mRNA_H-paniculata_contig8081.16091.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8081.16091.1
Unique NamemRNA_H-paniculata_contig8081.16091.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8081.16091.1 vs. uniprot
Match: D8LDW6_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDW6_ECTSI)

HSP 1 Score: 319 bits (818), Expect = 2.770e-108
Identity = 164/220 (74.55%), Postives = 183/220 (83.18%), Query Frame = 1
Query:    1 MKTSFCAAAG-AVAAGLVASSAHAM-VATAQQEITAFNPEDFVFPLGGPEPDNIDASGFQSRVANVNQIPALEGQGVAMVLFNLEPCAINLPHEHPRATEMLYVIKGEHLRVAFVEENEGEGAVVNDLYQGDVTFYPQGLIHYQQNLDCEPATYLSALNNEDPGVVTITTRFFDLPSEAIQASLNFDDPTLKALIESLPEAPALARRQCLQRCGLPSDDD 654
            MKTSFC+AAG  VAAG ++S+A A  V TAQQ+IT FNPEDFVF LGGPEPD     GFQ R A + QIPAL+GQG+AM L NL+ C INLPH HPRATEM YVI GEHLRVAFVEEN GEGAVVNDL QGDVTF+PQGLIHY+QNL CEP T+L+ALNN+DPG VTITTRFF+LPSEAIQASLNF+DP L+ LIESLP+APA ARRQCL+RCGL    D
Sbjct:    1 MKTSFCSAAGLVVAAGFMSSTAQASGVVTAQQQITMFNPEDFVFTLGGPEPD-APVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATEMQYVINGEHLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELPSEAIQASLNFEDPALQRLIESLPDAPAAARRQCLERCGLADGGD 219          
BLAST of mRNA_H-paniculata_contig8081.16091.1 vs. uniprot
Match: A0A6H5JV79_9PHAE (Cupin type-1 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV79_9PHAE)

HSP 1 Score: 314 bits (804), Expect = 4.760e-106
Identity = 158/214 (73.83%), Postives = 183/214 (85.51%), Query Frame = 1
Query:    1 MKTSFCAAAG-AVAAGLVASSAHAMVATAQQEITAFNPEDFVFPLGGPEPDNIDASGFQSRVANVNQIPALEGQGVAMVLFNLEPCAINLPHEHPRATEMLYVIKGEHLRVAFVEENEGEGAVVNDLYQGDVTFYPQGLIHYQQNLDCEPATYLSALNNEDPGVVTITTRFFDLPSEAIQASLNFDDPTLKALIESLPEAPALARRQCLQRCGL 639
            MKTSFCAAAG  +AAGL+++     V T QQ+IT +NPEDFVF LGGPEPD +   GFQ R A VNQ+PAL+GQG++M L NL+PCAINLPH HPRATEM+YVIKGE LRVAFVEEN GEGAVVNDL QGDV F+PQGLIHYQQNLDCEPAT+L+ALNNEDPG +TITTRFF+LP EAIQAS+NF++P L+ LIESLP+APA AR+QCLQRC +
Sbjct:    1 MKTSFCAAAGFVIAAGLMSAVQVCGVVTVQQQITLYNPEDFVFSLGGPEPDAL-VDGFQLRTAVVNQLPALDGQGISMGLVNLDPCAINLPHIHPRATEMVYVIKGEQLRVAFVEENGGEGAVVNDLAQGDVAFFPQGLIHYQQNLDCEPATFLAALNNEDPGAITITTRFFELPLEAIQASVNFEEPVLQNLIESLPDAPAAARQQCLQRCRM 213          
BLAST of mRNA_H-paniculata_contig8081.16091.1 vs. uniprot
Match: A0A0L0GAB9_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GAB9_9EUKA)

HSP 1 Score: 154 bits (389), Expect = 1.660e-43
Identity = 80/183 (43.72%), Postives = 110/183 (60.11%), Query Frame = 1
