mRNA_H-paniculata_contig8072.16080.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8072.16080.1
Unique NamemRNA_H-paniculata_contig8072.16080.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8072.16080.1 vs. uniprot
Match: D8LM88_ECTSI (Acyl_transf_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM88_ECTSI)

HSP 1 Score: 383 bits (983), Expect = 4.840e-119
Identity = 198/302 (65.56%), Postives = 225/302 (74.50%), Query Frame = 3 
Query:    3 IRWPHFKLKDWQRYMMLSLSICLFALVTFSGLSGYQSYPCSIYDNPADQNCGSGWSRQQLTLYNAGTRPAWVLALVLLCFVCFNGQGGLIQQLLAHRAWVPPARLSFGAYLLHPLIINLWFLNSRAKFHFSKLDLFMNYVCVTGVTFGSALVMAFIIESPLTKLGRHLEALLKPRERIHKASVEYFAAEQSPGNIERHVLSQVGSSNGFLSEQGVETEDDIVLPVG-----VGGQSRAVLGAL--THQSNGNNTTHGAVSVAGVPAV-TGGELAALVAHTNPGYHNYMSH--GRRRGSEAFG 878
            +RWP FKL DWQRY+MLS S  +F +VTF G SGYQ+ PCSI+ +PA   CGSGW+  QL LYNAGTRPAW  AL+LLCFVCFNGQGGL+QQ LAHRAW P ARLSFGAYLLHPL+INLWFLNS  KFHFSKLDLFM+YVCV+GVTF SAL+MA I+ESPLTKLGR LE ++KPRER+HK S EYFAAEQSPGNIERHVL +  S + FL   G E ED  V  VG     + G  RA  G    +  SN N  +     + G  A  T GE+AALVA+TNPGYH+YMS    RRRGSEAFG
Sbjct:  625 MRWPQFKLADWQRYIMLSTSAVIFFVVTFVGYSGYQNAPCSIFQDPASSPCGSGWTASQLALYNAGTRPAWGFALILLCFVCFNGQGGLLQQWLAHRAWAPLARLSFGAYLLHPLVINLWFLNSTTKFHFSKLDLFMSYVCVSGVTFSSALIMALIVESPLTKLGRRLENIIKPRERVHKVSTEYFAAEQSPGNIERHVLQREDSDDDFLEADGREEEDFFVDDVGRTPSPMRGPMRAAGGGRGGSGGSNRNGVSSRLAGMQGGAAGGTRGEMAALVANTNPGYHDYMSEVTPRRRGSEAFG 926
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BLAST of mRNA_H-paniculata_contig8072.16080.1 vs. uniprot
Match: A0A836CJZ1_9STRA (Acyltransferase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ1_9STRA)

HSP 1 Score: 212 bits (539), Expect = 1.240e-55
Identity = 108/244 (44.26%), Postives = 144/244 (59.02%), Query Frame = 3 
Query:   12 PHFKLKDWQRYMMLSLSICLFALVTFSGLSGYQSYPCSIYDNPADQNCGSGWSRQQLTLYNAGTRPAWVLALVLLCFVCFNGQGGLIQQLLAHRAWVPPARLSFGAYLLHPLIINLWFLNSRAKFHFSKLDLFMNYVCVTGVTFGSALVMAFIIESPLTKLGRHLEALLKPRERI------------------------------------------HKASVEYFAAEQSPGNIERHVLSQVGS 617
            P   L+ WQR+  +  ++C+F  + F   SGY++YPC    NP +  CGS W   Q + YNA TRP W L LV+LC  CF  QGGLIQQ+L+HR WVP ARLSFGAYLLHP+IINLW LNS AKFHFS+LDL M+Y+CV   TF S+L+++ ++E+P+TKLGR+LE  ++ + +                                            +A V + AA+QSPG +ERH L + GS
Sbjct:  604 PRLHLRRWQRHACIWGAVCIFLSIIFCAASGYRAYPCPPTTNPDETYCGSRWPIWQRSAYNALTRPLWCLGLVMLCLPCFLNQGGLIQQMLSHRGWVPFARLSFGAYLLHPIIINLWLLNSTAKFHFSRLDLVMSYLCVATATFLSSLLLSLLVEAPMTKLGRYLEDAVRSKSKRGEAWGEXXXXXXXXXXXXXXXXXXXXXXXXAVVAAEADLTFDEQAEVGFEAAQQSPGFVERHHLKKGGS 847
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BLAST of mRNA_H-paniculata_contig8072.16080.1 vs. uniprot
Match: A0A7S0C326_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C326_9STRA)

HSP 1 Score: 130 bits (326), Expect = 5.660e-31
Identity = 63/156 (40.38%), Postives = 95/156 (60.90%), Query Frame = 3 
Query:   48 MLSLSICLFALVTFSGLSGYQSYPCSIYDNPADQNCGSGWSRQQLTLYNAGTRPAWVLALVLLCFVCFNGQGGLI--QQLLAHRAWVPPARLSFGAYLLHPLIINLWFLNSRAKFHFSKLDLFMNYVCVTGVTFGSALVMAFIIESPLTKLGRHLE 509
