mRNA_H-paniculata_contig8084.16096.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8084.16096.1
Unique NamemRNA_H-paniculata_contig8084.16096.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8084.16096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8084contigH-paniculata_contig8084:5046..6825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size297
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8084.16096.1prot_H-paniculata_contig8084.16096.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8084 5046..6825 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931010.1981409-CDS-H-paniculata_contig8084:5045..51811622931010.1981409-CDS-H-paniculata_contig8084:5045..5181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8084 5046..5181 -
1691481549.3227763-CDS-H-paniculata_contig8084:5045..51811691481549.3227763-CDS-H-paniculata_contig8084:5045..5181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8084 5046..5181 -
1622931010.2144735-CDS-H-paniculata_contig8084:6154..62301622931010.2144735-CDS-H-paniculata_contig8084:6154..6230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8084 6155..6230 -
1691481549.3309815-CDS-H-paniculata_contig8084:6154..62301691481549.3309815-CDS-H-paniculata_contig8084:6154..6230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8084 6155..6230 -
1622931010.2279632-CDS-H-paniculata_contig8084:6740..68251622931010.2279632-CDS-H-paniculata_contig8084:6740..6825Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8084 6741..6825 -
1691481549.3424497-CDS-H-paniculata_contig8084:6740..68251691481549.3424497-CDS-H-paniculata_contig8084:6740..6825Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8084 6741..6825 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8084.16096.1

>prot_H-paniculata_contig8084.16096.1 ID=prot_H-paniculata_contig8084.16096.1|Name=mRNA_H-paniculata_contig8084.16096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
MLKLLEDEASHATRDGLSCQTMGRKLLGGKASHTFVSNLRLMFRGFEDVR
KEMRKTNPNDEMLSAKQHSDVLERFCTDLWERLEMEKRATKGRKADAVL
back to top