Query:  103 FNPEDFVFPLGGPEPD---NIDASGFQSRVANVNQIPALEGQGVAMVLFNLEPCAINLPHEHPRATEMLYVIKGEHLRVAFVEENEGEGAVVNDLYQGDVTFYPQGLIHYQQNLDCEPATYLSALNNEDPGVVTITTRFFDLPSEAIQASLNFDDPTLKALIESLPEAPALARRQCLQRCGLP 642
            F+ EDFVF     E     + D +G  S+ AN+N  P ++   +A   F + PC INLPH HPR TE  Y+I+GE L V FV E+     V+ND+     TF+PQGL+HYQQN+ CEPA ++S L++ DPG++ I      LP EAI A+ + D+  +  +   LP+ PA  R +CL RCGLP
Sbjct:   22 FDAEDFVFDFSDFETGVRVDSDGNGGSSQPANINTFPVVQVANMAQTRFRIAPCGINLPHVHPRGTESAYMIEGE-LTVGFVMESGR--TVINDIKADQSTFFPQGLLHYQQNMGCEPAGFISILDSSDPGLLVIAAAVAGLPEEAIAAAFDEDEAFVAQMRMGLPKVPARGRAECLVRCGLP 201          
BLAST of mRNA_H-paniculata_contig8081.16091.1 vs. uniprot
Match: A0A0L0FR85_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FR85_9EUKA)

HSP 1 Score: 155 bits (392), Expect = 5.530e-43
Identity = 78/184 (42.39%), Postives = 114/184 (61.96%), Query Frame = 1
Query:  103 FNPEDFVFPLGGPEPDNIDASGFQSRVANVN--QIPALEGQGVAMVLFNLEPCAINLPHEHPRATEMLYVIKGEHLRVAFVEENEGEGAVVNDLYQGDVTFYPQGLIHYQQNLDCEPATYLSALNNEDPGVVTITTRFFDLPSEAIQASLNFDDPTLKALIESLPEAPALARRQCLQRCGLPSD 648
            F+ EDFVF         +D+ G    +  VN  + P ++  G++   F++ PC INLPH HPRATE LY+I+G+ + + FV   +    ++NDL +  VTF+P+G +HYQQN++CE A ++S L+NEDPGV+ +++    LP EA+ A+ N D   +  L   LPE PA AR +CL RCGL  D
Sbjct:  105 FDNEDFVFDFTDSNKVTVDSLGLGGNIQPVNLEEFPIMQLAGMSYSRFSIGPCGINLPHVHPRATESLYMIEGQ-VTLGFVSTEDR--LIMNDLEKDQVTFFPKGHLHYQQNMNCENAEFISILDNEDPGVLVVSSALLSLPDEALTATFNEDQALIAQLRLGLPEGPARARSECLARCGLDMD 285          
BLAST of mRNA_H-paniculata_contig8081.16091.1 vs. uniprot
Match: A0A0L0FUE8_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FUE8_9EUKA)

HSP 1 Score: 153 bits (386), Expect = 5.080e-42
Identity = 78/179 (43.58%), Postives = 108/179 (60.34%), Query Frame = 1
Query:  103 FNPEDFVFPLGGPEPDNIDASGFQSRVANVNQIPALEGQGVAMVLFNLEPCAINLPHEHPRATEMLYVIKGEHLRVAFVEENEGEGAVVNDLYQGDVTFYPQGLIHYQQNLDCEPATYLSALNNEDPGVVTITTRFFDLPSEAIQASLNFDDPTLKALIESLPEAPALARRQCLQRCGL 639
            F+ EDFV      +P      G  S+ AN N +P ++   +A   F + PC INLPH HPR TE +Y+I+G  L V FV   EG   ++ND+     TF+PQGL+HYQQN+ CEPA ++S LN+ DPG++ I     +LPSEA++A+ + D   +  L   LP  PA  R +CL+RCGL
Sbjct:  119 FDAEDFVIDFA-TQPLESTGLGGTSQPANRNNVPVIQASNMAQTRFRIAPCGINLPHVHPRGTESVYIIEGA-LTVGFV--TEGGRLILNDVKTDQSTFFPQGLLHYQQNMACEPAGFISILNSSDPGLLVIPAALAELPSEALEATFDEDAAFVNQLRIGLPAGPARGRAECLRRCGL 293          
BLAST of mRNA_H-paniculata_contig8081.16091.1 vs. uniprot
Match: A0A0G4EJ88_VITBC (Cupin type-1 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EJ88_VITBC)