            + S+SI LF  + F G S YQ  PC  Y +    +CGSGW +  L LYN+  RPAW +AL+++  + FNGQ   +    +L    W P +RLSFG YLLHP++I +WFL+  +KF++S L+    Y     VTF  +L++  ++E P++K+ + LE
Sbjct:   60 LFSISILLF--LVFVGSSAYQHTPCIYYQDVHTDSCGSGWDKPSLALYNSLVRPAWSIALLIMTLLSFNGQFTALGASMVLNWNGWNPLSRLSFGMYLLHPMVIQVWFLSRTSKFYYSGLEFLFLYAGAVSVTFMCSLLLGLVVEWPMSKITKKLE 213
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BLAST of mRNA_H-paniculata_contig8072.16080.1 vs. uniprot
Match: A0A7S2X6E6_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X6E6_9EUKA)

HSP 1 Score: 117 bits (292), Expect = 8.360e-24
Identity = 62/156 (39.74%), Postives = 88/156 (56.41%), Query Frame = 3 
Query:   54 SLSICLFALVTFSGLSGYQSYPCSIYDNPADQ-NCGSG--WSRQQLTLYNAGTRPAWVLALVLLCFVCFNGQGGLIQQLLAHRAWVPPARLSFGAYLLHPLIINLWFLNSRAKFHFSKLDLFMNYVCVTGVTFGSALVMAFIIESPLTKLGRHLEA 512
            +L++ L  L  F G+   Q  PC+    P  +  CGSG  W   +   Y +  +P W + L LLC+V F GQ G++  LL H AWV PARLSFG YLLHPLIIN+WF      F +S +D  + +  V   T+ +++V+   +ESP   L +HL +
Sbjct:  532 TLALSLLLLCVFGGIDADQYKPCAYTMWPQGRVACGSGPEWDTTERAAYASLVKPTWSVGLALLCWVAFQGQAGIVGWLLNHDAWVVPARLSFGMYLLHPLIINVWFQKQTQFFRWSTVDFMLRFFGVLTGTYIASIVLYLALESPCGYLLKHLRS 687
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BLAST of mRNA_H-paniculata_contig8072.16080.1 vs. uniprot
Match: A0A7S2V7R6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7R6_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.370e-23
Identity = 51/100 (51.00%), Postives = 64/100 (64.00%), Query Frame = 3 
Query:  225 LVLLCFVCFNGQGGLIQQLLAHRAWVPPARLSFGAYLLHPLIINLWFLNSRAKFHFSKLDLFMNYVCVTGVTFGSALVMAFIIESPLTKLGRHLEALLKP 524
            + L+CFVCFNGQGG+IQ  L+HRAWVP +RL+FGAYL+HP IIN W  +   K  FS  + FM + C+  VTF  AL +   IE P   L    E  L+P
Sbjct:    8 MALMCFVCFNGQGGVIQSFLSHRAWVPFSRLTFGAYLIHPCIINGWMYHQTEKIRFSLTNTFMTFTCLVTVTFLVALALTLSIEGPCKSLLTSFEKGLQP 107
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BLAST of mRNA_H-paniculata_contig8072.16080.1 vs. uniprot
Match: B7G9E1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G9E1_PHATC)

HSP 1 Score: 111 bits (278), Expect = 4.510e-22
Identity = 58/160 (36.25%), Postives = 89/160 (55.62%), Query Frame = 3 
Query:   33 WQRYMMLSLSICLFALVTFSGLSG-YQSYPCSIYDNPADQNCGSGWSRQQLTLYNAGTRPAWVLALVLLCFVCF--NGQGGLIQQLLAHRAWVPPARLSFGAYLLHPLIINLWFLNSRAKFHFSKLDLFMNYVCVTGVTFGSALVMAFIIESPLTKLGRH 503
            W+ ++ +++++   ALVTF   +G Y   PC   + P   +CGS WSR    LY A  R  W+  + +L ++C   N +  L+  +L+ + W   ++LSFGAYL+HP++I +W L  R K  F  L   MNY+ V  V++  AL  A IIE P   L +H
Sbjct:  532 WRLHLAMAVALVCMALVTFGTAAGAYARRPCQYTEWPEVDHCGSSWSRNVTFLYTALGRTVWIAGVAVLLYICVGRNSERSLLASVLSWKCWTALSQLSFGAYLIHPIVIFVWQLADRQKEQFRLLTFGMNYLSVCVVSYVLALATALIIEFPCADLWQH 691
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BLAST of mRNA_H-paniculata_contig8072.16080.1 vs. uniprot
Match: A0A1Z5JCK8_FISSO (Acyl_transf_3 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JCK8_FISSO)

HSP 1 Score: 93.2 bits (230), Expect = 3.920e-16
Identity = 49/163 (30.06%), Postives = 85/163 (52.15%), Query Frame = 3 
