERRDLGSLLRRLPRDCARACFLAMPQALGAMAAAGPHLCIKSWGPLFHVAGVLGCSVLLPSPSSETGLSCGGGGIDEKPTRRGFAGWILPSEEGEKEREQETENQMWAVVEAIWEFAFLQVIPEALPALKAEHHVTLDEALRELFSSLESLWPLLTGKDTRTRRPDLANAFLSSRPLWLEPLHAWVSEPWLSLRARKAAAGFVQRTLLPTLADTSANAAIVLAGD--GSGYRDGTVAHTGKKILGLVGGRLGAYEEEGKEGPGRDLTEKEIEAKTLRALQSAANMLCNDADQVD 2373
+W SS +P EVL AL+RQ DG R +G + NEA++KK+ EM+PL+V S A GG+ E + PG +AD AL FL++E++ AV R G R++ L A+L VLE CY GA S+ GPESWPWN+ + S W+ +WPVR+ + + VV+RA+ +V+LVLR HA AAWRV L ALR A SG ++ V+PLC PLL RIC+ELP+++ VRVHAAVFE HG ++LLPCG+SA+R G GG A S L LH+G +QF K+F PY+Q LTE VK RG VAP ++QALL P+AR LE+L+ SV S+ G R DL LL R P DCARACF A+PQALGAMAAAGPH +KSW PLF GVLGC+VLLP S+ G W E ++W V+EA+WEF FLQV LWPLLTG + RRP LA+ F SR LWL+PL +WVS WL AR+AAA FVQR+LLP L +S ++A D G D +V + +K + LVG +L A E +G + E EA L L+SAA + VD
Sbjct: 1 MWEYSSRQPSEVLEALERQTSYGDGADTADFRGTGRRMPPNEAIQKKVFEMLPLLVSSASAVDRPSGGTGVGTAVYGNQEVGGEADHPGAAARRVDDAAAAASVLPVADAALSFLSREIASLSAVAPEARRGAHGRRKLALAKAVLGVLENCYDGSAGGGASDDDYDSDVLGPESWPWNAAAXXXXXXXXXSGA------------------WYHPSWPVRSLPXXXXXXXXXXXXXXXXXXXXXXXNGSTAVAVVDRAARVVQLVLREHAGAAWRVALSALRPLPSASSXXXXXASQSSGRMEDDEC-VVPLCGPLLERICLELPLMDLPVRVHAAVFEVHGWLSLLPCGDSAIRAAEGRGGPAASRVLAALHSGTMSQFVKLFVPYVQGLTEIVKNRG----------VAPSILQALLATIPAARAALEELVSRSVFSDGG-----------RRGDLRLLLGRFPPDCARACFQAVPQALGAMAAAGPHFSLKSWSPLFQAVGVLGCAVLLPEASA--GDXXXXXXXXXXXXXXXXXXW--------------EECELWEVLEAVWEFIFLQV---------------------------GYLWPLLTGPVAQRRRPRLADGFYRSRSLWLQPLLSWVSAAWLPRVAREAAAIFVQRSLLPFLHASSCSSAANGGDDRGACGDDDPSVGVSPRKTIRLVGDKLCAVEGDGGSAWALSSGDPE-EADLLAVLKSAAAAATTEGTAVD 664
BLAST of mRNA_H-paniculata_contig809.16101.1 vs. uniprot
Match: W7TPV4_9STRA (Helicase sen1 n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPV4_9STRA) HSP 1 Score: 326 bits (835), Expect = 2.580e-85 Identity = 221/574 (38.50%), Postives = 313/574 (54.53%), Query Frame = 2
Query: 5219 VVLLQGPPGTGKTRTVLGVVSAILARDKEKAPGTGAAGTGDGRNGLGMTLEVRPKQKRPGGAARLAAPKTHQR---VLVCAPSNGAVDELTQRLADPSGGVWDQRGKPIAPRVIRVGTPSEGAADRVRPVTLDFQVEERV--KLHPKSIALRDAE-MRINKAYSRIGEAERDMRAAN--------GEGTASDGNRRHQFMSEIRRLRNEILKAKRVRQDSIRGLEAERGRLRHSLVGNAQASVVCATLSGCGSGNLVDVVASSRKGFDTVVVDEACQATELSTLIPLSLGCKRLILVGDPRQLPATVISQKAAKLNLEISLFERLERAGHPVHMLTIQYRMHPEIRAFPSQSFYEDRLTDAPCVKQMEVGDTSASSSSSALPLPLGPCFPPFLLIDVSTGQENRAGNSYQNPTESSFVADMLSRLVATGLQRQRAGAISGNGKKAIVRVGVISPYRGQVQRIRQDLRQRRLLVEGGPDHGYVNVEISTVDGFQGREVDVVLFSCVRAASAGGGGRWGTIGFLSDRRRMNVAITRARRSLIVFGNVQRLASDRTWRALVEHAASLGRLVPGGGEN 6898