HSP 1 Score: 147 bits (372), Expect = 1.130e-39
Identity = 79/179 (44.13%), Postives = 109/179 (60.89%), Query Frame = 1
Query:  115 DFVFPLGGPEPDNIDASGFQSRV--ANVNQIPALEGQGVAMVLFNLEPCAINLPHEHPRATEMLYVIKGEHLRVAFVEENEGEGAVVNDLYQGDVTFYPQGLIHYQQNLDCEPATYLSALNNEDPGVVTITTRFFDLPSEAIQASLNFDDPTLKALIESLPEAPALA--RRQCLQRCGL 639
            DF+F       +  D +G    V  A+V+Q PAL G G++  L +L PC+IN PH HPRATE++Y+IKG  + V F EEN G   V ND+ +GD  F+P  LIH+Q N  CEPA +++ LN++D GV TI   FF LP + +  +L  D+  +  L E LP  PAL   R +C ++CGL
Sbjct:  144 DFIFDFNTARAE-ADTNGQGGAVTGASVSQWPALSGHGLSHTLVDLAPCSINTPHVHPRATEIIYIIKGR-VSVGFAEENGGR-IVTNDVKEGDTAFFPHTLIHWQFNPTCEPAQFIATLNSDDGGVQTIAQAFFGLPDDVLATALGVDEYEVAVLREELPAGPALGLQREECRRKCGL 319          
BLAST of mRNA_H-paniculata_contig8081.16091.1 vs. uniprot
Match: A0A836CNU2_9STRA (RmlC-like cupin domain-containing protein n=7 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNU2_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.410e-38
Identity = 80/184 (43.48%), Postives = 105/184 (57.07%), Query Frame = 1
Query:  115 DFVFPLGGPEPDNIDASGFQSRVANVNQIPALEGQGVAMVLFNLEPCAINLPHEHPRATEMLYVIKG--EHLRVAFVEENEGEGAVVNDLYQGDVTFYPQGLIHYQQNLDCEPATYLSALNNEDPGVVTITTRFF------DLPSEAIQASLNFDDPTLKALIESLPEAPALARRQCLQRCGLP 642
            DF F L G +    +  G  ++  +  Q+P+L G+ VAMV   LEPC INLPH HPRATE+LYV+    E +  AFVEEN G   + N +  G+  F+PQGL H Q N+ C PAT ++AL ++D GV TITT         D   E + A+L      L  LI   P+ PA+   +C QRCGLP
Sbjct:   60 DFKFDLDGSKATTGNGGG-SAQTLSAAQLPSLTGEKVAMVKLVLEPCGINLPHVHPRATEILYVVDAAAEGVLTAFVEENGGR-TIENTIVTGEAAFFPQGLTHVQVNMGCTPATMIAALGSDDFGVQTITTTALKGLAGADGLGEGLAAALGISQDQLAVLIGGFPDGPAIGAAECRQRCGLP 241          
BLAST of mRNA_H-paniculata_contig8081.16091.1 vs. uniprot
Match: A0A814L9M3_ADIRI (Hypothetical protein n=3 Tax=Adineta ricciae TaxID=249248 RepID=A0A814L9M3_ADIRI)

HSP 1 Score: 142 bits (358), Expect = 2.470e-38
Identity = 74/180 (41.11%), Postives = 110/180 (61.11%), Query Frame = 1
Query:  106 NPEDFVFPLGGPEPDNIDASGFQSRVANVNQIPALEGQGVAMVLFNLEPCAINLPHEHPRATEMLYVIKGEHLRVAFVEENEGEGAVVNDLYQGDVTFYPQGLIHYQQNLDCEPATYLSALNNEDPGVVTITTRFFD-LPSEAIQASLN-FDDPTLKALIESLPEAPALARRQCLQRCGL 639
            NP DF+F            +G ++  A  +  P L G GVAM L  L PC INLPH HPRATE+ Y + G H +V F +EN G   ++N++ +  V  +P+G IH++QNL+CEPAT+++A N+EDPGV+TI   +F  LP+  I A+L   +  T++ +  ++   P+L   +C +RCGL
Sbjct:   73 NPSDFIFDFNNATTGVSRGTGGRTVSATASNFPGLIGHGVAMTLGFLGPCGINLPHTHPRATEINYSVDG-HFQVGFYQEN-GAAFIMNEIQKNQVAVFPKGAIHFEQNLNCEPATFVAAFNSEDPGVLTIANAYFGALPATVIGANLGGLNITTIEDIRMNIQGNPSLGIEECRRRCGL 250          