Query:   36 QRYMMLSLSICLFALVTFSGLSG-YQSYPCSIYDNPADQNCGSGWSRQQLTLYNAGTRPAWVLALVLLCFVC-----FNGQGGLIQQLLAHRAWVPPARLSFGAYLLHPLIINLWFLNSRAKFHFSKLDLFMNYVCVTGVTFGSALVMAFIIESPLTKLGRHL 506
            +R ++L +++ +   V F   +G Y   PC   + P    CGS WS     LY A +R  W+  L ++ + C     F+ +  ++   L+ + W   + LSFGAYL+HP++I +W L  R K  FS L   +    +  V+F ++L++A ++E P  +L + L
Sbjct:  626 RRNILLLVALAVMTFVVFITAAGAYAQRPCQYNEWPRHGRCGSTWSPFVTFLYTAFSRTMWITGLCVVIYSCITDISFHDESNMVTSFLSWKVWTFLSNLSFGAYLIHPIVIFIWQLGGRQKAIFSLLSFSLTNFSIAVVSFVASLIVALLVELPAAQLWQRL 788
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BLAST of mRNA_H-paniculata_contig8072.16080.1 vs. uniprot
Match: A0A1Z5K471_FISSO (Acyl_transf_3 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K471_FISSO)

HSP 1 Score: 89.4 bits (220), Expect = 6.820e-15
Identity = 49/163 (30.06%), Postives = 81/163 (49.69%), Query Frame = 3 
Query:   36 QRYMMLSLSICLFALVTFSGLSG-YQSYPCSIYDNPADQNCGSGWSRQQLTLYNAGTRPAWVLALVLLCFVCF-----NGQGGLIQQLLAHRAWVPPARLSFGAYLLHPLIINLWFLNSRAKFHFSKLDLFMNYVCVTGVTFGSALVMAFIIESPLTKLGRHL 506
            +R + L ++  +   V F   +G Y   PC   + P D  CGS WS     LY A +R  W + L ++ + C      + +G +     + + W   + LSFGAYL+HP++I +W L  R K  FS L   +    +  V+F ++L++A ++E P   L + L
Sbjct:  684 RRNISLLMAFAVMTFVVFITAAGAYAQRPCQYNEWPRDGRCGSTWSPFVTFLYTAFSRTIWSIGLCVVIYSCITDTSLHDEGSMTTSFSSWKVWALLSHLSFGAYLIHPIVIFIWQLGGRQKAIFSLLSFSLTNFSIAVVSFVASLIVALLVELPAAHLWQRL 846
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BLAST of mRNA_H-paniculata_contig8072.16080.1 vs. uniprot
Match: A0A4Y2J7Y1_ARAVE (Nose resistant to fluoxetine protein 6 (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2J7Y1_ARAVE)

HSP 1 Score: 88.2 bits (217), Expect = 7.290e-15
Identity = 40/114 (35.09%), Postives = 72/114 (63.16%), Query Frame = 3 
Query:  165 WSRQQLTLYNAGTRPAWVLALVLLCFVCFNGQGGLIQQLLAHRAWVPPARLSFGAYLLHPLIINLWFLNSRAKFHFSKLDLFMNYVCVTGVTFGSALVMAFIIESPLTKLGRHL 506
            +SR + + YNA +R  +   +  + FVC  GQGG++  +L+ + W+P +RL++ AYLLHP+I N +F++ R    FS  ++ + Y+    +++  AL+ + + ESP+ +L RHL
Sbjct:  350 FSRVETSFYNALSRSGFACGVAWVIFVCVTGQGGVVNSVLSWKVWIPFSRLTYCAYLLHPIIHNAFFVSVRRLMEFSHTNVILLYLGFLIISYAVALLTSLLFESPVIRLERHL 463
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BLAST of mRNA_H-paniculata_contig8072.16080.1 vs. uniprot
Match: A0A3M6UEN2_POCDA (Uncharacterized protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UEN2_POCDA)

HSP 1 Score: 89.0 bits (219), Expect = 1.140e-14
Identity = 61/203 (30.05%), Postives = 103/203 (50.74%), Query Frame = 3 
Query:   42 YMMLSLSICLFALVTFSGLSGYQSYPCSIYDNPADQNCGSGWSRQQLTLYNAGTRPAWVLALVLLCFVCFNGQGGLIQQLLAHRAWVPPARLSFGAYLLHPLIINLWFLNSRAKFHFSKLDLFMNYVCVTGVTFGSALVMAFIIESPLTKLGR--HLEALLKPRERIHKASVEYFAAEQSPGNIE-RHVLSQVGSSNGFLSEQ 641
            Y++     C+   +  S L  Y  Y  +  DNP        +SR +  +Y   +R AW LAL  + F C N  GGL+ + L+ R W+P +RL++ AYL+HP+II+  F +    + +S + +   YV V G+T+  A +++  +E P+ +L +  HL  LL P     KA+V    +     +   R+++SQ    +  LS +
Sbjct:  605 YLINMAGWCVAIALALSTL--YGPYKVTRKDNPVP------FSRAENIIYGTFSRFAWSLALAWVIFACHNRLGGLVNKFLSARFWIPLSRLTYCAYLVHPIIIHTLFFSFETVWAYSDVHVAFCYVGVLGITYAGAFIVSVCVEYPMMQLEKDVHLH-LLDP---FGKATVTSLGSLAFHSHFHSRNLISQTSPKSAKLSSR 795