V LLQGPPGTGKTR ++G++SAI+ + T VRP A R+ + HQR +LVCAPSNGA+DE+T RL G+ + G+ P ++R+G A + V+ V+L+ Q+E + K DAE +R+ + E D R EG + + R R+E+ +AKR R + ++ LEAE+ R+R++L+ +A+ ++ +TLS S L + V S+ +GF TVV+DEA QA E STLIPL GC+ LILVGDPRQLPATV+S K + SLFERLE+ GHPVH+L +QYRM P I FPSQ+FY ++L++AP ++ E +P F + + +VS+ +E + GN+ N E+ F +++RL + A + VI+PYR QV+ + + LR R + G E+ST+DGFQGRE +V++FSCVRA GG TIGFL+D RRMNV +TRARRSL V + L +DR+WRA +E A LV GG +
Sbjct: 1973 VTLLQGPPGTGKTRCIMGLLSAIMHSRPTSTYYPSHSAT-----------NVRP-------ALRVGY-RHHQREARILVCAPSNGAIDEITMRLQRT--GLLNAEGQVFKPTLVRLGVVDPDAEEEVKTVSLESQLERALLTNFQKKEYDKADAEVLRLQRDERDAREIALDARKCRLDHGLHGRNEGEVEESEWLRKAEQRQRISRSELYRAKRRRWECLKALEAEKSRIRNNLIRDAK--IILSTLSTAASSQLAEAVTSTSRGFGTVVIDEAGQAVEPSTLIPLRYGCRNLILVGDPRQLPATVMSPVLQKYKYDRSLFERLEKGGHPVHLLRVQYRMRPPICRFPSQAFYHNKLSNAPALEAAEEDADGDLKRYDRVPY-----FGAYRVFNVSSAREIKRGNAISNIEEAIFAVQLIARL-----------RVEFPDLVAFKHMAVITPYRAQVRLVEEHLRVRF------GEEGSSLAEVSTIDGFQGREKEVIIFSCVRANPQGG-----TIGFLADERRMNVGLTRARRSLFVLCHRASLWTDRSWRAFIEDAEERQSLVDTGGRD 2496
BLAST of mRNA_H-paniculata_contig809.16101.1 vs. uniprot
Match: A0A6H5J6B2_9PHAE (AAA_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6B2_9PHAE) HSP 1 Score: 287 bits (735), Expect = 4.360e-80 Identity = 250/643 (38.88%), Postives = 308/643 (47.90%), Query Frame = 2
Query: 4118 ILQATSEPRFKPLPQPPRLQHQPARPAKPPTL-----GPPYPVDEASFIDACKRLIAVEALCKAGNVGDKAAAKPSRFAHSGDRRAPGYQSAASIDLLLQSLQSLASFRVTASLLNSSGRSAAKHLKQIAAKPDSSLDGIGLASPYWGPEVRSAAGRLLRCWRFVANESADDNMMSITDTINSPVVAKDPSKSRPETAGGSAS------------KEKDGKSTVN---RNLGAGKGNEKGDKEEGAAETDRGDN-SKPNRNSKKPRRDSSGAPEMAKPCTSPTLPP----------PERPRLIPLLLWDRLSLEFNPSQLRAVWAAVATVRETQLEREREQERVRRWELEKNAVLTSSKVADSSP-SAQLASSNDPTGDGGGGPGDGSGGTRGALGEGGVV--------------LLQGPPGTGKTRTVLGVVSAILARDKEKAPGTGAAGTGDGRNGLGMTLEVRPKQKRPGGAARLAAPKTHQRVLVCAPSNGAVDELTQRLADPSGGVWDQRGKPIAPRVIRVGTPSEGAADRVRPVTLDFQVEERVKLHPKSIALRDAEMRINKAYSRIGEAERDMRAAN-GE--GTASDGNRRHQFMSEIRRLRNEILKAKRVRQDSIRGLEAERGRLRHSLVGNAQA 5899
