mRNA_H-paniculata_contig808.16087.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig808.16087.1
Unique NamemRNA_H-paniculata_contig808.16087.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig808.16087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig808contigH-paniculata_contig808:16469..19002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size213
Cds size117
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig808.16087.1prot_H-paniculata_contig808.16087.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig808 16565..19002 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931009.2057528-UTR-H-paniculata_contig808:16468..165641622931009.2057528-UTR-H-paniculata_contig808:16468..16564Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig808 16469..16564 -
1691481548.9968257-UTR-H-paniculata_contig808:16468..165641691481548.9968257-UTR-H-paniculata_contig808:16468..16564Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig808 16469..16564 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931009.2269864-CDS-H-paniculata_contig808:16564..165711622931009.2269864-CDS-H-paniculata_contig808:16564..16571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig808 16565..16571 -
1691481549.0072665-CDS-H-paniculata_contig808:16564..165711691481549.0072665-CDS-H-paniculata_contig808:16564..16571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig808 16565..16571 -
1622931009.245123-CDS-H-paniculata_contig808:18892..190021622931009.245123-CDS-H-paniculata_contig808:18892..19002Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig808 18893..19002 -
1691481549.0172527-CDS-H-paniculata_contig808:18892..190021691481549.0172527-CDS-H-paniculata_contig808:18892..19002Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig808 18893..19002 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig808.16087.1

>prot_H-paniculata_contig808.16087.1 ID=prot_H-paniculata_contig808.16087.1|Name=mRNA_H-paniculata_contig808.16087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=39bp
RAALKTPFRHKADRVRLPSSPLVKESKFDVEDSSIDRT*
back to top