BLAST of mRNA_H-paniculata_contig8081.16091.1 vs. uniprot
Match: A0A835YZF9_9STRA (RmlC-like cupin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZF9_9STRA)

HSP 1 Score: 140 bits (352), Expect = 3.720e-38
Identity = 79/184 (42.93%), Postives = 105/184 (57.07%), Query Frame = 1
Query:  115 DFVFPLGGPEPDNIDASGFQSRVANVNQIPALEGQGVAMVLFNLEPCAINLPHEHPRATEMLYVIKG--EHLRVAFVEENEGEGAVVNDLYQGDVTFYPQGLIHYQQNLDCEPATYLSALNNEDPGVVTITTRFFDLPS------EAIQASLNFDDPTLKALIESLPEAPALARRQCLQRCGLP 642
            DF F L G      +  G  ++  +  Q+P+L G+ VAMV   LEPC INLPH HPRATE+LYV+    E +  AFVEEN G   + N +  G+  F+PQGL H Q N+ C PAT ++AL ++D GV TITT   +  +      E + A+L      L  LI   P+ PA+   +C QRCGLP
Sbjct:    9 DFKFDLAGSTATAGNGGG-SAQTLSAAQLPSLTGEKVAMVKLVLEPCGINLPHVHPRATEILYVVDAAAEGVLTAFVEENGGR-TIENTVVAGEAAFFPQGLTHMQVNMGCTPATMIAALGSDDFGVQTITTTALEGLAGAEGLGEGLAAALGISQDQLAVLIGGFPDGPAIGAAECRQRCGLP 190          
BLAST of mRNA_H-paniculata_contig8081.16091.1 vs. uniprot
Match: A0A433DF28_9FUNG (RmlC-like cupin n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433DF28_9FUNG)

HSP 1 Score: 140 bits (354), Expect = 6.210e-38
Identity = 76/189 (40.21%), Postives = 115/189 (60.85%), Query Frame = 1
Query:   79 TAQQEITAFNPEDFVFPLGGPEPDNIDASGFQSRVANVNQIPALEGQGVAMVLFNLEPCAINLPHEHPRATEMLYVIKGEHLRVAFVEENEGEGAVVNDLYQGDVTFYPQGLIHYQQNLDCEPATYLSALNNEDPGVVTITTRFFD-LPSEAIQASLN-FDDPTLKALIESLPEAPALARRQCLQRCGL 639
            T  Q ++  + +DFVF     +       G ++  A     PAL G  +AM +  + PC+INLPH HPRATE+ ++ +G+     F EEN G   +VN L++G+VT +P G IH++QNL+CEPA +++A N+EDPGV TI + F   LP++ + ASL       +K L + LP+ PA+  ++C +RCGL
Sbjct:   47 TETQRLSLLDNKDFVFNFLTSKTGVSMGDGGRTVAATAANFPALIGHNIAMTVGFIGPCSINLPHIHPRATEINFIAQGK-FEAGFFEEN-GARFIVNTLHKGEVTVFPMGAIHFEQNLNCEPAVFVAAFNSEDPGVSTIGSNFIGGLPADIVSASLRGLSIEQVKELTKYLPKNPAIGIQECRKRCGL 233          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8081.16091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDW6_ECTSI2.770e-10874.55Cupin-like protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JV79_9PHAE4.760e-10673.83Cupin type-1 domain-containing protein n=6 Tax=Ect... [more]
A0A0L0GAB9_9EUKA1.660e-4343.72Cupin type-1 domain-containing protein n=1 Tax=Sph... [more]
A0A0L0FR85_9EUKA5.530e-4342.39Cupin type-1 domain-containing protein n=1 Tax=Sph... [more]
A0A0L0FUE8_9EUKA5.080e-4243.58Cupin type-1 domain-containing protein n=1 Tax=Sph... [more]