+ QATSEP +PLP+ Q P L PPY VDEASF DACKRL +VE G G + + + D P + L++SL LASFRV LL S GR AK LK+++ S WGP+VR+AA RLLR WR V + S T +S+ E GG+ S K K G + R + K G+KE+ S S P D+ + P T PP P+RP L+P LWDRLS EFN SQLRA+WAA A+ RE E A ++P +A LA P A LLQGPPGTGKTRTVLGVVSAILAR +EK +G +G G+G TL +QKRPG A R A KTHQRVLVCAPSNGAVDEL QRLA SGGVWDQRG APRV+R+G PSE AADRV+ V+L+F VEERVKLH KS R+AE +I + ++RI EA R +R+ + GE G A G+ + +D++R L+ ERG++R SLV NAQA
Sbjct: 2 VAQATSEPSLQPLPE--TAQRAPGNSTTSNNLWATKLAPPYLVDEASFTDACKRLSSVEDSALLGKSGAGGGSPATAAGLAADIAGPE-------ESLMRSLGCLASFRVAPELLTSHGRGTAKRLKRLSK------------SEVWGPDVRNAAARLLRAWRGVVDVGGGATAYSKAAT----------KRSQDEERGGAGSGXXXXXXXXGGAKAKVGAEQIVDRVRPAASTKPRLVGEKEQXXXXXXXXXGISSSGHKSPAPMPDAGSSSSDFSPKV--TCPPEKQQKEQQQTPKRPSLVPAALWDRLSQEFNVSQLRAIWAAAASAREAH---------------EDLAAAARGNDGPATPETAVLAERRAPV-------------NHAAXXXXXXXXXXXXXXXXXXXXXLLQGPPGTGKTRTVLGVVSAILARREEKDCASGGGRSGASARGMGTTLAPEARQKRPGVAGRWVAAKTHQRVLVCAPSNGAVDELAQRLALESGGVWDQRGNATAPRVVRLGKPSEDAADRVKAVSLEFMVEERVKLHAKSAEARNAETKIRETHARIDEAGRAVRSGDVGEVGGMAGIGSAEN--------------------RDALRSLDVERGKIRRSLVSNAQA 563
BLAST of mRNA_H-paniculata_contig809.16101.1 vs. uniprot
Match: A0A2G5BIP1_COERN (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BIP1_COERN) HSP 1 Score: 271 bits (694), Expect = 1.820e-75 Identity = 200/582 (34.36%), Postives = 292/582 (50.17%), Query Frame = 2
Query: 5210 EGGVVLLQGPPGTGKTRTVLGVVSAILARDKEKAPGTGAAGTGDGRNGLGMTLEVRPKQKRPGGAARLAAPKTHQRVLVCAPSNGAVDELTQRLADPSGGVWDQRGKPIAPRVIRVGTPSEGAADRVRPVTLDFQVEERVKLHP---------KSIAL---RDAEMRINKAYSRIGEAERDMRAANGEGTASDGNRRHQFMSEIRRLRNEILKAKRVRQDSIRGLEAERGRLRHSLVGNA------------QASVVCATLSGCGSGNLVDVVASSRKGFDTVVVDEACQATELSTLIPLSLGCKRLILVGDPRQLPATVISQKAAKLNLEISLFERLER-AGHPVHMLTIQYRMHPEIRAFPSQSFYEDRLTDAPCVKQMEVGDTSASSSSSALPLPLGPCFPPFLLIDVSTGQENRAG-NSYQNPTESSFVADMLSRLVATGLQRQRAGAISGNGKKAIVRVGVISPYRGQVQRIRQDLRQRRLLVEGGPDHGYVNVEISTVDGFQGREVDVVLFSCVRAASAGGGGRWGTIGFLSDRRRMNVAITRARRSLIVFGNVQRLASDRTWRALVEHAASLGRL 6877
E G L+QGPPGTGKT+T+LG+ A+L++DK+ AAR A + ++L+CAPSN AVDE+ +RL G+ D RG PRV+RVG S+ + VR TLDF +E+ + + + AL R ++++ I E + M+ + TA+ +R +R + K+ +Q + LE ER R R + ++C TLSG G D++ S + FDTV++DEA Q+ ELS LIPL C R +LVGDP QLP TV SQ A K SLF R+++ A V +L+IQYRMHPEI A PS+ FY RL D P ++ P +PPF+ +++ +G+E + +S N E ++ L Q +S R+GVI+PY+ Q++++ + R+ GP +E +TVDGFQG+E D+++FSCVRA AG +GFL+DRRRMNV +TRAR+SL V GN + L W++L++ A + G L
Sbjct: 4 EHGFTLIQGPPGTGKTKTILGLTGALLSQDKD--------------------------------AARTA----NNKLLICAPSNAAVDEIVKRL---KSGIRDSRGVTFKPRVVRVGQ-SDHISSTVRDTTLDFLMEQALNANTTQALGAKETRKSALGQQRTLRAQLDEINVEIRELDSQMQRTDPSSTAA-----------LREMREKFHSVKQRKQRVCQQLEQERARAREASKAXXXXXXXXRMQILQSTDILCCTLSGSGH----DMLTSLKCAFDTVIIDEAAQSIELSCLIPLKYECNRCVLVGDPLQLPPTVFSQSATKHGYNKSLFVRVQQNAPESVSLLSIQYRMHPEISALPSRLFYNSRLKDGP-----------EMAAKQCAPWHRNERYPPFVFLNIQSGREQKGALHSVFNMQEVEAAVQLVFGLC------QDYPKLSWKQ-----RIGVITPYKQQLRKLVEAFRKHF-----GPSATDA-IECNTVDGFQGQEKDIIIFSCVRAGEAG-------VGFLADRRRMNVGLTRARKSLFVLGNAKMLGGSPLWKSLIDDANTRGLL 495
BLAST of mRNA_H-paniculata_contig809.16101.1 vs. uniprot
Match: A0A1E3PY24_LIPST (Uncharacterized protein n=1 Tax=Lipomyces starkeyi NRRL Y-11557 TaxID=675824 RepID=A0A1E3PY24_LIPST) HSP 1 Score: 284 bits (727), Expect = 6.660e-73 Identity = 209/577 (36.22%), Postives = 308/577 (53.38%), Query Frame = 2
Query: 5216 GVVLLQGPPGTGKTRTVLGVVSAILARDKEKAPGTGAAGTGDGRNGLGMTLEVRPKQKRPGGAARLAAPKTHQRVLVCAPSNGAVDELTQRLADPSGGVWDQRGKPIAPRVIRVGTPSEGAADRVRPVTLDFQVEERVKL---------HPKS---IALRDAEMRINKAYSRIGEAERDMRAANGEGTASDGNRRHQFMSEIRRLR-NEILKAKRVRQDSI-RGLEAERGRLRHSLVGNAQASVVCATLSGCGSGNLVDVVASSRKGFDTVVVDEACQATELSTLIPLSLGCKRLILVGDPRQLPATVISQKAAKLNLEISLFERLERA-GHPVHMLTIQYRMHPEIRAFPSQSFYEDRLTDAPCVKQMEVGDTSASSSSSALPLPLGPCFPPFLLIDV-STGQENRAGNSYQNPTESSFVADMLSRLVATGLQRQRAGAISGNGKKAIVRVGVISPYRGQVQRIRQDLRQRRLLVEGGPDHGYVNVEISTVDGFQGREVDVVLFSCVRAASAGG-GGRWGTIGFLSDRRRMNVAITRARRSLIVFGNVQRLASDRTWRALVEHAASLGRLVPGGGE 6895
G L+QGPPGTGKT+T+LG++ A L K + G+ +++ P Q++ G + + +R+LVCAPSN AVDEL RL GG+W+ G+ PR++R+G +D + P D +EE V + KS I + ++NK + E +R++ A + TA D R + M ++ + L +R R + R E ER ++ ++ NA+ V+CATLSG G D++AS F+TV++DEA Q ELS LIPL GC + +VGDP QLP TV+SQ A+K E SLF R++R VH+L+IQYRMHP+I FPS FY+ RL D ++ T A S+A F P+ +V S Q++++ +SY N E+ L A L RQ + + RVG+++PY+ Q+ +R R + G ++ +T+DGFQG+E D+++ SCVRA +AGG GG +GFL+D RRMNVA+TRA+ SL + GN+Q L + WR L+E A G + GE
Sbjct: 1447 GFTLIQGPPGTGKTKTILGIIGATLTTTKSR----------------GIPIQI-PGQRQ-SGQQQASVTVEPKRILVCAPSNAAVDELVLRL---KGGIWNSSGEIFFPRIVRLGR-----SDIINPAVRDLTLEELVDAQVGKFEQENNAKSGGGIDRGNLREQLNKVLAERAEVDREI-AMTEDATARDKLRAQRDMLNAKKAALGQRLDEERDRHAVVVRTNEIERRNIQTRILTNAE--VMCATLSGAGH----DLLASLSMTFETVIIDEAAQCVELSALIPLKYGCIQCAMVGDPNQLPPTVLSQTASKFQYEQSLFVRMQRNFPSSVHLLSIQYRMHPQISQFPSAQFYDSRLIDGDGMEAR----TEAEWHSAA------DIFGPYRFFNVHSREQQSKSTHSYYNKMEA---------LCAVALYRQLTESFPKLDLEG--RVGIVTPYKQQLHELRNTFRSAL------GNTGMHGIDFNTIDGFQGQEKDIIILSCVRAQAAGGAGGSVKGVGFLADIRRMNVALTRAKSSLWIIGNMQSLVVNDVWRKLIEDAQKRGLVSQFDGE 1963