mRNA from alignment at H-paniculata_contig8084:5046..6825-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8084.16096.1 ID=mRNA_H-paniculata_contig8084.16096.1|Name=mRNA_H-paniculata_contig8084.16096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1780bp|location=Sequence derived from alignment at H-paniculata_contig8084:5046..6825- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGAAGTTGTTGGAGGATGAAGCCAGCCACGCCACTCGCGATGGACT
GTCTTGTCAGACTATGGGCCGGAAATTGCTGGGAGGTGAGCATTAGAACC
GTAAAACCATCTGGAAAAGTTAGAGGGGACATATCATTACGCTGTGTAGT
GTCGCAACACGAGTATGGGCGACCTCGTGAGAAACCTTTCGTGTTGCCTA
GTTCACTCTACCTGTCGTTTCTACAGACTGTATTCTCTTGGGTTTGTCTG
TTGCCGAAATATCGAATAATCGCCTTCATTTTGAACGATCCTTTCTGTTC
GAGGAAGGCAAAACAACAATCCAACAGCATCAACCCAACACATGATTCAG
CATTACCGACAGAAGACGACGTGCTTTAGTAGGGTATTCTTCGTTGGCCT
GTTTGCTGCTGCCTTGGACCGCTATCGCTTCGCAGAACAGCTGGTGCGCT
CCAACCCACAGCGCTTTAGTGTGACGCTCCGAAGCTATGGTGCACTATAC
AAACAGTACAACTGTTCCTAATTCTTAACATATATCGTCCATAGCAGTAA
CTTAGCAGCCTTTGCCCTTGACGTCCACCCTATGCGTGCAAGCAGGGAAG
GCTTCCCACACGTTCGTGTCAAATCTTCGGTTGATGTTTCGAGGCTTCGA
GGACGTGCGGAAGGAGATGAGGTATTACATTACGACTTACAGGATGTGAG
TTGATGGGATGAGTTGTGGAGTGCCATGGAAGGTTTTAGTCAGTGTAAAA
CGGAATGTGAACGACGCACACCAAAAAAGGACAAAGGAGGCGTCAGGCAC
TTGCTTACGGCACCACTTGTGGCAAGAAGCGATATTGAAAACATAATCAA
AACCCACCCTGCAGCATACGCCATGATTTACCCATAATGTGTCAACAACG
AGCAGGAAATTCGGTCTGTTGCTGTCCTCCGGTACTGCTGCTGTGAGCGA
GCATGCTGTGGGGCCGTCTGTTGTGTGCGAAGGGACTATCTGTACCACAA
ATGCTAGTGCATGAATGATGCTCCGCCATTCCCAAAAATGAAACCGTTTC
AAAATGCGCGTTGAACTATTGCCAAGAATAGAAGGCCGGAGGGTTCAATT
TTGGTCTCGTACGATCAAAAAAAAAAACGTCGCAGGCAAAACGTTCGATA
ACAAGTGGTTTTGAGGAATAGGTAGTTGCTATTTTTTTTTATCTAAAATG
AAGCTGGAGCCAACTGCCGTAAGGAACAGCGTCAATGCAATCGGAAAACG
CAACTTTCTCTTGACGCGCAAAATGCTGCAACGCGTGCTGCGTCAGCAAC
AAGGCATGATAGGGTAGCACAGTCAGATCAGGCACGCTATTCGCCCGAAG
AAATGCGTAGGGTAGGATCCAGCATGGGAGTACCATCCGCGAAAAAATAT
GGTAGCACGTACCGCCAGAAAAAATTCCACGACCAATATCGACCGTGTTG
CACAGTAGCTGCATACCGCACGAAATTAAGCCCTTTGATAAACGTCGGTG
TCGGTGTGACTGCAGAGTATGGACTCGTCACCAGGTAAAAATCGATACTC
AATGGCAGAAGTCGAGGGGGCAAGCGAGCAGCACAGAAATGATGACTTTC
TCCCTCGATCTTTTGCCGATACCGTTCACGTCTTCGTCCCACAGAAAGAC
AAACCCGAACGACGAGATGCTTTCCGCGAAACAGCACAGCGACGTTCTTG
AACGCTTCTGTACAGACCTGTGGGAGCGATTGGAGATGGAGAAGAGGGCT
ACGAAAGGGAGGAAGGCGGATGCCGTCTTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8084:5046..6825-

>mRNA_H-paniculata_contig8084.16096.1 ID=mRNA_H-paniculata_contig8084.16096.1|Name=mRNA_H-paniculata_contig8084.16096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig8084:5046..6825- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGAAGTTGTTGGAGGATGAAGCCAGCCACGCCACTCGCGATGGACT
GTCTTGTCAGACTATGGGCCGGAAATTGCTGGGAGATGCTGAAGTTGTTG
GAGGATGAAGCCAGCCACGCCACTCGCGATGGACTGTCTTGTCAGACTAT
GGGCCGGAAATTGCTGGGAGGGAAGGCTTCCCACACGTTCGTGTCAAATC
TTCGGTTGATGTTTCGAGGCTTCGAGGACGTGCGGAAGGAGATGAGGGAA
GGCTTCCCACACGTTCGTGTCAAATCTTCGGTTGATGTTTCGAGGCTTCG
AGGACGTGCGGAAGGAGATGAGAAAGACAAACCCGAACGACGAGATGCTT
TCCGCGAAACAGCACAGCGACGTTCTTGAACGCTTCTGTACAGACCTGTG
GGAGCGATTGGAGATGGAGAAGAGGGCTACGAAAGGGAGGAAGGCGGATG
CCGTCTTGAAAGACAAACCCGAACGACGAGATGCTTTCCGCGAAACAGCA
CAGCGACGTTCTTGAACGCTTCTGTACAGACCTGTGGGAGCGATTGGAGA
TGGAGAAGAGGGCTACGAAAGGGAGGAAGGCGGATGCCGTCTTG
back to top