A0A0G4EJ88_VITBC1.130e-3944.13Cupin type-1 domain-containing protein n=2 Tax=Vit... [more]
A0A836CNU2_9STRA1.410e-3843.48RmlC-like cupin domain-containing protein n=7 Tax=... [more]
A0A814L9M3_ADIRI2.470e-3841.11Hypothetical protein n=3 Tax=Adineta ricciae TaxID... [more]
A0A835YZF9_9STRA3.720e-3842.93RmlC-like cupin domain-containing protein n=1 Tax=... [more]
A0A433DF28_9FUNG6.210e-3840.21RmlC-like cupin n=2 Tax=Jimgerdemannia flammicoron... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8081contigH-paniculata_contig8081:1035..3129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score323.2
Seed ortholog evalue9.8e-86
Seed eggNOG ortholog2880.D8LDW5
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.nutrient reservoir activity
EggNOG OGs2BYKQ@1,2QQ4A@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size669
Cds size669
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8081.16091.1prot_H-paniculata_contig8081.16091.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8081 1035..3129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931009.81041-CDS-H-paniculata_contig8081:1034..11211622931009.81041-CDS-H-paniculata_contig8081:1034..1121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8081 1035..1121 +
1691481549.2113495-CDS-H-paniculata_contig8081:1034..11211691481549.2113495-CDS-H-paniculata_contig8081:1034..1121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8081 1035..1121 +
1622931009.8337886-CDS-H-paniculata_contig8081:2041..22481622931009.8337886-CDS-H-paniculata_contig8081:2041..2248Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8081 2042..2248 +
1691481549.2222872-CDS-H-paniculata_contig8081:2041..22481691481549.2222872-CDS-H-paniculata_contig8081:2041..2248Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8081 2042..2248 +
1622931009.8572068-CDS-H-paniculata_contig8081:2528..27711622931009.8572068-CDS-H-paniculata_contig8081:2528..2771Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8081 2529..2771 +
1691481549.2308078-CDS-H-paniculata_contig8081:2528..27711691481549.2308078-CDS-H-paniculata_contig8081:2528..2771Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8081 2529..2771 +
1622931009.8714516-CDS-H-paniculata_contig8081:2997..31291622931009.8714516-CDS-H-paniculata_contig8081:2997..3129Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8081 2998..3129 +