BLAST of mRNA_H-paniculata_contig809.16101.1 vs. uniprot
Match: A0A2P6NY49_9EUKA (Helicase sen1 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NY49_9EUKA) HSP 1 Score: 282 bits (722), Expect = 2.260e-72 Identity = 212/573 (37.00%), Postives = 297/573 (51.83%), Query Frame = 2
Query: 5216 GVVLLQGPPGTGKTRTVLGVVSAILARDKEKAPGTGAAGTGDGRNGLGMTLEVRPKQKRPGGAARLAAPKTHQRVLVCAPSNGAVDELTQRLADPSGGVWDQRGKPIAPRVIRVGTPSEGAADRVRPVTLDFQVEERVKLHPKSIALRDAEMRINKAYSRIGEAERDMRAANGE----GTASD-----GNRRHQFMSEIRRLRNEILKAKRVRQDSIRGLEAER----------GRLRHSLVGNAQASVVCATLSGCGSGNLVDVVASSRKGFDTVVVDEACQATELSTLIPLSLGCKRLILVGDPRQLPATVISQKAAKLNLEISLFERLERAGHPVHMLTIQYRMHPEIRAFPSQSFYEDRLTDAPCVKQMEVGDTSASSSSSALPLPLGPCFPPFLLIDVSTGQENRAGNSYQNPTESSFVADMLSRLVATGLQRQRAGAISGNGKKAIVRVGVISPYRGQVQRIRQDLRQRRLLVEGGPDHGYVNVEISTVDGFQGREVDVVLFSCVRAASAGGGGRWGTIGFLSDRRRMNVAITRARRSLIVFGNVQRLASDRTWRALVEHAASLGRL 6877
G VLLQGPPGTGKT+T+ G++S +L+ E G P +R + +LVCAPSN AVDE+ RL G+ + G+ P +IR+G+ D VR ++LD + EE + I + E + + ++ + + D+ GE A D G + +++RLR E+ +++RV D L+A+ R L+ N+ A+++ +TLSG GS D ++ GFDTVVVDEA Q E+STLIPL GCK +LVGDP QLPATVIS+ A + + E SLF+R++ AG V++LT QYRMHPE+R FPS+ FY DRL D VK + ALP P+ ++ T E+ G S+ N E+ F++ + L + + G G ++GVI+PY+ QVQ +++ R PD VE TVDGFQGRE DVVLFSCVRA+ + G IGFLSD RRMNVAITR + L + GN++ L + W L+E A GRL
Sbjct: 1086 GFVLLQGPPGTGKTKTICGLISVLLSNAPENLVKLG-----------------HPNSQR-----------SQNHILVCAPSNAAVDEIALRLLRE--GLVGKEGRRFHPNIIRLGSVDTMHPD-VRSISLDQKREEATRDQGGQIYKQKRE--FDNSREKLSQLKADVAKLTGEINLLNNAVDKMRIEGGNAEEIAVKLQRLR-ELNQSRRVLNDKFAPLDAQHKEEAKLYDNVSRESFKLILNS-ATIILSTLSGAGS----DKMSLLDFGFDTVVVDEAAQTVEVSTLIPLKYGCKTCVLVGDPAQLPATVISRSAKEFSYEQSLFQRMQMAGVHVNVLTTQYRMHPELRLFPSREFYLDRLIDGNNVKNYP-------NHIQALP--------PYSFFNL-TSSESSQGKSFINKEEAQFISQLFEYL-----DKDKTGRFDG-------KIGVITPYKQQVQELKRAFR---------PDRAE-RVEFGTVDGFQGREKDVVLFSCVRASDSQRG-----IGFLSDVRRMNVAITRPKMGLYIVGNIRSLRVNPFWNDLIEDALGRGRL 1576
BLAST of mRNA_H-paniculata_contig809.16101.1 vs. uniprot
Match: L8H8R0_ACACA (DNAbinding protein SMUBP-2, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H8R0_ACACA) HSP 1 Score: 270 bits (691), Expect = 4.950e-72 Identity = 206/565 (36.46%), Postives = 279/565 (49.38%), Query Frame = 2