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8072.16080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM88_ECTSI4.840e-11965.56Acyl_transf_3 domain-containing protein n=2 Tax=Ec... [more]
A0A836CJZ1_9STRA1.240e-5544.26Acyltransferase family-domain-containing protein n... [more]
A0A7S0C326_9STRA5.660e-3140.38Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2X6E6_9EUKA8.360e-2439.74Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S2V7R6_9STRA1.370e-2351.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B7G9E1_PHATC4.510e-2236.25Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5JCK8_FISSO3.920e-1630.06Acyl_transf_3 domain-containing protein n=1 Tax=Fi... [more]
A0A1Z5K471_FISSO6.820e-1530.06Acyl_transf_3 domain-containing protein n=1 Tax=Fi... [more]
A0A4Y2J7Y1_ARAVE7.290e-1535.09Nose resistant to fluoxetine protein 6 (Fragment) ... [more]
A0A3M6UEN2_POCDA1.140e-1430.05Uncharacterized protein n=1 Tax=Pocillopora damico... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8072contigH-paniculata_contig8072:1365..8634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score353.2
Seed ortholog evalue1.1e-94
Seed eggNOG ortholog2880.D8LM88
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.transferase activity, transferring acyl groups
EggNOG OGsKOG3700@1,KOG3700@2759
Ec32 ortholog descriptionAcyltransferase 3
Ec32 orthologEc-05_001910.1
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1704
Cds size837
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8072.16080.1prot_H-paniculata_contig8072.16080.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8072 2188..8590 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931008.5946262-UTR-H-paniculata_contig8072:1364..21871622931008.5946262-UTR-H-paniculata_contig8072:1364..2187Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8072 1365..2187 -
1691481548.7805157-UTR-H-paniculata_contig8072:1364..21871691481548.7805157-UTR-H-paniculata_contig8072:1364..2187Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8072 1365..2187 -
1622931008.7151833-UTR-H-paniculata_contig8072:8590..86341622931008.7151833-UTR-H-paniculata_contig8072:8590..8634Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8072 8591..8634 -
1691481548.8521366-UTR-H-paniculata_contig8072:8590..86341691481548.8521366-UTR-H-paniculata_contig8072:8590..8634Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8072 8591..8634 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931008.6146274-CDS-H-paniculata_contig8072:2187..24121622931008.6146274-CDS-H-paniculata_contig8072:2187..2412Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8072 2188..2412 -
1691481548.7937694-CDS-H-paniculata_contig8072:2187..24121691481548.7937694-CDS-H-paniculata_contig8072:2187..2412Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8072 2188..2412 -
1622931008.6290448-CDS-H-paniculata_contig8072:3957..40811622931008.6290448-CDS-H-paniculata_contig8072:3957..4081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8072 3958..4081 -