1691481549.2389157-CDS-H-paniculata_contig8081:2997..31291691481549.2389157-CDS-H-paniculata_contig8081:2997..3129Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8081 2998..3129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8081.16091.1

>prot_H-paniculata_contig8081.16091.1 ID=prot_H-paniculata_contig8081.16091.1|Name=mRNA_H-paniculata_contig8081.16091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=223bp
MKTSFCAAAGAVAAGLVASSAHAMVATAQQEITAFNPEDFVFPLGGPEPD
NIDASGFQSRVANVNQIPALEGQGVAMVLFNLEPCAINLPHEHPRATEML
YVIKGEHLRVAFVEENEGEGAVVNDLYQGDVTFYPQGLIHYQQNLDCEPA
TYLSALNNEDPGVVTITTRFFDLPSEAIQASLNFDDPTLKALIESLPEAP
ALARRQCLQRCGLPSDDDKKHD*
back to top

mRNA from alignment at H-paniculata_contig8081:1035..3129+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8081.16091.1 ID=mRNA_H-paniculata_contig8081.16091.1|Name=mRNA_H-paniculata_contig8081.16091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2095bp|location=Sequence derived from alignment at H-paniculata_contig8081:1035..3129+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGACCTCCTTCTGCGCTGCTGCTGGTGCCGTCGCCGCGGGGCTCGT CGCTTCTAGTGCGCACGCGATGGTCGCCACGGCACAGGTGAGCTCTACGG GCAGATGATGTAGTTCTCGCGCGGGTATACAGACAGTGTGAGAGATTCGT GTAAGTGAAACCAACACACAGTTCAACCATTCGATGAACGTCGGACAGCA GGCAATTGATCTTCGCTGGATGACATCAAGTTCGATTTTTTCGGAAGTCT TTTCCATGTACTTAGCTGTCATGCACACTGTCTAATAGTGGAACATGCCT TCGTCTAGAGATGTGCAGACGAAGTCCTCTTAAACCGTCCTACGTGTGAT ACGAGCACAGAGATAACAAGCACGCGGGGAATGCATCAGTCGCAAACATT ACCCGAGCTATCTTCCAGAAACCTGTTCCTCTGAATCCAAGGAAATTTCT TAGCAGACAGTCAGTACTGGCTGCTGGTGCTGGTGAAGGTACTACGCACG AGTATCTACAGCGAGTATTGTGGGTGGTACAACAACTTGTTGATTCGCGA TGTACCTCTCCCGGCGGTGGGTACTTTATGTCGCCCCTCCCCCGTGAGGC AGTCGCGGCTATGCAAGTTTAGCCTAAGGGTGACACCGCGTCGTATCTAC CGAAGGTGGTACGCATCTTGCTGTGCTACTCGGCCACTCGAACACTCCAA AAATACATCGTAATATTGCTGACATCTTGCAAACGCCCCCCACGGTAGGT AGAGGGGAGTCGACCGTGTGAGCAAACCACGCCAAATCACTCAAAAAGAA GAAATCGCTTGTCGGACTCACAGCGGTTACGACTGGGATGGTGTAATGTT TCCTCCGTGTGCAGCCTGACGCAGAAAACACGGTGGGTGGTCTCTAACTT TCCCTACACATTCGGATCATCTCAATATCATCATCCGCCTGATTCTAGCC GAAAACTCTCTCATATTTTTCCATCCACCTTGCTGGTGCCTTGTCTTTTT TTTGCAGCAAGAAATCACGGCCTTCAACCCCGAGGACTTCGTCTTCCCCC TCGGCGGCCCCGAACCTGATAACATAGATGCAAGCGGCTTCCAGAGCCGC GTTGCCAACGTCAACCAGATCCCCGCTCTGGAGGGACAGGGCGTCGCTAT GGTCCTCTTCAACCTCGAGCCCTGCGCCATCAACTTGCCTCACGAGCACC CGCGTGCCACCGAGGTGAGCTCACGCAAGTTCACTGTCGAACCATCACCA ACACGTTACGTTGCTTTGGATTGATTCGAGTGTGGTAGAAGGAGGACCTC GTATATCGTTTATACCGCGGATGTCCCGCGGCAATAGATACGTACACTCG TCGTGCCTCATCGCGCGCCGTACGCGAGCCTTATGCGTGGGTTCACGACC