Query: 5222 VLLQGPPGTGKTRTVLGVVSAILARDKEKAPGTGAAGTGDGRNGLGMTLEVRPKQKRPGGAARLAAPKTHQRVLVCAPSNGAVDELTQRLADPSGGVWDQRGKPIAPRVIRVGTPSEGAADRVRPVTLDFQVEERVKLHPKSIALRDAEMRINKAYSRIGEAERDMRAANGEGTASDG------NRRHQFM--SEIRRLRNEILKAKR---------VRQDSIRGLEAERGRLRHSLVGNAQASVVCATLSGCGSGNLVDVVASSRKGFDTVVVDEACQATELSTLIPLSLGCKRLILVGDPRQLPATVISQKAAKLNLEISLFERLERAGHPVHMLTIQYRMHPEIRAFPSQSFYEDRLTDAPCVKQMEVGDTSASSSSSALPLPLGPCFPPFLLIDVSTGQENRA--GNSYQNPTESSFVADMLSRLVATGLQRQRAGAISGNGKKAIVRVGVISPYRGQVQRIRQDLRQRRLLVEGGPDHGYVNVEISTVDGFQGREVDVVLFSCVRAASAGGGGRWGTIGFLSDRRRMNVAITRARRSLIVFGNVQRLASDRTWRALVEHA 6859
VLLQGPPGTGKT+T+LG++S+ L + L + P KR VLVCAPSN AVDE+ RL + G++++ + I + + + +D+ V QVE K+ A R ++ K S + D+R E AS G + + +F SE+RR E+ K + R + L + +V TLSG GS D+++ GF+TVV+DEA QA E++TLIPL C+R ILVGDP QLPATVISQ A+ SLF+RL++AGHPV ML +QYRMHP IR FPS+ FY++RLTD P + DTS S + P P F PFL D+ G E + G SY NP E++F + L + + + GVI+PY+ Q + +R Y ++I+T+DGFQGRE DV++FSCVRA G IGFLSD RRMNVA+TRA+ L V G L ++ W ALV HA
Sbjct: 294 VLLQGPPGTGKTKTILGILSSSLIMSR-----------------LSQATQTDPNNKR-------------NPVLVCAPSNAAVDEICMRLLED--GLFNESSVHPMVKAITLASLLDAESDKGNSVLKKEQVEFE-GFRTKTDATRKELEQVLKKISALQTELTDLRKRREESLASSGGLGLTPDEKAEFAKESELRRELTELHNGKAKLGXXXXXXXXXXXXXXXXXXKLRKQMELQILNETDIVLTTLSGSGS----DILSHMSHGFETVVIDEAAQAVEMATLIPLKYDCRRCILVGDPNQLPATVISQAASSFLYAQSLFQRLQKAGHPVIMLDVQYRMHPLIREFPSKHFYDNRLTDGPNI------DTSQSGLYNQ-PYHADPSFQPFLFYDLCKGVEEQGARGQSYVNPAEATFCLQLFQDLCS---------------RFPHIESGVITPYKQQYFLL------QRTFAAALDKATYSAIDINTIDGFQGREKDVIIFSCVRAHETKG------IGFLSDIRRMNVALTRAKFGLFVVGKSTALLNNPHWGALVNHA 787
BLAST of mRNA_H-paniculata_contig809.16101.1 vs. uniprot
Match: B6K5E8_SCHJY (Helicase sen1 n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6K5E8_SCHJY) HSP 1 Score: 280 bits (717), Expect = 9.890e-72 Identity = 200/564 (35.46%), Postives = 298/564 (52.84%), Query Frame = 2
Query: 5216 GVVLLQGPPGTGKTRTVLGVVSAILARDKEKAPGTGAAGTGDGRNGLGMTLEVRPKQKRPGGAARLAAPKTHQRVLVCAPSNGAVDELTQRLADPSGGVWDQRGKPIAPRVIRVGTPSEGAADRVRPVTLDFQVEERVK-LHPKSIALRDAEMRINKAYSRIGEAERDMRAANGEGTASDG-------NRRHQFMSEIRRLRNEILKAKRVRQDSIRGLEAERGRLRHSLVGNAQASVVCATLSGCGSGNLVDVVASSRKGFDTVVVDEACQATELSTLIPLSLGCKRLILVGDPRQLPATVISQKAAKLNLEISLFERLERAG-HPVHMLTIQYRMHPEIRAFPSQSFYEDRLTDAPCVKQMEVGDTSASSSSSALPLPLGPCFPPFLLIDVSTGQENRAGNSYQNPTESSFVADMLSRLVATGLQRQRAGAISGNGKKAIVRVGVISPYRGQVQRIRQDLRQRRLLVEGGPDHGYVNVEISTVDGFQGREVDVVLFSCVRAASAGGGGRWGTIGFLSDRRRMNVAITRARRSLIVFGNVQRLASDRTWRALVEHAASLGRLV 6880