1691481548.8024664-CDS-H-paniculata_contig8072:3957..40811691481548.8024664-CDS-H-paniculata_contig8072:3957..4081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8072 3958..4081 -
1622931008.6465197-CDS-H-paniculata_contig8072:5164..53131622931008.6465197-CDS-H-paniculata_contig8072:5164..5313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8072 5165..5313 -
1691481548.8115952-CDS-H-paniculata_contig8072:5164..53131691481548.8115952-CDS-H-paniculata_contig8072:5164..5313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8072 5165..5313 -
1622931008.6652749-CDS-H-paniculata_contig8072:5858..59811622931008.6652749-CDS-H-paniculata_contig8072:5858..5981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8072 5859..5981 -
1691481548.8213847-CDS-H-paniculata_contig8072:5858..59811691481548.8213847-CDS-H-paniculata_contig8072:5858..5981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8072 5859..5981 -
1622931008.6837692-CDS-H-paniculata_contig8072:7610..77611622931008.6837692-CDS-H-paniculata_contig8072:7610..7761Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8072 7611..7761 -
1691481548.831931-CDS-H-paniculata_contig8072:7610..77611691481548.831931-CDS-H-paniculata_contig8072:7610..7761Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8072 7611..7761 -
1622931008.6993763-CDS-H-paniculata_contig8072:8525..85901622931008.6993763-CDS-H-paniculata_contig8072:8525..8590Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8072 8526..8590 -
1691481548.842105-CDS-H-paniculata_contig8072:8525..85901691481548.842105-CDS-H-paniculata_contig8072:8525..8590Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8072 8526..8590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8072.16080.1

>prot_H-paniculata_contig8072.16080.1 ID=prot_H-paniculata_contig8072.16080.1|Name=mRNA_H-paniculata_contig8072.16080.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=279bp
MMLSLSICLFALVTFSGLSGYQSYPCSIYDNPADQNCGSGWSRQQLTLYN
AGTRPAWVLALVLLCFVCFNGQGGLIQQLLAHRAWVPPARLSFGAYLLHP
LIINLWFLNSRAKFHFSKLDLFMNYVCVTGVTFGSALVMAFIIESPLTKL
GRHLEALLKPRERIHKASVEYFAAEQSPGNIERHVLSQVGSSNGFLSEQG
VETEDDIVLPVGVGGQSRAVLGALTHQSNGNNTTHGAVSVAGVPAVTGGE
LAALVAHTNPGYHNYMSHGRRRGSEAFG*
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mRNA from alignment at H-paniculata_contig8072:1365..8634-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8072.16080.1 ID=mRNA_H-paniculata_contig8072.16080.1|Name=mRNA_H-paniculata_contig8072.16080.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7270bp|location=Sequence derived from alignment at H-paniculata_contig8072:1365..8634- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATTCGGTGGCCACATTTCAAGCTGAAGGACTGGCAGAGGTACATGATG
CTGTCGCTTTCCATTTGCCTTTTCGCGCTGGTTACCTTCTCCGGTCTATC
GGGATACCAGTGAGTGACAGTACAGTTACTCTGATAATAGGTGCTTTCAC
GGTGAGTAGTGGTGCTTCAACAGTGGAAGCATATCTCCTGCAAGTATTGA
ATAATGCCGTGTGAAACGGTACAAAATCGATTACAAGTATGTAACAGAAA
TAATGGAGTCGCAATGAATACCGGTGGTGTACAAAAGAGGAATACCATAG
TCTCAGTGAGTTGCAGCACATCAGTGTAAGATGATGCTGTAGCAGGGAGT
AACAGCTCTTCTGTAACAAAGAGCAACACTTTGGCACTAGACGTGTCCAT
TACTTCACCCCCCCGGGCAATACGAATGGAGCATTCGCAACTATCTCGAA
CTAACATTATTTGTCTTGGGTAAACACGTATTTATTCGTTTACAAGTCTA
TGAATGGTCACTTTACAGGTAGTTACCAGGTGGCCGTATACCCGGCGAAT
AGTCACACATGCAGGTCCTGTTTATTTTCCGGATGGTATGGTACAGATTG
AATACTCTGATGCCCGAGCTTTTCGATGTTCCATGTTATATCGAGAACAC
TGCATTTTATTCTCGGTACATAGACTCTTCCCCAACCTACACAGATGCAG
TATTCGTTCCAAATTTCTCGTATTTATTCGTGTCTTGTATTCGTATTTGT
CCCGGGGGTGAACTAGTTAAGGGGTAGATTATTCACCAGCATGTTAGAGT
TCTCTCTCCCTCTCCCTCTCCGTCTTTTTGCGCCGACCTCAAAAATATCG
TGTCTATTGTTGCTTTTTGGCAGGAGTTACCCGTGCTCCATCTACGACAA
CCCGGCCGACCAAAACTGCGGATCTGGGTGGAGTAGACAGCAACTGACGC
TATACAACGCAGGGACTCGTCCTGCGTGGGTTCTGGCCCTCGTACTCTTG
TGCTTCGTCTGTTTCAATGGCCAGGTACAATATTCCCTCTGTCGTGTGAA
TCCACGAGATCACGCCTGAAGTCTTACTATGACGAAGCCTAGGGCAGGGC
ATATTTTTATTGTTGTGCCCCTCGAATGTGTGTATTTTCCCACCGACTCG
AAATCGAATCCCGTGATGCGCCGAGACCTAGGCCACCACTCTAGTCGTGA
AAGCACTAAATATGTGCTGCAAGTGAGGAATGGATGCCTCTATTGAAGGG
AGGTCTAGAACAATTGTCGAAGCTCTCACGACCAAGTACCAAAAGCGTGG
AGTACTGGGCTCGTTTTGTTTTTCCTTTTGTCACGAGGTCGGATATATTT
TTTCGTGCATCGAAAGTCATCAATGGCTGCACTGACCGTCGGTCGCTGTA
CAACTACCGTTACAAAGCTACATGACGTCAACGGATTCATACCACCCCCC
CGTCGCATCCTGAAGTAATATGGCTTGATGGAGTGCTAGTATGGTCTGTG
ATTTGGAACACACAACAAACGGTCTTTAGCTGGTGAACACGGTCTTAGAA
TCGTGCCATCTCCACAACGATCTTTGACCAGCTTTCTTTCATCACATTTT
TTGTATTTTCTGAAGATTTGACACCTTTGGCGCGTCTTCTGGCCACTCAC
GTTGGCTGCAACAATTCCAAGACTTTCGTATACTATGGTTGGCTGAAATC
GACTTCTTGCTTGGATGTGGGGCTGTCTTTTTTCACATCTTTTATTTATT
GTTGATGAAATCTAGAGTACACGCGCTCTTTGGGATGCAAGCGTCCCCAC
CAAAGAGCCACGGAGTATCGATGCGGAGTCGATTACACGAGTTCGCAAGT
GAGTACGCAAGCTAGTCGTGGAGATTAGATGTACGAAATTCCGCACAAAC
GTTATCATGTCAAAATATCGCACGGCCACATTTGCGAATTACGAACAACC
CTTGAAAAGTAAGACGCAACGAAAAAACAAGACCACTGGGACCTCTACTG
TAGTGTTAGTTTGATCTGATCTGTAGTTGAGGTTTTTGTTTTTTTCATCA
TCACGCCTATCATTGGTGTTCTTTGAATCGCTGACCCACCAGCGGGCCCA
AAACAAAACTCCAAGCGGTCAACTATGAACTGGGGCCCAACTGGCACATA
TTCGTAGTCAGGCAACGCGTACGCCACGAGTATATTTTAGTAAAGTATAT
GAAAATTTCCTTGGCAAAGAATATGGCAACTTAGGTACTACTGCTATCTG
AGATAGGGAAGAGGATTCCTCCTGTTGTTCTCCTGCAGATTGATCCCAAT
TGTGTCCAGGTGAATTCACGATGCCTGTTGGATTGCAATGATTATTTTTT
ATCTTCTTGTTTAGCCCCCGGAAGGCTGAGGCAAAAACCTTTACCGATGC
TTCCATACTCAGGTGTTTACCCAAGCATGTCTACATTTCCTTTAACAGAA
GAGAGTTATTCATTCCTCTGTGGGGTAGGCACCACCCCGGTTCGGCCGAA
CCAAGTAGGCAGCGTGGGAGTTTCACCCACTAAAAGGCCTCTTACTAGAC
TTACAGTCATGCTCAGTTCACGAGCTACCCTACCCGTTGGGATTGCAATG
ATTATTCAACGCCTGTGTACCCAACGCTCCACCTTCCCAATGCAATATTC
CAGGGTGGATTGATACAGCAGCTGCTAGCGCACAGAGCGTGGGTGCCGCC
AGCGCGTCTGAGCTTCGGGGCTTATCTCCTGCATCCCCTGATCATAAACC
TTTGGTTTCTGAATTCAAGAGCAAAGGTGTGTCTGTGTTTCCTTGTGGGC
GACCTGTCGTTACGTACCACATGTTTTGCCATGTGGTTACCATTGATTGA
TCGTTGCGAATACAGAATGTCAATTTGGTCGTCTCGAGGTTCAGCTCCAG
TGGAGTTACAAGAAACACGACAGTACCGTAGAAGGTCCAGCAAGCACTTC
GTCATGAATCGAGCGGGTCGTACACAAATTTCAACTGAAGGGGGGTGCAG
CACGATGCCAAGCTCTATTTTTCGGGCGAGAAAGCTCAATAGTTCAAGTG
CGGACCAAACGTTGGCATCAATATTACACCATGCCCAAGCAACGAGTATG
TAAAGTTGAATCCCCTACTGTCCAAATACAACTGAAATACAGTTGTTCCG
AGACGATCCCACACTACAATCAAGATAACTTGTCATCGAAAATAGACATT
TGCCCTTCGTTCAGTTGAAACGGCTCACCGTTGTCCCTGCCCCTGCCTGC
CCACCATCCACCCACTCCCACATCTCACCCCCGAAACATGCGTTTATCCC
TCGGCCTGCTCGCCGTCCCAGTTTCACTTCTCCAAGCTGGATTTGTTCAT
GAACTACGTATGCGTAACAGGAGTCACCTTCGGCAGTGCTCTGGTAATGG
CGTTTATCATCGAAAGCCCTCTCACCAAGCTGGGGCGGCACCTGGAGGCA
CTGCTGAAACCTCGAGAACGGTTCGTAAAAATGATACTTTTTTTTCTTCA
GAAAGTATGTTGTATATCATTTTTTTTTTGTTATACACGAGTTCTTTGGC
CATTTAGCAATTTTCTTCGCGTATTGCGCTGGTCACGGCTGACGGCAGAG
CTGCTCCTTGGTCTGCATACTGGGCACCGTTATGTACGAACAGTGATGCA
CACAACCCGTGTACAGACGTTTTTCCCTATTGCCGCGATGCACGGCAACT
TTCTCTCTCCTTTGGTGTGGTGCTCGAATTGCTGACGTCCATCCTTCTGT
CGTGATTGTTTGCCTTAATCAGCACTGGGGCACAGCAAGACACAACGGAC
AATATGGAACCGTTAACAACAGGACCTATCGCATATGAAATGTCATCTAT
CGATGAGTACTGCATACTGTAGGCGGAAATGGTAATAATTGAAATGTGGG
AAGGACCATGCTGAACCATCGAGCCTAAATATCCATCATCTGTTTGTTGT
TGAGAGTTCGTTAACCGCAATGGTTGCATATGGAAATTATTTCCAAATGA
AATACTTGCGGTCTTCAATTTCTGAAACAACAATCGGAGAATGAAAAACC
AGGGTCGCTTTTTTAGCATGGCCATAATTAATCCTTAAAAACAGAGGTAT
GCAGCTACGCGGCTATGCCCGTGCAGTCGATGTCTCTCTCTCGTTCCCAT
ACACTGTGATGGCCTTTGATATCGCACAGAGGTGCTACGGTTTTTCAAAC
GCTTTTCATCTCGACAAATACGTACCAAATTGCTCACAAAAATGTGTCAT
TGGAGAGATTTTGCGAACATCTGTCGATTGACGGGCTCTCTCGACCAAGT
AAGGTTACTCCATGTTCTCGAGATAATCGCGTTTGAAAGGCGATCGCTGC
ACTATCAAATGATAGTACGGTATGCAAAACCTGTGCCCCATGCTTGGCGG
CTTTTGCTGTCCCCTCACGTGTCGAGCTGCGCTTTTCTAATAGTACTTCA
GTATAGAATTGAAAACTGTTCCGGAATGACAATGGCCACCCTCTTCGCGT
GTTCTATAATGAGGATGTGCTTGATTTACTCGATTTCAAAATTCCGTCGT
CAGGATACACAAGGCAAGCGTTGAGTACTTCGCCGCTGAGCAGTCTCCGG
GAAACATTGAACGACACGTTCTCTCGCAAGTGGGATCATCGAACGGCTTT
TTGTCAGAGCAAGGTGTTGAGACGGAGGTATGCGGGGTGACTTTGGTAAC
GTTTCATGTGTTGATCCTTGTATTTGGGCTCTTTATTTTCCTGTTTAGTT
CCTAGTTGTATTCATTTTTTATTTATATTTTTTTATGCAAATTTCTTATT
GTTATTATTTAACGAACACACACACACACACACATATATATATATATATA
TATATACATATATATGTTTCTTTTATTTGTTCTAGTTCGCTTGTCATTTA
AAATTTTAGTTGTCGAGGGTTGCTCTTTCGCTTTTGTATGTGTTTGTGGG
TGTTCGTGTGATTTGTTTGTGTGTAATATCTTGGCTTCCTTGCTGTCTTT
AGTATGAAATTACATTTATGTCCTGTGGCATTTCCGCTAAAATCTGTGTT
TTCTTGTGTATTTTGAAAAGAAAGGATGACCCGCGCGTGTTTATTTTCAG
CTGTTGACGGTATGATTGTCTTCTCTCTCGTGTATTGGTACTCCCCACCT
ACTTTGGCCACCGTTACCAACTCATTTTTTATCGTTCGTTCGTTTGATTT
GTGTGTGCGTAGCTGAAGGATGCCATTTTGCTTGCCGAATTTCGTCATCA
CCCACCACTTTATTTCGTACCAACCGCGGGGGCCAATCAAACAGCTTGAA
GATTGAGTTGCATTTCTTGTGAAATAGTTCGCCTCAAAAACCGAGCGAAA
ACTTCACCATCATCAATAATACACCCCTGGACTTGCTATTCTGTGCAACG
TATCGCGTCTACAAGCTGCAAAAAAAGACAAATTAAAACTTACGCCATGT
ATATCTGTATTTTTTGCAACATTTGTGTGTGGAGAATGACCTGTAAAAGA
GGCACCCCCCGGACAAATACGAATACTTGGCATATTCGCCACGAAATTAA
GAAGTATATTCGTCTGAGTTTTTCAGAATGAGCTTGTGTATTCTATGTGC
CCTGGACCATCCATCACTGCTAATAATCCTCGTATGTCGAATTATAATGG
GTGGATGGATACTTTATTCCATTTGTCAGCTCATTCTGAAACTCATGCAA
ATACTTTTTGTTTCGTGGCGAATACTACCCGAATTTTTCGTATTTTTCGC
ACGAGTGTCTGTGGAGGCCAGAACCTCTTTTCACAATGAAGTAGGCCGGC
GGTAAGGCCTGCTAGGACAATTTAGTTCCCGACCACGATATCACAAGGTC
GCACATTTGAGTCGGATCTCGATCACGACAAAATCAATGCTCAGTAAGTA
AGGTGCAAGATGATGGACGACCCCGAGCAACACCTCCGTTAAAGCTTGAG
GAAAGACAATGCCGAGGTAGTGCGTGTTAAGAAGCTGGAAATTTTGAAAA
AGAAAAAAAACAGAAAAAACGGGAAGGACATTCACCGCCGCCAGCTGGTC
GAAACCGGTTAGTTTTACCCACTTTTAAGCAGGAGCCTCTTGCAAGAAGC
GAAACGACTCATTAAGGGATGGTGTAGAGAACATGCTGGATAGACGATGG
GATAACGACGTTCCATAACTACATGTGAAGGGACCCCTTATTTTCGCATT
TTGTTCGAACGCTCCATTTCAGGATGATATCGTGTTACCTGTGGGAGTAG
GCGGGCAGTCTAGGGCAGTGTTGGGGGCGCTAACCCACCAAAGCAACGGG
AATAACACGACTCACGGAGCGGTGAGCGTCGCGGGAGTTCCCGCGGTAAC
AGGGGGAGAGTTGGCGGCGCTAGTGGCACATACAAATCCGGGATATCACA
ACTACATGAGTCATGGTCGAAGGCGCGGCAGCGAAGCGTTCGGTTGATGA
GGATTTTTTTAGAGTCCATAGAGTTGAGCCATCGTTGGTCTGGGCGGCCA
TCGTTTTAAGTTTTTGTTTCCTTGATTATTTTAATATTTGTTTTCTGGGG
ATGGGAAGAGAGAAAGGGGTTCTATACGTTGATTTTCCCCTATTCATTGA
CTTTTCTCGTAATCTCCTTTGCCCCCTCCCCTCTTTTGTTTTTTTACGGT
GGTGGTGGTAATGGTTGGGGTGGAGGTGGGTCTGAAATTTCGTGCGCTTT
TTTCTATTTACAAGCAGCTGGACGTGTGATATGTACGCATTTGCAATTGC
CTGCCCAACCGACTGATGAGCTAGCTGTCTAGGGGGTCGTTTTCTATACT
CCCCCACGAAAAAACATTCGTACAGATTTCCAAGGTTTGAGAGTTTTGCT
AAATATAGGGTAATGTTTCACCCCCTGGGCAAGTACGGGTGGAGCATTCG
TAACTATCTCAAACTACCATTATTTGTCTTGGGTAGATACGTATTTAGTC
GTTTACAAGTCTATGGATGGTCACTCTACAGATGGTCACCAGGTGGTCGT
ATATCTGGCGAACAGTCACACATGCAGCTCCTGTTTGTTTTTCGGATGGT
GCTGTACCGATTAAATACTCTATCTGCCCGAGCTTTTCGATGCTCCATGA
TATATCGAGGGCAACGCACATTACTCGCGTCACGTGGACATCTGCCCCAA
CTCAAACAGATAGAGTGTTCGCTCCAGAGTTCTCGTATTTTTTCGTATCT
TATATTCGTATTTGTCCGGGGCGTATAATGTTTCCTGCTGCCTTTGGAAC
CGAAAATTAAGCATCAGTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig8072:1365..8634-

>mRNA_H-paniculata_contig8072.16080.1 ID=mRNA_H-paniculata_contig8072.16080.1|Name=mRNA_H-paniculata_contig8072.16080.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1674bp|location=Sequence derived from alignment at H-paniculata_contig8072:1365..8634- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCTGTCGCTTTCCATTTGCCTTTTCGCGCTGGTTACCTTCTCCGG
TCTATCGGGATACCAATGATGCTGTCGCTTTCCATTTGCCTTTTCGCGCT
GGTTACCTTCTCCGGTCTATCGGGATACCAGAGTTACCCGTGCTCCATCT
ACGACAACCCGGCCGACCAAAACTGCGGATCTGGGTGGAGTAGACAGCAA
CTGACGCTATACAACGCAGGGACTCGTCCTGCGTGGGTTCTGGCCCTCGT
ACTCTTGTGCTTCGTCTGTTTCAATGGCCAGGAGTTACCCGTGCTCCATC
TACGACAACCCGGCCGACCAAAACTGCGGATCTGGGTGGAGTAGACAGCA
ACTGACGCTATACAACGCAGGGACTCGTCCTGCGTGGGTTCTGGCCCTCG
TACTCTTGTGCTTCGTCTGTTTCAATGGCCAGGGTGGATTGATACAGCAG
CTGCTAGCGCACAGAGCGTGGGTGCCGCCAGCGCGTCTGAGCTTCGGGGC
TTATCTCCTGCATCCCCTGATCATAAACCTTTGGTTTCTGAATTCAAGAG
CAAAGGGTGGATTGATACAGCAGCTGCTAGCGCACAGAGCGTGGGTGCCG
CCAGCGCGTCTGAGCTTCGGGGCTTATCTCCTGCATCCCCTGATCATAAA
CCTTTGGTTTCTGAATTCAAGAGCAAAGTTTCACTTCTCCAAGCTGGATT
TGTTCATGAACTACGTATGCGTAACAGGAGTCACCTTCGGCAGTGCTCTG
GTAATGGCGTTTATCATCGAAAGCCCTCTCACCAAGCTGGGGCGGCACCT
GGAGGCACTGCTGAAACCTCGAGAACGTTTCACTTCTCCAAGCTGGATTT
GTTCATGAACTACGTATGCGTAACAGGAGTCACCTTCGGCAGTGCTCTGG
TAATGGCGTTTATCATCGAAAGCCCTCTCACCAAGCTGGGGCGGCACCTG
GAGGCACTGCTGAAACCTCGAGAACGGATACACAAGGCAAGCGTTGAGTA
CTTCGCCGCTGAGCAGTCTCCGGGAAACATTGAACGACACGTTCTCTCGC
AAGTGGGATCATCGAACGGCTTTTTGTCAGAGCAAGGTGTTGAGACGGAG
GATACACAAGGCAAGCGTTGAGTACTTCGCCGCTGAGCAGTCTCCGGGAA
ACATTGAACGACACGTTCTCTCGCAAGTGGGATCATCGAACGGCTTTTTG
TCAGAGCAAGGTGTTGAGACGGAGGATGATATCGTGTTACCTGTGGGAGT
AGGCGGGCAGTCTAGGGCAGTGTTGGGGGCGCTAACCCACCAAAGCAACG
GGAATAACACGACTCACGGAGCGGTGAGCGTCGCGGGAGTTCCCGCGGTA
ACAGGGGGAGAGTTGGCGGCGCTAGTGGCACATACAAATCCGGGATATCA
CAACTACATGAGTCATGGTCGAAGGCGCGGCAGCGAAGCGTTCGGTTGAG
ATGATATCGTGTTACCTGTGGGAGTAGGCGGGCAGTCTAGGGCAGTGTTG
GGGGCGCTAACCCACCAAAGCAACGGGAATAACACGACTCACGGAGCGGT
GAGCGTCGCGGGAGTTCCCGCGGTAACAGGGGGAGAGTTGGCGGCGCTAG
TGGCACATACAAATCCGGGATATCACAACTACATGAGTCATGGTCGAAGG
CGCGGCAGCGAAGCGTTCGGTTGA
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