mRNA from alignment at H-paniculata_contig808:16469..19002-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig808.16087.1 ID=mRNA_H-paniculata_contig808.16087.1|Name=mRNA_H-paniculata_contig808.16087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2534bp|location=Sequence derived from alignment at H-paniculata_contig808:16469..19002- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGCTGCGTTGAAGACGCCCTTCCGACACAAGGCAGATCGGGTGCGTCT
ACCTTCTTCACCGCTTGTGAAAGAATCGAAGTTCGACGTGGAAGACAGCA
GCATCGACAGGTTCGTGTTCAACTTTGTTAGAGGTTTGCGGTGGTAGGGG
ATTCATCGTGAAATGTTCGTTTTTACAATGTTCGCCGCAGAAGATCAGGG
TGTTGCAAATATGTCTCTCTGCTGTATCGTAAGTCCGATGGATGTTATTG
AGAGGACGCGCAACGTTTCCCCACGTGGTCGGCGTTTTCAAGACGGCTTT
CTTTCGAATTGTTGTCACCTGCTGTGTGTATGGGGTCTAACAATTTTATC
CACGTTGAGAGTGCGAGTTATTTTATGGTCGAGTCTTTTAATTATCAGGC
ACACGAGAAGACCATTCGGAAAACGGGTAGTGCACTCAGAACGATCCGTC
AAGCTAACAGGTCACTATGCTTATTATCGAATTCGTTTGTTTGGGACTTC
ACGAAGAGTTGATTTCCAGAATAAGATTAGGTAGTCCTTCATGTCTCACA
AAATCGTACTATGTTGTTTTTACGGTAGGCGTCGACCCATCATTGTATTC
TACAATTCTCACCTCTTCTTCTAATACGTGTTTTTGCGATTTACTCTGTC
TACTCTATGTTTTCGGGATTAACACCATCTACTATAAGTTCTCGTGATTT
TACACTATCTACTATTCGTTTTCGTGATTTAGATTATTCGGTAGATAGTT
GGATTGCTATCTAGACATACTCTTACGTAATTTTCTAGAATATTCTACAG
ATAATCCAGAGCCGACTAGGGTCCGTGACGCGCCTATTGGGCAAAGAGCA
TCTTTTGCACATCCTCAATAAGAAATGCCAACTCATCGATCAGTTTCAAT
TCAGAGAGCTCCTGGAGCCGATGTATTCGATGGGATGCACAGCAACAGTC
ACCCATTCATCCACATTATGTGTTTCCAGTAAGGGTAGTTCTACGCAGGA
CCTACGCGGACTTCGGGACAATATCATCTTTGATCTCGCACGTGCTATAA
CCATATGTTAGATGTTGCACATTCAGGGATACTGATGTACCAGCGACCTG
ATTCAAGTGTGCTGTTTACTGCAGAAAAAAAAGCAATCAATATCTGTATA
CTCACCGTCTTGCTGCATTGAAAAAGCATGACGAGACGCGTCGATACCTT
TCTTTGAGAGTCCTCGTGCGGCAAGGGGTACCCCCTTAATTTCACCTACT
AGATTGGCGAGTCATTCGTGAGTGACCACGTCTCAAAATCTCGTTGAGTT
TTAAATATGTAACGTTGGCTTAACCACGGCACTCCAACTATGAACCAAAA
TAACAAAAAACCGAACAAGTTAATTTGGTCAACATATTGGGATAGTCACT
CACGAGTGACTCCTTCCGCTGAAAGGAGTGATTCTAGATGTGACCCCCCT
ATATCAGGACGACTCAAGGTACACCTTGTGCGTACAGAGATAATAATAGT
ATGTCTTGTCAATGGAGTGTGCCCGGAAAGACGTACAGTGTGGGACACAG
TTAACCCGGAACATATTCTCCCTTGCTGGTCGCTCTATCGAATATCTCAC
AGACCCCGCTTGTTGACAAAGGACGATCAAGAACTCACAATGGTTGTTCG
CTATTTCAAGAAGTTTGGGGCGAAGGGGGGGTACGAAGGACTTACTCAAC
AGGTGACCGACGAAGTCAACAACATTGTTAGTATGATATATATTTCCATG
GGCATTAGGCCTTCTGTACCTTGTAGTGTTGGTGCGGGAGCGTTATAGCT
TGGACATCCACAGCGGATATAGGTAGCTTGGATGGGCATTGTGTTATATA
TTGCATTTCCAGATGGGGATCTTCATCTTGTTGTAGATCAACTTGTTTGG
GACTGAGAGTGAGTAGTCCTTCGGCAAGTGTCCGAGGGATTTTCGCTCAT
GACATGGCACACATCACATCAGCAATATCACAAAACTTTCCTTTATAGGA
TACCTTTTCTCTCGCAAGGAAGTGACGTCAGTATAATAACTAACCAGTCA
ATGATTTCCTCCGTCAATCGTTACAGAATAGATTTCCGCACCAACACGTT
ACTGTTATATATCGGAGTATATGAGGGAAAAGGCAAATGCCTCCTTCACA
TATACTAGTAGAATGCTACGCTTACTTGACGGTAAGGTAACTTAACGTTG
AATCAAGTAGACCTATAGCTCCCACGACCTACTTGTCATCGTGATGATGA
TGAACGAAAAAGTCCTAAAAAAAATAGGTCAGGCCTCGCGACCCAGCTCG
CTGTCAATTGCGCACTGACCAATAAACATACTTGTAGTCATGATATCTTC
ATAAGGCCCAACGCACGGCTGTGTCTTGCTTTTTATTTTGTTTTCTGTGG
CGGCCGTTTCTATTTTCTGATTAATGTTCAGGACCTAGAGTCCGCCTTTC
GAGCGTCCAGGCGAGCGGAGGCGTTCTTATCCATCGAGAAGAGAGGCAAG
GCAGCGTTTGCGAAGGTACAGATGTGAAGTAGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig808:16469..19002-

>mRNA_H-paniculata_contig808.16087.1 ID=mRNA_H-paniculata_contig808.16087.1|Name=mRNA_H-paniculata_contig808.16087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=234bp|location=Sequence derived from alignment at H-paniculata_contig808:16469..19002- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGCTGCGTTGAAGACGCCCTTCCGACACAAGGCAGATCGGGTGCGTCT
ACCTTCTTCACCGCTTGTGAAAGAATCGAAGTTCGACGTGGAAGACAGCA
GCATCGACAGAGGGCTGCGTTGAAGACGCCCTTCCGACACAAGGCAGATC
GGGTGCGTCTACCTTCTTCACCGCTTGTGAAAGAATCGAAGTTCGACGTG
GAAGACAGCAGCATCGACAGGACCTAGGACCTAG
back to top