GAGGACACAAACACCGACCCGGTACGTCCTATGTCTCACTCACCCCGCTA ACCCTCCTCCCGCGTTGCCGTTAATTGGCTCTCCATCTGCGCAGATGCTG TACGTGATCAAAGGGGAGCATTTGCGGGTAGCCTTCGTAGAGGAGAACGA AGGCGAGGGGGCCGTGGTCAATGACCTCTACCAGGGAGATGTGACCTTCT ACCCCCAGGGCCTCATCCACTACCAGCAGAACCTCGACTGTGAACCCGCC ACGTACCTATCCGCGCTGAACAATGAAGATCCCGGCGTGGTCACCATCAC GACCCGCTTCTTCGACCTACCCAGCGAGGCCATCCAGGTGAGGATTCCAG TGTTACGAAACACATCTAACAGGAATACTGCAAGCAAGTAGCGAAGCCCG CCCAATGACCGCCGCTCGATTGTCCGTCGTCTTCGTCGGCTCGATCTTCG TTCACAGTGCCCCTGTATAACATAACGTCGATATCGTTCGCACTTTCTTG GTCGGATCACGGTTGTCACGTGTCCTTCGATTCCTCACCTGCCGTTCGGT TTCGTGTATACAGGCGTCGCTGAACTTCGACGACCCCACGCTCAAAGCTC TCATCGAGTCGCTGCCGGAGGCACCCGCCTTGGCCCGCCGTCAGTGCCTC CAGCGTTGCGGCCTGCCCTCCGACGACGACAAGAAGCACGATTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8081:1035..3129+

>mRNA_H-paniculata_contig8081.16091.1 ID=mRNA_H-paniculata_contig8081.16091.1|Name=mRNA_H-paniculata_contig8081.16091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1338bp|location=Sequence derived from alignment at H-paniculata_contig8081:1035..3129+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGACCTCCTTCTGCGCTGCTGCTGGTGCCGTCGCCGCGGGGCTCGT
CGCTTCTAGTGCGCACGCGATGGTCGCCACGGCACAGATGAAGACCTCCT
TCTGCGCTGCTGCTGGTGCCGTCGCCGCGGGGCTCGTCGCTTCTAGTGCG
CACGCGATGGTCGCCACGGCACAGCAAGAAATCACGGCCTTCAACCCCGA
GGACTTCGTCTTCCCCCTCGGCGGCCCCGAACCTGATAACATAGATGCAA
GCGGCTTCCAGAGCCGCGTTGCCAACGTCAACCAGATCCCCGCTCTGGAG
GGACAGGGCGTCGCTATGGTCCTCTTCAACCTCGAGCCCTGCGCCATCAA
CTTGCCTCACGAGCACCCGCGTGCCACCGAGCAAGAAATCACGGCCTTCA
ACCCCGAGGACTTCGTCTTCCCCCTCGGCGGCCCCGAACCTGATAACATA
GATGCAAGCGGCTTCCAGAGCCGCGTTGCCAACGTCAACCAGATCCCCGC
TCTGGAGGGACAGGGCGTCGCTATGGTCCTCTTCAACCTCGAGCCCTGCG
CCATCAACTTGCCTCACGAGCACCCGCGTGCCACCGAGATGCTGTACGTG
ATCAAAGGGGAGCATTTGCGGGTAGCCTTCGTAGAGGAGAACGAAGGCGA
GGGGGCCGTGGTCAATGACCTCTACCAGGGAGATGTGACCTTCTACCCCC
AGGGCCTCATCCACTACCAGCAGAACCTCGACTGTGAACCCGCCACGTAC
CTATCCGCGCTGAACAATGAAGATCCCGGCGTGGTCACCATCACGACCCG
CTTCTTCGACCTACCCAGCGAGGCCATCCAGATGCTGTACGTGATCAAAG
GGGAGCATTTGCGGGTAGCCTTCGTAGAGGAGAACGAAGGCGAGGGGGCC
GTGGTCAATGACCTCTACCAGGGAGATGTGACCTTCTACCCCCAGGGCCT
CATCCACTACCAGCAGAACCTCGACTGTGAACCCGCCACGTACCTATCCG
CGCTGAACAATGAAGATCCCGGCGTGGTCACCATCACGACCCGCTTCTTC
GACCTACCCAGCGAGGCCATCCAGGCGTCGCTGAACTTCGACGACCCCAC
GCTCAAAGCTCTCATCGAGTCGCTGCCGGAGGCACCCGCCTTGGCCCGCC
GTCAGTGCCTCCAGCGTTGCGGCCTGCCCTCCGACGACGACAAGAAGCAC
GATTGAGCGTCGCTGAACTTCGACGACCCCACGCTCAAAGCTCTCATCGA
GTCGCTGCCGGAGGCACCCGCCTTGGCCCGCCGTCAGTGCCTCCAGCGTT
GCGGCCTGCCCTCCGACGACGACAAGAAGCACGATTGA
back to top