G L+QGPPGTGKT+T+LG+VSA+L + G G G+NG +P K+ VL+CAPSN A+DE+ RL D G++D G P+++RVG SE V+ TLD +++E+++ L+ K M++ K + I + ERD A E + G + + M +L + +R + + R ++ + +++ L+ +A+ ++C+TLS G D++ S F +V++DEA QA ELS LIPL GC+R I+VGDP QLP TV+S+ A++ SL+ R+ + + +L+IQYRMHPEI FPS FY RL D P ++++ +A P P F + DV T + + S NP E+SFV + +LV + G +VG+++PYR Q+Q +R +R GP + V+ +TVDGFQG+E D++LFSCVR GG IGFLSD RR+NVA+TRA+ SL + GNV L D+ W AL+ A + LV
Sbjct: 1289 GFTLVQGPPGTGKTKTILGIVSALLT-----SGGQGRRFDAPGQNG-----NTQPGTKK---------------VLICAPSNAAIDEILLRLKD---GIFDHEGIKFKPKILRVGY-SESINPHVKEFTLDEKMQEQMQVLNLKKNQDNGESMQVRKRHDEILK-ERDALRAQLEKARNSGINDPAVEMKLREVMKTKNQLEQRLDDMRRQQGIANRNMDIAKKQIQSQLLKDAE--IICSTLSASGH----DILLKSGISFPSVIIDEAAQAVELSALIPLKYGCERCIMVGDPNQLPPTVLSKTASQNGYSESLYVRMHKQNPNSSFLLSIQYRMHPEISRFPSSYFYGSRLLDGPDMQKL-----------TARPWHHDPTFGIYRFFDVRTRESSSITKSVYNPEEASFVLTLYDKLVQDYINVDMEG-----------KVGIVTPYRRQLQELRMQFERRY-----GPLI-FKRVDFNTVDGFQGQEKDIILFSCVRGDMGGG------IGFLSDTRRLNVALTRAKSSLYIIGNVGTLTKDKMWSALITDAQTRSCLV 1782 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig809.16101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig809.16101.1 >prot_H-paniculata_contig809.16101.1 ID=prot_H-paniculata_contig809.16101.1|Name=mRNA_H-paniculata_contig809.16101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1895bp MQRKERPSAGDQQAASCAADSTTAAVASATDAAFAAAAVATAHRNGVVTAback to top mRNA from alignment at H-paniculata_contig809:2430..30016+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig809.16101.1 ID=mRNA_H-paniculata_contig809.16101.1|Name=mRNA_H-paniculata_contig809.16101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=27587bp|location=Sequence derived from alignment at H-paniculata_contig809:2430..30016+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig809:2430..30016+ >mRNA_H-paniculata_contig809.16101.1 ID=mRNA_H-paniculata_contig809.16101.1|Name=mRNA_H-paniculata_contig809.16101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=11370bp|location=Sequence derived from alignment at H-paniculata_contig809:2430..30016+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |