mRNA_H-paniculata_contig809.16100.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig809.16100.1 vs. uniprot
Match: D8LLI4_ECTSI (SEN1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI4_ECTSI) HSP 1 Score: 575 bits (1481), Expect = 1.520e-175 Identity = 384/836 (45.93%), Postives = 472/836 (56.46%), Query Frame = 1
Query: 1 SPVMDRWVPVLEQGLIALAPGTGSSGSSSAGYASENESLHWSGLHVALQLLEPCAAPLLAAGFPTLVDLTLQKIDEGPGIGVGVPLYLQVCGCFAALLRLLGSRLWNESSLRPREVLAALQRQCCGDDGGMRV--RSSGSSV--NEAVRKKLLEMVPLMVKSTLA---------------------GGSREKNLP-----------GEKGMADTALEFLAKELSPTLAVRVPGRDRGGGYRRM--LTSALLDVLEACYGAL---------SEATGPESWPWNSTSSRMDQENGASSGRRGDYSTSSVGIRSSQRPWWPRTWPVRTFRDWGPRLADAAGDRKGYISSPGISATVVERASELVELVLRRHAQAAWRVTLYALRGGQGQAGFAGAGSGSLQVGAID----VLPLCEPLLTRICVELPVLNFSVRVHAAVFEAHGSIALLPCGNSAVRQF-GSGGAAVS-TLYKLHTGLSNQFTKIFSPYLQRLTEEVKTRGVGVSPVLRLEVAPQMVQALLVPYPSARTTLEQLLFHSVRSNNGSGNSGTSSTASERRDLGSLLRRLPRDCARACFLAMPQALGAMAAAGPHLCIKSWGPLFHVAGVLGCSVLLPSPSSETGLSCGGGGIDEKPTRRGFAGWILPSEEGEKEREQETENQMWAVVEAIWEFAFLQVIPEALPALKAEHHVTLDEALRELFSSLESLWPLLTGKDTRTRRPDLANAFLSSRPLWLEPLHAWVSEPWLSLRARKAAAGFVQRTLLPTLADTSANAAIVLAGDGSGYR---DGTVAHTGKKILGLVGGRLGAYEEEGKEGPGRDLTEKEIEAKTLRALQSAA 2340
SPV+DRWVPVLE+GL + +SGS S+ E LHWSGLHVALQLLEP AAPLLA GFPTLVDL LQK D+GPG GV LYLQVCGC +ALLRLLG+ +W SS +P EVL AL+RQ DG R +G + NEA++KK+ EM+PL+V S A GG+ + G +AD L FL++E++ AV P +RG RR L ALL VLE CY S+ PESWPWN+ +SG W +WPVR+ WGPRLAD AGDR G S + VV+RA+ +V+LVLR H AAWR L ALR A +G+GS S G ++ V+PLC PLL RIC+ELP+++ VRVHAAVFEAHG ++LLPCG+SA+R G GG A S L LH+G+ +QF ++F PY+Q LTE VK RG ALL P+AR LE+L+ SV S+ G R DL LL R P DCARACF A+PQALGAMAAAGPHL +KSW PLF GVLGC+VLLP S+ G E+++W V+EA+WEF FLQVIPEALPAL+ +H L+EA R LF SLESLWPLLTG + RRP L + F SR LWL+PL +WVS WL AR+AAA FVQR+LLP L +S +A GD G R D +V + +K + LVG +L A E EG+ L+ +E EA L AL+SAA
Sbjct: 349 SPVIDRWVPVLERGLSSGGAHPTASGSDPD---SDGERLHWSGLHVALQLLEPSAAPLLAYGFPTLVDLALQKFDDGPGPR-GVSLYLQVCGCLSALLRLLGAEMWEYSSRQPSEVLEALERQTSYGDGADTADFRGTGRRMLPNEAIQKKVFEMLPLLVSSAAAVDRPSGATGWGTAVYGNQGIGGGTDHPGVAARHIDDAAAAAGVLPVADAVLSFLSREIASLSAV-APENNRGAHGRRQMALAKALLGVLETCYNGSAGGGESDDDSDLLEPESWPWNAXXXXXXXXXXXTSGA-----------------WCYPSWPVRSVPSWGPRLADIAGDRSGRASGESTAVAVVDRAARVVQLVLREHGGAAWRAALSALRLPP-SASSSGSGSASQSSGRMEDEECVVPLCGPLLERICLELPLMDLPVRVHAAVFEAHGWLSLLPCGHSAIRAAEGRGGPAASRVLAALHSGMMSQFVRLFVPYVQGLTEIVKNRG-----------------ALLAAVPTARAALEELVSRSVFSDGG-----------RRGDLRPLLGRFPPDCARACFQAVPQALGAMAAAGPHLSLKSWSPLFQAVGVLGCAVLLPKASAADGXXXXXXXXXXXXXX---------------------EDELWEVLEAVWEFIFLQVIPEALPALREQHATRLEEAFRALFGSLESLWPLLTGPAAQRRRPRLTDGFYRSRSLWLQPLLSWVSAAWLPRVAREAAAIFVQRSLLPFLHASSCGSAAG-GGDERGARGDDDPSVGVSPRKTVRLVGDKLRAVEGEGRSAWA--LSSEEPEADLLAALKSAA 1109
BLAST of mRNA_H-paniculata_contig809.16100.1 vs. uniprot
Match: A0A6H5J5S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5S7_9PHAE) HSP 1 Score: 356 bits (913), Expect = 1.120e-100 Identity = 284/748 (37.97%), Postives = 363/748 (48.53%), Query Frame = 1
Query: 313 LWNESSLRPREVLAALQRQCCGDDGGMRV--RSSGSSV--NEAVRKKLLEMVPLMVKSTLA-----GGSR-------------EKNLPGEKG--------------MADTALEFLAKELSPTLAVRVPGRDRGGGYRRM-LTSALLDVLEACY------GAL-----SEATGPESWPWNSTSSRMDQENGASSGRRGDYSTSSVGIRSSQRPWWPRTWPVRTF-----RDWGPRLADAAGDRKGYISSPGISATVVERASELVELVLRRHAQAAWRVTLYALR----GGQGQAGFAGAGSGSLQVGAIDVLPLCEPLLTRICVELPVLNFSVRVHAAVFEAHGSIALLPCGNSAVRQF-GSGGAAVS-TLYKLHTGLSNQFTKIFSPYLQRLTEEVKTRGVGVSPVLRLEVAPQMVQALLVPYPSARTTLEQLLFHSVRSNNGSGNSGTSSTASERRDLGSLLRRLPRDCARACFLAMPQALGAMAAAGPHLCIKSWGPLFHVAGVLGCSVLLPSPSSETGLSCGGGGIDEKPTRRGFAGWILPSEEGEKEREQETENQMWAVVEAIWEFAFLQVIPEALPALKAEHHVTLDEALRELFSSLESLWPLLTGKDTRTRRPDLANAFLSSRPLWLEPLHAWVSEPWLSLRARKAAAGFVQRTLLPTLADTSANAAIVLAGD--GSGYRDGTVAHTGKKILGLVGGRLGAYEEEGKEGPGRDLTEKEIEAKTLRALQSAANMLCNDADQVD 2373
+W SS +P EVL AL+RQ DG R +G + NEA++KK+ EM+PL+V S A GG+ E + PG +AD AL FL++E++ AV R G R++ L A+L VLE CY GA S+ GPESWPWN+ + S W+ +WPVR+ + + VV+RA+ +V+LVLR HA AAWRV L ALR A SG ++ V+PLC PLL RIC+ELP+++ VRVHAAVFE HG ++LLPCG+SA+R G GG A S L LH+G +QF K+F PY+Q LTE VK RG VAP ++QALL P+AR LE+L+ SV S+ G R DL LL R P DCARACF A+PQALGAMAAAGPH +KSW PLF GVLGC+VLLP S+ G W E ++W V+EA+WEF FLQV LWPLLTG + RRP LA+ F SR LWL+PL +WVS WL AR+AAA FVQR+LLP L +S ++A D G D +V + +K + LVG +L A E +G + E EA L L+SAA + VD
Sbjct: 1 MWEYSSRQPSEVLEALERQTSYGDGADTADFRGTGRRMPPNEAIQKKVFEMLPLLVSSASAVDRPSGGTGVGTAVYGNQEVGGEADHPGAAARRVDDAAAAASVLPVADAALSFLSREIASLSAVAPEARRGAHGRRKLALAKAVLGVLENCYDGSAGGGASDDDYDSDVLGPESWPWNAAAXXXXXXXXXSGA------------------WYHPSWPVRSLPXXXXXXXXXXXXXXXXXXXXXXXNGSTAVAVVDRAARVVQLVLREHAGAAWRVALSALRPLPSASSXXXXXASQSSGRMEDDEC-VVPLCGPLLERICLELPLMDLPVRVHAAVFEVHGWLSLLPCGDSAIRAAEGRGGPAASRVLAALHSGTMSQFVKLFVPYVQGLTEIVKNRG----------VAPSILQALLATIPAARAALEELVSRSVFSDGG-----------RRGDLRLLLGRFPPDCARACFQAVPQALGAMAAAGPHFSLKSWSPLFQAVGVLGCAVLLPEASA--GDXXXXXXXXXXXXXXXXXXW--------------EECELWEVLEAVWEFIFLQV---------------------------GYLWPLLTGPVAQRRRPRLADGFYRSRSLWLQPLLSWVSAAWLPRVAREAAAIFVQRSLLPFLHASSCSSAANGGDDRGACGDDDPSVGVSPRKTIRLVGDKLCAVEGDGGSAWALSSGDPE-EADLLAVLKSAAAAATTEGTAVD 664 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig809.16100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig809.16100.1 >prot_H-paniculata_contig809.16100.1 ID=prot_H-paniculata_contig809.16100.1|Name=mRNA_H-paniculata_contig809.16100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=951bp MDRWVPVLEQGLIALAPGTGSSGSSSAGYASENESLHWSGLHVALQLLEPback to top mRNA from alignment at H-paniculata_contig809:2430..12493+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig809.16100.1 ID=mRNA_H-paniculata_contig809.16100.1|Name=mRNA_H-paniculata_contig809.16100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10064bp|location=Sequence derived from alignment at H-paniculata_contig809:2430..12493+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig809:2430..12493+ >mRNA_H-paniculata_contig809.16100.1 ID=mRNA_H-paniculata_contig809.16100.1|Name=mRNA_H-paniculata_contig809.16100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5706bp|location=Sequence derived from alignment at H-paniculata_contig809:2430..12493+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |